prot_F-serratus_M_contig1013.220.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1013.220.1
Unique Nameprot_F-serratus_M_contig1013.220.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length345
Homology
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Match: UPI00031A0755 (ribonuclease R n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=UPI00031A0755)

HSP 1 Score: 240 bits (612), Expect = 5.520e-70
Identity = 141/333 (42.34%), Postives = 200/333 (60.06%), Query Frame = 0
Query:    8 VDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGAGKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAG 340
            + +PPPDP+A+ R DLTHLKVY VD   T E+DDGLS+ETL +G    +WVHIAD +RW+  G  L  E+R R TT YLP G +PMFP E+A G +SL  G  C ALS GI L +DG+I D T+ P+L++ TYRLTY+DV++ML  GI   + E +L  L   A++R ++R  +G++          +   ED       D+ I   +  S + ++V EMM+L GE     G    +A+P+R+Q  P++  +EEL S+P  + R  A  + M  +    +P +H  LGLESY Q +SPIRR+LDL+ H+Q+K  L G      S  + E+  G
Sbjct:  255 LQSPPPDPDAQ-RLDLTHLKVYTVDDVSTQEIDDGLSLETLADGSHR-LWVHIADPTRWLMPGDDLDLEARRRCTTVYLPTGMIPMFPVELATGAMSLIQGHICCALSFGIDLTDDGDIRDYTIHPTLIRPTYRLTYDDVDEMLELGI---TAEPELQGLAHWAKVRGQWRMTQGAISINMPESSIKVSEAED-------DIVIEVFN-DSMARQMVAEMMILAGEVAARYGQAHALAIPFRSQPQPELPSDEELISLPTGWVRDSAIRRCMTRSEVGVTPSRHATLGLESYSQVTSPIRRYLDLVTHFQLKAHLRGEPLPFSSTEVTELAIG 574          
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Match: A0A6P0YX02_9CYAN (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Merismopedia sp. SIO2A8 TaxID=2607779 RepID=A0A6P0YX02_9CYAN)

HSP 1 Score: 239 bits (609), Expect = 1.230e-69
Identity = 141/316 (44.62%), Postives = 198/316 (62.66%), Query Frame = 0
Query:   13 PDPEAETRR-DLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGAGKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITP-EDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRE 326
            P P+A+ +R DLTHLKV  +D E T E+DDGLS+E L +G  + IW+HIAD SRW+  G  +  E+R R TT YLP G +PMFP E+A G +SL  G+ C+ALS G+ L E+G IAD  + PSL+K TYRLTY+DV+++L  G+     E +L  L + ++ R R+R  +G+V    +  +  IK  +D       ++ IT  ED +SR  ++V EMM+L GE  G  G    +ALP+R Q  P++ PEEEL  +P    R  A  + M+ +    +P +H GLGL++Y Q +SPIRR+ DLL H+QIK  L G E
Sbjct:  257 PIPDADEQRLDLTHLKVSTIDDESTREIDDGLSIEFLDDGR-QRIWIHIADPSRWIARGDAIDLEARRRSTTIYLPTGIIPMFPPELATGPMSLVQGEVCHALSFGVILDENGAIADYEIHPSLIKPTYRLTYDDVDEILQLGV---EAEPELEALYQWSKRRERWRLEQGAVS--IRMPEASIKVQDD-------EITITVLEDSASR--QMVAEMMILTGEIAGHYGQEHNLALPFRGQPQPELPPEEELMVLPAGPVRDSAVRRCMSRSEMGITPLRHAGLGLDTYTQSTSPIRRYTDLLCHFQIKAHLRGDE 557          
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Match: A0A352X5K1_9CYAN (RNB domain-containing ribonuclease (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11367 TaxID=2055774 RepID=A0A352X5K1_9CYAN)

HSP 1 Score: 234 bits (597), Expect = 1.780e-69
Identity = 146/324 (45.06%), Postives = 192/324 (59.26%), Query Frame = 0
Query:    1 MEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGAGKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSG 324
            +E  +  ++ PPPDP+ E R DLTHLKVY +D E T E+DDGLS+ETL +G  E +W+HIAD +R V  G  L  E+R R TT YLP G +PMFP E+A G +SL  GK C ALS G+ L E G I + ++  SL+K TYRLTY+DV++ML  GI   SE   +  + + AQ R R R  +GS+         +IK       N    + +  +   SRS  LV EMM+L GE  G  G    I LP+R Q  P++ P EEL  +P    R  A    M  +  + +P +H GLGLE+Y Q +SPIRR+ DLLAH+QIK  L G
Sbjct:   72 LELAQQRLNFPPPDPDEE-RLDLTHLKVYTIDDESTQEIDDGLSLETLSDGR-EKLWIHIADPTRLVMPGDELDLEARRRSTTLYLPTGMIPMFPPELATGPMSLVEGKICPALSFGVILDEIGSIQEYSIHASLIKPTYRLTYQDVDEMLELGIKGESE---IEAIAKWAQRRERLRQAQGSITIHMPEA--VIKVCN----NDEIAIDVLED---SRSRLLVAEMMILAGEVGGRYGQTHQIPLPFRGQPQPELPPYEELAQLPAGPVRFCAMRSRMPRSEMSITPVRHAGLGLETYTQVTSPIRRYSDLLAHFQIKAHLRG 381          
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Match: UPI0019FFB23C (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019FFB23C)

HSP 1 Score: 238 bits (608), Expect = 1.930e-69
Identity = 138/329 (41.95%), Postives = 196/329 (59.57%), Query Frame = 0
Query:   12 PPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGAGKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAG 340
            PPDP+ + R DL  LKVY VD E T E+DDG+S+ETL +G  + IW+HIAD +RWV  G  L  E+R R TT YLP G +PMFP E+A G +SL  G+EC ALS G+ L EDG + +  +T SL+K TYRLTYEDV++ML  GI     E +L  +   A++R R+R  +G++       +  IK T++       D+++  + P+ +   ++ EMM+L G+     G    + +P+R+Q  P++  +EEL  +P    R  A  + M  +    +P +H  LGLESY Q +SPIRR+ DLLAH+QIK  L G      S  M E+  G
Sbjct:  258 PPDPDDDARLDLRALKVYTVDDESTQEIDDGISLETLTDGR-QRIWIHIADPTRWVLPGDALDLEARRRCTTLYLPTGMVPMFPLELAAGPMSLTQGRECCALSFGVVLSEDGAVEEYCITASLIKPTYRLTYEDVDEMLDLGI---QAEPELLAIAHWAKVRQRWRATQGAISIHMP--ETSIKVTDEDV----IDIRVFDDSPARQ---MIAEMMILAGDVAARYGQSHNLVMPFRSQPQPELPSDEELMQLPTGLVRDCAIRRCMPRSEMGITPARHATLGLESYSQVTSPIRRYTDLLAHFQIKAHLRGEPLPFSSTEMTELTQG 573          
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Match: A0A6H5KI93_9PHAE (RNB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI93_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 2.780e-69
Identity = 113/157 (71.97%), Postives = 128/157 (81.53%), Query Frame = 0
Query:  196 KATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQA-------AYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAGEGTVQ 345
            +A EDPS  GGY VK+ PEDPS RSIRLVTEMMVLVGEGMG VG + GI LP+R+QKAPD FPE +L  +P KYCRAQA       AYKYM+SA TAT+PQ HWGLGL+SYVQWSSPIRR+LDLLAHYQ+KRWL G+ TL GS +MAEVEAG+G VQ
Sbjct:   15 RAVEDPSVPGGYAVKVIPEDPSCRSIRLVTEMMVLVGEGMGSVGGKEGIPLPFRHQKAPDNFPEADLELLPEKYCRAQASRGAVSGAYKYMSSATTATTPQPHWGLGLDSYVQWSSPIRRYLDLLAHYQVKRWLLGQPTLDGSLVMAEVEAGDGAVQ 171          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00031A07555.520e-7042.34ribonuclease R n=2 Tax=Pseudanabaenales TaxID=2881... [more]
A0A6P0YX02_9CYAN1.230e-6944.62VacB/RNase II family 3'-5' exoribonuclease n=1 Tax... [more]
A0A352X5K1_9CYAN1.780e-6945.06RNB domain-containing ribonuclease (Fragment) n=1 ... [more]
UPI0019FFB23C1.930e-6941.95VacB/RNase II family 3'-5' exoribonuclease n=1 Tax... [more]
A0A6H5KI93_9PHAE2.780e-6971.97RNB domain-containing protein n=1 Tax=Ectocarpus s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001900Ribonuclease II/RSMARTSM00955RNB_2coord: 20..324
e-value: 1.1E-74
score: 264.1
IPR001900Ribonuclease II/RPFAMPF00773RNBcoord: 20..323
e-value: 1.1E-63
score: 215.5
NoneNo IPR availablePANTHERPTHR23355RIBONUCLEASEcoord: 14..324
NoneNo IPR availablePANTHERPTHR23355:SF42EXORIBONUCLEASE II, MITOCHONDRIALcoord: 14..324
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..327

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1013contigF-serratus_M_contig1013:191671..202549 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1013.220.1mRNA_F-serratus_M_contig1013.220.1Fucus serratus malemRNAF-serratus_M_contig1013 191651..202549 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1013.220.1 ID=prot_F-serratus_M_contig1013.220.1|Name=mRNA_F-serratus_M_contig1013.220.1|organism=Fucus serratus male|type=polypeptide|length=345bp
MEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPN
GGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAH
GVLSLGAGKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDM
LANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATED
PSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRN
QKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYV
QWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAGEGTVQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001900RNase_II/R
IPR012340NA-bd_OB-fold