prot_F-serratus_M_contig102.258.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig102.258.1
Unique Nameprot_F-serratus_M_contig102.258.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length448
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A1Y1IND2_KLENI (RNA-binding protein Musashi n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IND2_KLENI)

HSP 1 Score: 189 bits (479), Expect = 1.380e-51
Identity = 95/193 (49.22%), Postives = 127/193 (65.80%), Query Frame = 0 
Query:   13 GKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAP-QPRAT-TDRQFSSRGGSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRD--GPRPFSGGGYSG 201
            GK+F+GG++W+TT+E LK HF  +G + + I+M+++ TG  RGFGFV F   S AD  ++E+H IDGR ++ K+AVPRD  P  PR +   +QF ++   +IFVGGL   V + DFR+YF  FG + D VVMYD +T R RGFGFI++D    V  VM    HEL GK VEVK A P++  GP P  GG Y G
Sbjct:   17 GKLFVGGISWETTEERLKQHFEAYGEVVETIIMKDRATGRARGFGFVVFADPSIADQVVQEKHTIDGRQVEAKKAVPRDEQPGHPRTSGVGQQFRTK---KIFVGGLASTVTEEDFRSYFENFGTITDVVVMYDHQTQRPRGFGFISFDQESSVDTVMEKSFHELNGKTVEVKRAIPKELSGPSPSRGGAYGG 206
[Close]
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: UPI001C50233F (heterogeneous nuclear ribonucleoprotein 1-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C50233F)

HSP 1 Score: 187 bits (474), Expect = 1.440e-51
Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 0 
Query:   12 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQF------SSRGGS-------QIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDG 190
            + K+F+GG++W+T+DE LK HFGK+G + + ++MR+K TG  RGFGFV F   S AD AL+++HVI GRT++VK+AVPR    Q      +Q       SS GGS       +IFVGGL   + + +F++YF KFG+V D VVMYD  T R RGFGFIT+D+ + V  VM    HEL  K VEVK A P+DG
Sbjct:    5 QAKLFVGGISWETSDETLKDHFGKYGDVVESVIMRDKNTGSARGFGFVLFSDPSVADKALQDKHVILGRTVEVKKAVPRGDQHQHXXXXQQQNKGSIKNSSNGGSDNQFRTKKIFVGGLSSSLTEEEFKSYFEKFGRVTDVVVMYDSVTHRPRGFGFITFDSEEAVESVMQKNFHELNDKFVEVKRAVPKDG 196
[Close]
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A4D9D827_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D827_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.540e-51
Identity = 92/183 (50.27%), Postives = 129/183 (70.49%), Query Frame = 0 
Query:   14 KIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQP--------RATTDRQFSSRGGSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPR 188
            KIF+GG+ W TT+E L ++FGK+G L+DV+LMR+K TG PRGFGFV F   ++ +AA+ E H++DGR +DVK+AVPR++AP P         A   RQF      ++FVGGL  +V +  FRAYF KFG++ DAVVM D+ TGRSRGFGF+TY     ++KV+S   H+++G+ ++VK A P+
Sbjct:   46 KIFVGGVAWHTTEEGLSSYFGKYGELTDVVLMRDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQRQFQDI--KKVFVGGLSPDVTEEAFRAYFDKFGEITDAVVMMDRTTGRSRGFGFVTYAEEAAMKKVLSQ-QHDMEGRPMDVKRAEPK 225
[Close]
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A0P1AWA8_PLAHL (Heterogeneous nuclear ribonucleoprotein 1-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA8_PLAHL)

HSP 1 Score: 185 bits (469), Expect = 6.320e-51
Identity = 95/199 (47.74%), Postives = 137/199 (68.84%), Query Frame = 0 
Query:   13 GKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQ----FSSRG---------GSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGG 198
            GK+F+GG++W+TT++ L+ HFGK+G+L+D  LM++K TG+PRGFGFV F  AS+ D  L+E H +DGR+++VKRA+PR+R   P ++  R     +SS G           +IFVGGL   + + DFR YF +FG++ DAVVM D+ T RSRGFGFIT+++   V +V+S   HE+ GK+VE+K A P++     SGGG
Sbjct:  127 GKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERTA-PGSSEFRGARSGYSSNGXXXXGIFTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEVISKN-HEIHGKSVEIKRAEPKEA---RSGGG 320
[Close]
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A5A7PXB6_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PXB6_STRAF)

HSP 1 Score: 185 bits (470), Expect = 9.420e-51
Identity = 93/206 (45.15%), Postives = 132/206 (64.08%), Query Frame = 0 
Query:   12 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQFSSRGGSQ------------------IFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGGY 199
            + K+F+GG++W+TT+++L  HF K+G +S  ++ +++++G+PRGF FV F  +S+ D AL+E H I GRT++VKRA+PR         + +Q +SRG S+                  IFVGGL   + + +FR+YFAKFG++ D VVM+D  T R RGFGFITYD+ D V +VM    HEL GK VEVK A P+DG    SG GY
Sbjct:    6 QNKLFVGGISWETTEDILNEHFNKYGVVSGSVIAKDRVSGQPRGFAFVTFSESSAVDRALQESHQILGRTVEVKRAIPRS-----EQQSQQQHNSRGLSRNFSGTNKGRNTDEFRTKKIFVGGLSTNLTEQEFRSYFAKFGRITDVVVMHDNMTHRPRGFGFITYDSEDSVEEVMQKNFHELAGKLVEVKRAVPKDGSN-SSGNGY 205
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BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A836CCM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCM9_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.330e-50
Identity = 93/194 (47.94%), Postives = 129/194 (66.49%), Query Frame = 0 
Query:   10 DVEGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPR---DRAPQPRATTDRQFSSRGGSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGGYS 200
            D EGK+F+GG+ W TTD +LK +F K+G + ++ LM++K+TG PRGF F++F+  +  +  + ++H+IDGR +DVK+AVPR   +R   P+A T  +        IFVGGLDQ VND DFR +F K+GKV D V+MYDK T RSRGFGF+T++    ++  +    H LK KAVEVK AAPR+        GYS
Sbjct:  123 DSEGKVFVGGIGWSTTDAVLKVYFEKFGVVEEIALMKDKLTGHPRGFAFIKFKDPAVTETVVTQQHIIDGRNVDVKKAVPRSQKERRDAPKAPTSLK--------IFVGGLDQAVNDEDFRKHFEKYGKVSDCVIMYDKITKRSRGFGFVTFEAEADIKACLKDS-HVLKDKAVEVKEAAPREQREQQQRSGYS 307
[Close]
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A225W0H2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W0H2_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.720e-50
Identity = 93/187 (49.73%), Postives = 130/187 (69.52%), Query Frame = 0 
Query:   13 GKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQ------FSSRGG----SQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRD 189
            GK+F+GG++W+TT++ L+ HFGK+GSL+D  LM++K TG+PRGFGFV F  AS+ D  L E H +DGR+++VKRA+PR+R   P ++  R       F   GG     +IFVGGL   V + DFR YF +FGK+ DAVVM D+ T RSRGFGFIT++    V +V+S   H++ GK+VE+K A P++
Sbjct:  104 GKLFIGGVSWETTEDTLRQHFGKYGSLTDAALMKDKYTGQPRGFGFVTFADASAIDRVLDEAHTLDGRSVEVKRAIPRERTA-PGSSDFRSGRSGFGFGGGGGFTEQKKIFVGGLAPTVTEQDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEEESSVAEVISKN-HDIHGKSVEIKRAEPKE 288
[Close]
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: I1I4K8_BRADI (Uncharacterized protein n=18 Tax=Pooideae TaxID=147368 RepID=I1I4K8_BRADI)

HSP 1 Score: 186 bits (473), Expect = 1.810e-50
Identity = 94/199 (47.24%), Postives = 125/199 (62.81%), Query Frame = 0 
Query:   12 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQFSSRGG------------SQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGG 198
            +GK+F+GG++W+TT+E L  HF  +G +S   +MR+K+TG PRGFGFV +   ++ DAAL E H +DGRT+DVKRA+ R+     +A       + GG             +IFVGGL   + D +FR YF  FG V D VVMYD+ T R RGFGFIT+D+ D V +V+    H+L GK VEVK A PR+   P SGGG
Sbjct:    5 QGKLFIGGISWETTEEKLHEHFSTFGEVSQAAVMRDKLTGRPRGFGFVVYADPAAVDAALLEPHTLDGRTVDVKRALSREEQQASKAVNPSTGRNTGGXXXXNDASGTRTKKIFVGGLPSSLTDDEFRQYFQTFGAVTDVVVMYDQTTQRPRGFGFITFDSEDAVDRVLHKTFHDLGGKMVEVKRALPREA-NPGSGGG 202
[Close]
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: A0A1V9ZI01_9STRA (DAZ-associated protein 1-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZI01_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.970e-50
Identity = 96/201 (47.76%), Postives = 135/201 (67.16%), Query Frame = 0 
Query:   12 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRD-RAPQPRATTDRQFSSR-GGS------QIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGG---GYSG 201
            +GKIF+GG++W+TT++ L++HFGK+G+L+D  LM++K +G+PRGFGFV F+  S  D  L + H++DGR ++VKRAVPRD +  +P+      +S R  GS      +IFVGGL   V + DFR YF  +GK+ DA+VM D+ T RSRGFGF+T++    V +V+S   HEL GK VE+K A P+   R   GG   GY G
Sbjct:   75 QGKIFVGGVSWETTEDNLRSHFGKYGNLTDAALMKDKYSGQPRGFGFVTFEDPSVIDRVLGDTHMLDGRNVEVKRAVPRDSQGARPQGGASSGYSDRFAGSGRTESKKIFVGGLPPSVTNDDFRTYFEDYGKITDAIVMMDRDTQRSRGFGFVTFEEEGAVAEVISKS-HELHGKVVEIKRAEPKGEMRGGRGGYDSGYGG 274
[Close]
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Match: W9QSX8_9ROSA (DAZ-associated protein 1 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9QSX8_9ROSA)

HSP 1 Score: 186 bits (471), Expect = 2.260e-50
Identity = 96/205 (46.83%), Postives = 128/205 (62.44%), Query Frame = 0 
Query:   12 EGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKITGEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATTDRQFSSRGGS--------QIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGG------GYSGS 202
            EGK+F+GG+ W TT+E L+ +FG++G ++  ++MR+K TG PRGFGFV F   S  D  L ++H IDGRT++ KRA+ R+   Q  + T    SSRG          +IFVGGL   + +  FR +F  FG V D V+MYD+ T R RGFGFIT+D+ D V +V+    HEL GKAVEVK A P+D   P  GG      GYSG+
Sbjct:    5 EGKLFIGGIAWDTTEENLRDYFGQYGEVTQTVIMRDKTTGRPRGFGFVVFSDPSVLDTVLNDKHTIDGRTVEAKRALSREEQ-QTSSKTGNFSSSRGSGGGGNFKTKKIFVGGLPSSLTEDGFRQFFESFGNVTDVVIMYDQSTQRPRGFGFITFDSEDAVDRVLYKNFHELNGKAVEVKRALPKDA-NPGGGGRGGGYQGYSGA 207
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1IND2_KLENI1.380e-5149.22RNA-binding protein Musashi n=1 Tax=Klebsormidium ... [more]
UPI001C50233F1.440e-5149.48heterogeneous nuclear ribonucleoprotein 1-like n=1... [more]
A0A4D9D827_9STRA2.540e-5150.27Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0P1AWA8_PLAHL6.320e-5147.74Heterogeneous nuclear ribonucleoprotein 1-like iso... [more]
A0A5A7PXB6_STRAF9.420e-5145.15RNA-binding (RRM/RBD/RNP motifs) family protein n=... [more]
A0A836CCM9_9STRA1.330e-5047.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A225W0H2_9STRA1.720e-5049.73Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
I1I4K8_BRADI1.810e-5047.24Uncharacterized protein n=18 Tax=Pooideae TaxID=14... [more]
A0A1V9ZI01_9STRA1.970e-5047.76DAZ-associated protein 1-like n=1 Tax=Achlya hypog... [more]
W9QSX8_9ROSA2.260e-5046.83DAZ-associated protein 1 n=1 Tax=Morus notabilis T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 111..183
e-value: 6.3E-22
score: 88.8
coord: 14..85
e-value: 6.6E-22
score: 88.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 112..169
e-value: 2.2E-15
score: 56.2
coord: 15..82
e-value: 7.2E-15
score: 54.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 13..89
score: 16.961
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 110..187
score: 17.285
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..100
e-value: 1.3E-25
score: 91.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 110..190
e-value: 3.8E-24
score: 86.7
NoneNo IPR availablePANTHERPTHR11176:SF13GENE 17190-RELATEDcoord: 7..104
NoneNo IPR availablePANTHERPTHR11176:SF13GENE 17190-RELATEDcoord: 50..306
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 50..306
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 7..104
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 13..109
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 110..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:37685..42660 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.258.1mRNA_F-serratus_M_contig102.258.1Fucus serratus malemRNAF-serratus_M_contig102 37112..43759 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig102.258.1 ID=prot_F-serratus_M_contig102.258.1|Name=mRNA_F-serratus_M_contig102.258.1|organism=Fucus serratus male|type=polypeptide|length=448bp
MSREEQQRADVEGKIFLGGLTWQTTDEMLKTHFGKWGSLSDVILMRNKIT
GEPRGFGFVQFQHASSADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATT
DRQFSSRGGSQIFVGGLDQEVNDSDFRAYFAKFGKVEDAVVMYDKKTGRS
RGFGFITYDNPDVVRKVMSGGMHELKGKAVEVKTAAPRDGPRPFSGGGYS
GSGGGGGYGGGYGGGGGGGYGGGGGYGSGGGGYGGQQGWSPQQGYGNRAG
GYGQSGGYGSRGSYGGQGGYSDRSGYGGGGYSQGGDRSQQSYGYGGQQGY
GYSQQSGYGGGGGGYGYGQQDQNYAAGGYSQQGYGQGQTAAQPSRTSSQT
GSAGGYSQTSTAQGYGAQTGYSQGYGQQQGYGTTGQAASSSYGASYGTDT
GNGSYGAGASTAAAGYGTAAVADQGGYGAYRGGGTTQSRQDRSYRPY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR037366BOULE/DAZ
IPR035979RBD_domain_sf