prot_F-serratus_M_contig102.258.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig102.258.1
Unique Nameprot_F-serratus_M_contig102.258.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length448
Homology
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A199UZY9_ANACO (Heterogeneous nuclear ribonucleoprotein 1 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UZY9_ANACO)

HSP 1 Score: 186 bits (472), Expect = 2.820e-50
Identity = 96/200 (48.00%), Postives = 132/200 (66.00%), Query Frame = 0
Query:   13 GKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRD------RAPQPRATTDRQFSSRGGS----QIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGGYSGS 202
            GK+F+GG++W+TT+E LK +FGK+G +S  ++MR+K++G PRGFGFV F   S  D  L+++HVIDGRT++ KRA+ R+      R+  P  ++ R  S  G +    +IFVGGL   + +  FR YF  +G V D VVMYD++T R RGFGFI++D  D V +V+    HEL GK VEVK A P+D   P SGGG S S
Sbjct:    6 GKLFIGGISWETTEEKLKEYFGKYGDVSQTVIMRDKVSGRPRGFGFVVFADPSLIDRVLQDKHVIDGRTVEAKRALSREEQQTSVRSANP--SSGRSASGGGANIRTKKIFVGGLPPTLTEDGFRQYFQTYGNVTDVVVMYDQQTQRPRGFGFISFDTEDAVDRVLHKTFHELNGKLVEVKRALPKDA-NPSSGGGRSQS 202          
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A4Y7K2T8_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K2T8_PAPSO)

HSP 1 Score: 184 bits (467), Expect = 3.300e-50
Identity = 92/196 (46.94%), Postives = 124/196 (63.27%), Query Frame = 0
Query:   12 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQFSSRGGS-------QIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGGYS 200
            +GKIF+GG++W+T ++ LK HF K+G + + ++MR++ TG  RGFGFV F   S AD  L E+HVI GRT++VK+AVPR     P     + F+   G+       +IFVGGL   + + +F+AYF KFG+  D VVMYD  T R RGFGFIT+D+ + V  VM    HEL  K VEVK A P+DG      GGY+
Sbjct:    5 QGKIFVGGISWETNEDTLKDHFNKFGEVVETVIMRDRNTGSARGFGFVLFSDPSVADKVLLEKHVILGRTVEVKKAVPRGEHNNPY--NQKGFNKINGNNGQFRTKKIFVGGLSPSLTEEEFKAYFEKFGRTTDVVVMYDTTTHRPRGFGFITFDSEEAVENVMQKSFHELNDKVVEVKRAVPKDGSNSGHNGGYN 198          
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A2J6KGA2_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KGA2_LACSA)

HSP 1 Score: 184 bits (467), Expect = 3.550e-50
Identity = 93/199 (46.73%), Postives = 124/199 (62.31%), Query Frame = 0
Query:   12 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQFSSRGGS-----QIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGG---GYSGS 202
            EGK+FLGG+ W TT+E L  +FGK+G +S  ++MR+KITG PRGFGFV F   S  D+ L++ H IDGR ++ KRA+ R+     R  ++   SS GG      +IFVGGL   + +  FR YF  +G V D V+M+D+ T R RGFGFI++D  D V +V+    HEL  K VEVK A P+D   P  GG   GY G+
Sbjct:    5 EGKLFLGGIAWDTTEERLSDYFGKYGDVSQTVIMRDKITGRPRGFGFVVFSDPSVLDSVLQDRHTIDGRNVEAKRALSREEQQASRPGSNVSRSSGGGGTSRTKKIFVGGLPSTLTEEQFRQYFESYGDVTDVVIMFDQTTNRPRGFGFISFDTEDAVDRVLQKTFHELNNKLVEVKRALPKDA-NPGGGGRGGGYQGN 202          
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A2U1PIM4_ARTAN (Nucleotide-binding, alpha-beta plait n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PIM4_ARTAN)

HSP 1 Score: 187 bits (474), Expect = 3.900e-50
Identity = 91/191 (47.64%), Postives = 128/191 (67.02%), Query Frame = 0
Query:   12 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQFSSRGGS----QIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGG 198
            EGK+F+GG++W+T++E LK +FG +G +S  ++MR+KI+G PRGFGFV F   S  D  L+++H IDGRT++ KRA+ R+     +A       S GGS    +IFVGGL   +++  FR YF  +G+V D VVMYD++T R RGFGFI++D+ D V +V+    H+L GK VEVK A P+D   P  GGG
Sbjct:   51 EGKLFIGGISWETSEEKLKEYFGNYGDISQTVIMRDKISGRPRGFGFVVFSDPSVLDNVLQQKHTIDGRTVEAKRALSREEQQVSKAGNGSGGRSSGGSTRTKKIFVGGLPPTLSEEGFRQYFEAYGQVTDVVVMYDQQTNRPRGFGFISFDSEDAVDRVLHKTFHDLNGKQVEVKRALPKDA-NPGGGGG 240          
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: S8D6B9_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D6B9_9LAMI)

HSP 1 Score: 181 bits (459), Expect = 5.710e-50
Identity = 85/179 (47.49%), Postives = 123/179 (68.72%), Query Frame = 0
Query:   14 KIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQFSSRGGSQ---IFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGG-MHELKGKAVEVKTAAPR 188
            K+F+GG+ W+T++E  + +F K+G +SD ++M +K+TG PRGFGFV F     A+  L+++HVIDGR+++VKR VPR+           ++ SRG S+   IFVGGL   +N+ D R YF+ +G + +  +M D KTGRSRGFGF+T+D+ D V KV+S G MHEL GK VE+K A P+
Sbjct:    1 KLFVGGIAWETSEESFRRYFAKYGEISDSVIMMDKVTGRPRGFGFVTFSDQEVAEKVLQQDHVIDGRSVEVKRTVPRE-----------EYQSRGVSKTKKIFVGGLPVSMNEDDLREYFSSYGTIVEHQIMLDHKTGRSRGFGFVTFDSEDAVEKVLSDGRMHELSGKQVEIKRAEPK 168          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A199UZY9_ANACO2.820e-5048.00Heterogeneous nuclear ribonucleoprotein 1 n=1 Tax=... [more]
A0A4Y7K2T8_PAPSO3.300e-5046.94Uncharacterized protein n=2 Tax=Papaver somniferum... [more]
A0A2J6KGA2_LACSA3.550e-5046.73Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]
A0A2U1PIM4_ARTAN3.900e-5047.64Nucleotide-binding, alpha-beta plait n=2 Tax=Artem... [more]
S8D6B9_9LAMI5.710e-5047.49Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 111..183
e-value: 6.3E-22
score: 88.8
coord: 14..85
e-value: 6.6E-22
score: 88.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 112..169
e-value: 2.2E-15
score: 56.2
coord: 15..82
e-value: 7.2E-15
score: 54.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 13..89
score: 16.961
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 110..187
score: 17.285
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..100
e-value: 1.3E-25
score: 91.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 110..190
e-value: 3.8E-24
score: 86.7
NoneNo IPR availablePANTHERPTHR11176:SF13GENE 17190-RELATEDcoord: 7..104
NoneNo IPR availablePANTHERPTHR11176:SF13GENE 17190-RELATEDcoord: 50..306
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 50..306
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 7..104
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 13..109
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 110..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:37685..42660 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.258.1mRNA_F-serratus_M_contig102.258.1Fucus serratus malemRNAF-serratus_M_contig102 37112..43759 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig102.258.1 ID=prot_F-serratus_M_contig102.258.1|Name=mRNA_F-serratus_M_contig102.258.1|organism=Fucus serratus male|type=polypeptide|length=448bp
MSREEQQRADVEGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKIT
GEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATT
DRQFSSRGGSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRS
RGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGGYS
GSGGGGGYGGGYGGGGGGGYGGGGGYGSGGGGYGGQQGWSPQQGYGNRAG
GYGQSGGYGSRGSYGGQGGYSDRSGYGGGGYSQGGDRSQQSYGYGGQQGY
GYSQQSGYGGGGGGYGYGQQDQNYAAGGYSQQGYGQGQTAAQPSRTSSQT
GSAGGYSQTSTAQGYGAQTGYSQGYGQQQGYGTTGQAASSSYGASYGTDT
GNGSYGAGASTAAAGYGTAAVADQGGYGAYRGGGTTQSRQDRSYRPY*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR037366BOULE/DAZ
IPR035979RBD_domain_sf