prot_F-serratus_M_contig102.277.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig102.277.1
Unique Nameprot_F-serratus_M_contig102.277.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length216
Homology
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BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: H3GZT7_PHYRM (U1 small nuclear ribonucleoprotein C n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZT7_PHYRM)

HSP 1 Score: 86.3 bits (212), Expect = 1.080e-17
Identity = 43/76 (56.58%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQATNGASMSGS----GTTPPAARPVNPS 72
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL       A  G  M+      G T P + P  PS
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL-------AGQGVVMTPGEWLRGPTVPGSLPPRPS 69
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BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A329S385_9STRA (Matrin-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S385_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.110e-17
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL 42
[Close]
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A7S2BRH0_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BRH0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.180e-17
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDF 45
            MPRYYCDYC TYLTHDSAPGR+QH RGWKH +NVK +Y+QF+ +F
Sbjct:   21 MPRYYCDYCDTYLTHDSAPGRKQHMRGWKHRENVKQYYEQFMSEF 65
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BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A8K1FL98_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FL98_PYTOL)

HSP 1 Score: 85.1 bits (209), Expect = 1.380e-17
Identity = 42/75 (56.00%), Postives = 47/75 (62.67%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDD----FLKQQATNGASMSGSGTTPPAARPVNP 71
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL          Q   G  M+G    PP   P  P
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFLTGQGVMMAPGQWLRGPPMAGG--MPPRPGPGGP 73
[Close]
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: K3WTM9_GLOUD (U1 small nuclear ribonucleoprotein C n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTM9_GLOUD)

HSP 1 Score: 84.7 bits (208), Expect = 2.090e-17
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL 42
[Close]
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A0P1AIX6_PLAHL (U1 small nuclear ribonucleoprotein C n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIX6_PLAHL)

HSP 1 Score: 84.7 bits (208), Expect = 2.200e-17
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL 42
[Close]
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: RU1C_PHYIT (U1 small nuclear ribonucleoprotein C n=11 Tax=Phytophthora TaxID=4783 RepID=RU1C_PHYIT)

HSP 1 Score: 84.7 bits (208), Expect = 2.260e-17
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL 42
[Close]
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: M4C139_HYAAE (Matrin-type domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C139_HYAAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.700e-17
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL 42
[Close]
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A662XYV9_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYV9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.700e-17
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL 42
[Close]
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A484E4H6_BRELC (U1 small nuclear ribonucleoprotein C n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4H6_BRELC)

HSP 1 Score: 84.7 bits (208), Expect = 3.720e-17
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL 42
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GZT7_PHYRM1.080e-1756.58U1 small nuclear ribonucleoprotein C n=1 Tax=Phyto... [more]
A0A329S385_9STRA1.110e-1780.95Matrin-type domain-containing protein n=1 Tax=Phyt... [more]
A0A7S2BRH0_9STRA1.180e-1775.56U1 small nuclear ribonucleoprotein C n=1 Tax=Dicty... [more]
A0A8K1FL98_PYTOL1.380e-1756.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WTM9_GLOUD2.090e-1780.95U1 small nuclear ribonucleoprotein C n=1 Tax=Globi... [more]
A0A0P1AIX6_PLAHL2.200e-1780.95U1 small nuclear ribonucleoprotein C n=1 Tax=Plasm... [more]
RU1C_PHYIT2.260e-1780.95U1 small nuclear ribonucleoprotein C n=11 Tax=Phyt... [more]
M4C139_HYAAE2.700e-1780.95Matrin-type domain-containing protein n=1 Tax=Hyal... [more]
A0A662XYV9_9STRA2.700e-1780.95U1 small nuclear ribonucleoprotein C n=1 Tax=Notho... [more]
A0A484E4H6_BRELC3.720e-1780.95U1 small nuclear ribonucleoprotein C n=1 Tax=Bremi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 4.6E-7
score: 39.5
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 1..36
e-value: 1.1E-16
score: 60.2
NoneNo IPR availableGENE3D3.30.160.60coord: 1..56
e-value: 4.3E-21
score: 76.8
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..214
e-value: 1.1E-21
score: 76.7
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148FAMILY NOT NAMEDcoord: 1..206
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 1..167
score: 9.694
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 11.187
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:832808..851856 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.277.1mRNA_F-serratus_M_contig102.277.1Fucus serratus malemRNAF-serratus_M_contig102 832593..851877 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig102.277.1 ID=prot_F-serratus_M_contig102.277.1|Name=mRNA_F-serratus_M_contig102.277.1|organism=Fucus serratus male|type=polypeptide|length=216bp
MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQA
TNGASMSGSGTTPPAARPVNPSPRSMGPAPSGPVVMGSGSLGMGAMSNSL
MPGGGMGGRGPMNGMGPMGGGPMVGGHMAHGPMGGPRGYGMGHPPPPAGF
GMGGPHGGMGPPPNGRMGPRGPPGGYGMAPPLNGGMPGPRIPSAPPQAPP
QAPANANGTTPGDRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
IPR017340U1_snRNP-C
IPR000690Matrin/U1-C_Znf_C2H2
IPR036236Znf_C2H2_sf