prot_F-serratus_M_contig1014.227.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1014.227.1
Unique Nameprot_F-serratus_M_contig1014.227.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length379
Homology
BLAST of mRNA_F-serratus_M_contig1014.227.1 vs. uniprot
Match: A0A523E4D4_9BACT (23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523E4D4_9BACT)

HSP 1 Score: 258 bits (659), Expect = 2.840e-80
Identity = 151/340 (44.41%), Postives = 204/340 (60.00%), Query Frame = 0
Query:   33 ELLSLGLDEMAEIIGGSGRAKMVWTALAEGIDPFSSQAGSDYLTPKTTEQLNKAVESSGLPWQVVRESVSLCGTRKLLIRLEDGLDVETVIIPCLTGSRSTVCVSSQIGCAKGCQFCMTGKMGFVRNLTAGEILGQVFFARQAVRLHHLPPLSNAVYMGMGEPLDNPVAVKRSLELLTHPHAFAMARSKVSVSTVGPSPSAILRMRGMACRLAWSVHAATDDVRRLLVPTTSHTMAELRDAFGEVLESRRKEHLFVEVVLIDGVNDSPDQAEALAALLKPLPTRASVNLLPYNDTGHPAFRASSREAVSKFQKILTEHGYVATIRTARGDNESSACGQLA 372
            ELL+L  +E+AE++GG+GRA+ VW A+ +G DPF     S  +  +   Q      +   P+ V R  +++CGT KL + L     +ETV+IP  +  R+TVCVS+Q GCA+GC FC+T  MG  R LTAGEI+GQV  A   +R  HLP + N V+MGMGEPLDN  AV++S+ +L  P   A+  + +++STVG +P+AIL  R +  +LAWS+HA  D +RR LVPT  H+   LR AF + L S     LFVE+ L+DGVND+   A+ L   L P      VNLLP N  G     AS    V  F++ L + G   TIR  RG    +ACGQLA
Sbjct:    3 ELLALTPEELAELLGGTGRARAVWRAMLQGKDPFEDPGLSRPVRARLRAQ------TFPTPFFVERRDIAVCGTTKLRLVLAGKKRIETVLIP--SKRRTTVCVSTQSGCARGCVFCLTATMGLERGLTAGEIVGQVLLA---MREAHLPAIRNVVFMGMGEPLDNLDAVRKSVAVLCDPSGLALGPTHITLSTVGTTPAAILATRDLPVQLAWSLHAVDDALRRRLVPTMRHSTESLRQAFVDRL-SESGGSLFVEMTLMDGVNDALHHADELIEFLAPFSPSVRVNLLPMN-AGREGLHASPEPRVKAFRQRLRDRGLFCTIRRPRGVEARAACGQLA 329          
BLAST of mRNA_F-serratus_M_contig1014.227.1 vs. uniprot
Match: L1IK87_GUITC (Radical SAM core domain-containing protein n=4 Tax=Geminigeraceae TaxID=589343 RepID=L1IK87_GUITC)

HSP 1 Score: 257 bits (657), Expect = 2.420e-79
Identity = 152/369 (41.19%), Postives = 218/369 (59.08%), Query Frame = 0
Query:   39 LDEMAEIIGGSGRAKMVWTALAEGIDPFSSQAGSDYLTPKTTEQLNKAVESSGLPWQVVRESVSLCGTRKLLIRLEDGLDVETVIIP--------CLTGSRSTVCVSSQIGCAKGCQFCMTGKMGFVRNLTAGEILGQVFFARQAVRLHHLPPLSNAVYMGMGEPLDNPVAVKRSLELLTHPHAFAMARSKVSVSTVGPSPSAILRMRGMACRLAWSVHAATDDVRRLLVPTTSHTMAELRDAFGEVLESRRKEHLFVEVVLIDGVNDSPDQAEALAALLKPL--------------------PTRASVNLLPYNDTGHPAFRASSREAVSKFQKILTEHGYVATIRTARGDNESSACGQLATLFKNGR 379
            L ++ E++GG+G+AK+VW ++  G DP++ +     +T K  ++L +  +       V R S   CGT KLLI ++DG+++E+V+IP         +   R+T+CVSSQ+GC + C FC TGKMGF+R LT+ EIL QV+ A + ++  +LPPL N V+MGMGEPL+N V    + E+LT  + F MA+++V+VS+VGPSP+ I    G+   LAWSVHAA D  R  LVPTT++TM ELRD  GE + S       V V LIDG+NDS +QA+ L  LL PL                      +  V+L+PYND G       + +   +      E G+   +R  RGD++S+ACGQLAT  K+ R
Sbjct:   27 LPDLGELLGGTGKAKLVWASIRAGRDPWTDET----VTEKARKKLKENFQEIPRVSHVTRAS---CGTIKLLIAMQDGMEIESVVIPHEGRPTAASVVEPRTTLCVSSQVGCNRACSFCATGKMGFIRQLTSHEILSQVYIALRCIKEENLPPLHNIVFMGMGEPLNNFV---NACEVLTDQNCFQMAKNRVTVSSVGPSPAVIRAAAGIPAMLAWSVHAADDTTRSKLVPTTANTMVELRDQ-GERMTS-------VAVTLIDGINDSVEQADQLMKLLTPLLEQGPALMPAESLLRFHVLAGLKVCVDLIPYNDIGTEDCTPPA-DVHLQVPAAHHERGFACFVRVTRGDDQSAACGQLATSSKSSR 376          
BLAST of mRNA_F-serratus_M_contig1014.227.1 vs. uniprot
Match: A0A7S4RUD1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RUD1_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.910e-77
Identity = 168/409 (41.08%), Postives = 236/409 (57.70%), Query Frame = 0
Query:   28 SISSDELLSLG-----LDEMAEIIGGSGRAKMVWTALAEGIDP--FSSQAGSDYLTPKTTEQLNKAVES-------------------------------------SGLPWQVVRESVSLCGTRKLLIRLE-DGLDVETVIIPCLTGSRSTVCVSSQIGCAKGCQFCMTGKMGFVRNLTAGEILGQVFFARQAVRL-------HHLPP-LSNAVYMGMGEPLDNPVAVKRSLELLTHPHAFAMARSKVSVSTVGPSPSAILRMRGMACRLAWSVHAATDDVRRLLVPTTSHTMAELRDAFGEVLESRRK--EHLFVEVVLIDGVNDSPDQAEALAALLKPL------PT-RASVNLLPYNDTGHPA-FRASSREAVSKFQKILTEHGYVATIRTARGDNESSACGQLAT 373
            S SS++ ++LG     + E+ + +GG GRA++VW     GIDP  F S   S    P TT  L+K + S                                      G    +   S S  GT K+LI LE DGL+VE+VIIP      ST+CVSSQ+GC +GC FC TGKMG  R+LT  EIL QVF+A++  RL         LPP +SN V+MGMGEP DN  AV R++ +LT    F+ AR ++++STV PSP + LR++ +   LAWS+HAA D  RR LVPT ++++ EL++A  EVL+ R K  +++ +EV L++ VNDSP+ A  +A + + +      PT +  VNL+PYNDTG    +   S+E V ++Q++L + G  A +R  RGD+ES+ACGQLAT
Sbjct:   56 SSSSEKEITLGAISSTIPELTKSLGGKGRAQLVWDCYKIGIDPALFFSSTNSPPPLP-TTPLLSKFISSFETHQDILNLLPTSRQTQTLGKTALDALANTYNGTVLEGGVASLSHLSTSEDGTVKMLITLEQDGLEVESVIIPWFERGWSTLCVSSQVGCRQGCTFCATGKMGLKRSLTTNEILAQVFYAKKITRLFSSSSSNQKLPPDISNIVFMGMGEPTDNLSAVTRAISILTDETLFSFARQQITLSTVAPSPQSFLRLKEVPAVLAWSIHAANDVKRRQLVPTATYSVQELKEALIEVLKGRCKNLQNVMLEVALLNHVNDSPEDALEMANVAQDIIKAVDNPTMKLMVNLIPYNDTGGGIKYTKPSKERVLQYQEVLWKRGIYAHVRETRGDDESAACGQLAT 463          
BLAST of mRNA_F-serratus_M_contig1014.227.1 vs. uniprot
Match: B7FTW5_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTW5_PHATC)

HSP 1 Score: 249 bits (636), Expect = 2.730e-77
Identity = 141/292 (48.29%), Postives = 190/292 (65.07%), Query Frame = 0
Query:   97 VRESVSLCGTRKLLIRLEDGLDVETVIIPCLTGSRSTVCVSSQIGCAKGCQFCMTGKMGFVRNLTAGEILGQVFFARQAVRLHHLPPLSNAVYMGMGEPLDNPVAVKRSLELLTHPHAFAMARSKVSVSTVGPSPSAILRMRGMACRLAWSVHAATDDVRRLLVPTTSHTMAELRDAFGEVL--ESRRKEHLFVEVVLIDGVNDSPDQAEALA----ALLKPLP-TRASVNLLPYNDTGH---PA--FRASSREAVSKFQKILTEHGYVATIRTARGDNESSACGQLATLFK 376
            V ESV+  GT KLL++L DGL VETVIIP     RST+CVSSQ+GC + C FC+TG+MG +R+L+A EIL QV  A++A R +++ P+ N V+MGMGEP DN  AV R+  +LTH   F +   ++++STV PSP A L++      LAWSVHA+ + VRR LVPTT +TM ELR+ + + L   SR      +EV L+D +NDS + AE LA     LLK +P  +  VNL+P+ND      PA  +R  + E + +FQK L   G +  +RT RGD+E +ACGQLAT  K
Sbjct:    1 VHESVAADGTTKLLLQLVDGLQVETVIIPWDERQRSTLCVSSQVGCRQACTFCLTGRMGILRSLSADEILVQVLLAKRACRENNIYPIDNIVFMGMGEPADNTDAVVRAANVLTHQQQFQLTPRRITISTVAPSPDAFLKLGKAPVALAWSVHASREAVRRELVPTTKYTMEELREGYIKALLDRSRSMRTTMLEVTLLDKINDSLEDAEHLADFCQPLLKSVPGIKLVVNLIPWNDISASFGPASVYRKPTTERIGEFQKALIGRGILCYVRTTRGDDEGAACGQLATTNK 292          
BLAST of mRNA_F-serratus_M_contig1014.227.1 vs. uniprot
Match: A0A448Z5E9_9STRA (Radical SAM core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5E9_9STRA)

HSP 1 Score: 254 bits (648), Expect = 3.600e-76
Identity = 158/411 (38.44%), Postives = 222/411 (54.01%), Query Frame = 0
Query:   34 LLSLGLDEMAEIIGGSGRAKMVWTALAEGIDPF-------------SSQAGSDYL---TPKTTEQLNKAVESSGLPWQVVRE-----------------------SVSLCGTRKLLIRL-EDGLDVETVIIPCLTGSRSTVCVSSQIGCAKGCQFCMTGKMGFVRNLTAGEILGQVFFARQAVRLHHLP----------------PLSNAVYMGMGEPLDNPVAVKRSLELLTHPHAFAMARSKVSVSTVGPSPSAILRMRGMACRLAWSVHAATDDVRRLLVPTTSHTMAELRDAFGEVLESRRKE--HLFVEVVLIDGVNDSPDQAEALAALLKPL---PT-----RASVNLLPYNDTGH---PA--FRASSREAVSKFQKILTEHGYVATIRTARGDNESSACGQLAT 373
            LLS   +E+ +++GGSG+AK  W  L  GIDP              + + GSD L   T    E+   A  + G P ++ +                        SVS  GT KLL++L  DGL+VETVIIP     +ST+CVSSQ+GC +GC FC TG+MG +RNL+  EI  Q+++A +  RL  LP                P+ N V+MGMGEP DN  +V ++  ++   + F +A  K+++STV PSP     +      LAWSVH + D++RR LVPTT H+M ELRD   +VL  R K   +  +EV L+DG+NDS + A  LA   +P    PT     + +VNL+P+ND      PA  +R    E +  +QKIL E+G +  +RT RGD E++ACG L+T
Sbjct:  113 LLSYSFEELTDLLGGSGKAKACWDCLRMGIDPIWYYGNQRDDDESNTERTGSDLLKGWTRGMVEERLAATSTRGTPTKLGKSTLDLLEQIGGSKVEEDVCKLSQVSVSPDGTTKLLLQLASDGLEVETVIIPWEDRGKSTLCVSSQVGCRQGCTFCSTGRMGKLRNLSTAEIAAQMYWANKVYRLSSLPENQEQSTSNNNSKKLYPIDNCVFMGMGEPADNAPSVVKTASMMADNNLFQLAPRKITISTVAPSPEVFRELAEAPAVLAWSVHCSRDEIRRQLVPTTRHSMEELRDGLMDVLRGRTKRLRNTMLEVTLLDGINDSEEDARHLADFCRPFFEGPTAIRGIKLTVNLIPWNDISASFGPASGYRPPKPERIRAYQKILGENGILCYVRTTRGDEENAACGMLST 523          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1014.227.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523E4D4_9BACT2.840e-8044.4123S rRNA (Adenine(2503)-C(2))-methyltransferase Rl... [more]
L1IK87_GUITC2.420e-7941.19Radical SAM core domain-containing protein n=4 Tax... [more]
A0A7S4RUD1_9STRA1.910e-7741.08Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B7FTW5_PHATC2.730e-7748.29Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A448Z5E9_9STRA3.600e-7638.44Radical SAM core domain-containing protein n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007197Radical SAMPFAMPF04055Radical_SAMcoord: 137..299
e-value: 2.8E-11
score: 44.1
IPR004383Ribosomal RNA large subunit methyltransferase RlmN/CfrPIRSFPIRSF006004Cfrcoord: 31..378
e-value: 7.2E-80
score: 266.3
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 94..362
e-value: 2.9E-85
score: 287.7
IPR040072Methyltransferase (Class A)PANTHERPTHR3054423S RRNA METHYLTRANSFERASEcoord: 48..376
NoneNo IPR availableSUPERFAMILY102114Radical SAM enzymescoord: 129..335

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1014contigF-serratus_M_contig1014:25005..34905 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1014.227.1mRNA_F-serratus_M_contig1014.227.1Fucus serratus malemRNAF-serratus_M_contig1014 25005..34905 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1014.227.1 ID=prot_F-serratus_M_contig1014.227.1|Name=mRNA_F-serratus_M_contig1014.227.1|organism=Fucus serratus male|type=polypeptide|length=379bp
MRGSKASPPSSFNSIPAESSNPRCRSPSISSDELLSLGLDEMAEIIGGSG
RAKMVWTALAEGIDPFSSQAGSDYLTPKTTEQLNKAVESSGLPWQVVRES
VSLCGTRKLLIRLEDGLDVETVIIPCLTGSRSTVCVSSQIGCAKGCQFCM
TGKMGFVRNLTAGEILGQVFFARQAVRLHHLPPLSNAVYMGMGEPLDNPV
AVKRSLELLTHPHAFAMARSKVSVSTVGPSPSAILRMRGMACRLAWSVHA
ATDDVRRLLVPTTSHTMAELRDAFGEVLESRRKEHLFVEVVLIDGVNDSP
DQAEALAALLKPLPTRASVNLLPYNDTGHPAFRASSREAVSKFQKILTEH
GYVATIRTARGDNESSACGQLATLFKNGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007197rSAM
IPR004383rRNA_lsu_MTrfase_RlmN/Cfr
IPR013785Aldolase_TIM
IPR040072Methyltransferase_A