prot_F-serratus_M_contig102.277.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig102.277.1
Unique Nameprot_F-serratus_M_contig102.277.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length216
Homology
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: D7FQT4_ECTSI (U1 small nuclear ribonucleoprotein C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT4_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 8.820e-29
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQATNGAS 55
            MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL+ F++QQA NG +
Sbjct:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLEKFVQQQAANGGA 55          
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A225VX70_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VX70_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.260e-20
Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = 0
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQATNGASMSGS----GTTPPAARPVNPS 72
            MPRYYCDYC TYLTHDS PGR+QHNRGWKH +NVKL+Y+QFL       A  G  M+      G TP  + P+ P+
Sbjct:    1 MPRYYCDYCDTYLTHDSVPGRKQHNRGWKHRENVKLYYEQFL-------AGQGVIMTPGEWLRGPTPAGSLPLRPN 69          
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A5D6XZ56_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ56_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.360e-19
Identity = 44/77 (57.14%), Postives = 51/77 (66.23%), Query Frame = 0
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQATNGASMSGS----GTTPPAARPVNPSP 73
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QF+       A +G  M+      GT PP A P  P P
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFV-------AGHGGLMTPGEWLKGTPPPGALPPRPMP 70          
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: G4YJ70_PHYSP (Matrin-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YJ70_PHYSP)

HSP 1 Score: 88.2 bits (217), Expect = 1.510e-19
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS PGR+QHNRGWKH +NVKL+Y+QFL
Sbjct:    1 MPRYYCDYCDTYLTHDSVPGRKQHNRGWKHRENVKLYYEQFL 42          
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A6U1MC29_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MC29_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.880e-19
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 0
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFL-KQQATNGASMSGSGTTPPAARPVNP 71
            MPRYYCDYC TYLTHDSA GR+QHNRGWKH +NVK++Y+QF+ +F  K+Q T      G G   P   PV P
Sbjct:    1 MPRYYCDYCDTYLTHDSAQGRKQHNRGWKHRENVKVYYEQFMQEFYAKRQKT---VPMGPGMPRPGGPPVPP 69          
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A2D4BJ14_PYTIN (Matrin-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJ14_PYTIN)

HSP 1 Score: 85.5 bits (210), Expect = 4.510e-18
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 0
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQATNGASMSGS----GTTPPAARPVNPSP 73
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL          G +M+      G   P A P  P P
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFLTG-------QGVAMTPGQWLRGPPAPGALPPRPMP 70          
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A4D9CP67_9STRA (Matrin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CP67_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.520e-18
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 0
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQATNGASMSGS 59
            MPRY+CDYC TYLTHDSAPGR+QHNRGWKH +NVK++Y+Q++  +   +A+ G  + GS
Sbjct:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRGWKHRENVKMYYEQYMAAW---EASRGMPVGGS 56          
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A024UX52_9STRA (U1 small nuclear ribonucleoprotein C n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UX52_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.820e-18
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 0
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQATNGASMS-GSGTTPPAARPVNPSP 73
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+  +          GA+M+ G+   P A+RP  P P
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEAVIQG-------QGATMTPGAWLRPDASRPPAPRP 67          
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A421GAB6_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GAB6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 9.250e-18
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = 0
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQATNGASMSGS----GTTPPAARPVNPS 72
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL       A  G  M+      G   P A P  PS
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL-------AGQGGIMTPGEWLRGPAAPGALPPRPS 69          
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Match: A0A080ZAD2_PHYPR (Matrin-type domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080ZAD2_PHYPR)

HSP 1 Score: 84.7 bits (208), Expect = 9.950e-18
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0
Query:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFL 42
            MPRYYCDYC TYLTHDS  GR+QHNRGWKH +NVKL+Y+QFL
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQFL 42          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.277.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT4_ECTSI8.820e-2987.27U1 small nuclear ribonucleoprotein C n=1 Tax=Ectoc... [more]
A0A225VX70_9STRA9.260e-2056.58U1 small nuclear ribonucleoprotein C n=1 Tax=Phyto... [more]
A0A5D6XZ56_9STRA1.360e-1957.14U1 small nuclear ribonucleoprotein C n=1 Tax=Pythi... [more]
G4YJ70_PHYSP1.510e-1983.33Matrin-type domain-containing protein n=2 Tax=Phyt... [more]
A0A6U1MC29_9STRA2.880e-1959.72U1 small nuclear ribonucleoprotein C n=1 Tax=Fibro... [more]
A0A2D4BJ14_PYTIN4.510e-1854.55Matrin-type domain-containing protein n=1 Tax=Pyth... [more]
A0A4D9CP67_9STRA4.520e-1861.02Matrin-type domain-containing protein n=1 Tax=Nann... [more]
A0A024UX52_9STRA8.820e-1855.41U1 small nuclear ribonucleoprotein C n=4 Tax=Aphan... [more]
A0A421GAB6_9STRA9.250e-1856.58U1 small nuclear ribonucleoprotein C n=1 Tax=Phyto... [more]
A0A080ZAD2_PHYPR9.950e-1880.95Matrin-type domain-containing protein n=1 Tax=Phyt... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 4.6E-7
score: 39.5
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 1..36
e-value: 1.1E-16
score: 60.2
NoneNo IPR availableGENE3D3.30.160.60coord: 1..56
e-value: 4.3E-21
score: 76.8
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..214
e-value: 1.1E-21
score: 76.7
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148FAMILY NOT NAMEDcoord: 1..206
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 1..167
score: 9.694
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 11.187
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:832808..851856 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.277.1mRNA_F-serratus_M_contig102.277.1Fucus serratus malemRNAF-serratus_M_contig102 832593..851877 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig102.277.1 ID=prot_F-serratus_M_contig102.277.1|Name=mRNA_F-serratus_M_contig102.277.1|organism=Fucus serratus male|type=polypeptide|length=216bp
MPRYYCDYCGTYLTHDSAPGRRQHNRGWKHTDNVKLHYKQFLDDFLKQQA
TNGASMSGSGTTPPAARPVNPSPRSMGPAPSGPVVMGSGSLGMGAMSNSL
MPGGGMGGRGPMNGMGPMGGGPMVGGHMAHGPMGGPRGYGMGHPPPPAGF
GMGGPHGGMGPPPNGRMGPRGPPGGYGMAPPLNGGMPGPRIPSAPPQAPP
QAPANANGTTPGDRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
IPR017340U1_snRNP-C
IPR000690Matrin/U1-C_Znf_C2H2
IPR036236Znf_C2H2_sf