prot_F-serratus_M_contig102.275.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig102.275.1
Unique Nameprot_F-serratus_M_contig102.275.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length155
Homology
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BLAST of mRNA_F-serratus_M_contig102.275.1 vs. uniprot
Match: D7FQT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT2_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.170e-15
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0 
Query:   78 QVWQQASIRRLETLEAGRDWRGVLAAMDSARNEGVKLSKVVYNKAVSALAKSGR 131
            QV QQA IRRL TLEA RDWRGVLAAMDSARNE + +S+ VYNKA+ A+AKSGR
Sbjct:   52 QVQQQALIRRLRTLEARRDWRGVLAAMDSARNEQMPMSRTVYNKAIIAIAKSGR 105
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BLAST of mRNA_F-serratus_M_contig102.275.1 vs. uniprot
Match: A0A6H5JTI3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 7.700e-15
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0 
Query:   78 QVWQQASIRRLETLEAGRDWRGVLAAMDSARNEGVKLSKVVYNKAVSALAKSGR 131
            QV QQA IRRL TLEA RDWRGVLAAMDSARNE + +S+ VYNKA+ A+AKSGR
Sbjct:  128 QVQQQALIRRLRTLEARRDWRGVLAAMDSARNEQMPMSRTVYNKAIIAIAKSGR 181
[Close]
BLAST of mRNA_F-serratus_M_contig102.275.1 vs. uniprot
Match: D8LTS0_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS0_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 6.000e-7
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 0 
Query:   95 RDWRGVLAAMDSARNEGVKLSKVVYNKAVSALAKSGRWREALTLRDTMQKNGLTPDVYTYS 155
            RDWRG L A+ SA  EG   ++  +  AV A+A SGRW+EAL L   M + G+ PD++TYS
Sbjct:  144 RDWRGALHALRSA--EGAACARC-HTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYS 201
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQT2_ECTSI1.170e-1575.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTI3_9PHAE7.700e-1575.93PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D8LTS0_ECTSI6.000e-749.18PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 117..155
e-value: 6.9E-10
score: 39.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 117..151
e-value: 1.3E-7
score: 29.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 115..149
score: 11.466
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 56..155
e-value: 1.0E-13
score: 53.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:815736..825287 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.275.1mRNA_F-serratus_M_contig102.275.1Fucus serratus malemRNAF-serratus_M_contig102 815734..825287 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig102.275.1 ID=prot_F-serratus_M_contig102.275.1|Name=mRNA_F-serratus_M_contig102.275.1|organism=Fucus serratus male|type=polypeptide|length=155bp
AVEEHGEDSTRNRARAANGTVWNADLSHAGHRENESVSSEHVRQRTQTPS
MINEPRISARCKENKDQRKGGSQHGARQVWQQASIRRLETLEAGRDWRGV
LAAMDSARNEGVKLSKVVYNKAVSALAKSGRWREALTLRDTMQKNGLTPD
VYTYS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf