prot_F-serratus_M_contig100.110.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig100.110.1
Unique Nameprot_F-serratus_M_contig100.110.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length469
Homology
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Match: A0A5A8ENP4_CAFRO (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8ENP4_CAFRO)

HSP 1 Score: 463 bits (1192), Expect = 1.680e-157
Identity = 252/436 (57.80%), Postives = 311/436 (71.33%), Query Frame = 0
Query:   36 SGCPGQQVRRLNVHEYVSMQIMADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLSGGRGRGHFDNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCNKARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLAESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKT-------LLKNMYTMFDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAKNIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKAVAVAEIYSQAVKVGIDVELQ 464
            + C  Q+ R LNVHE+V M++M   +I +P   +A TPE AE+  +    G E  DVVIKAQ+L+GGRG G F NGF+ GVH+   P +ARE A KMLG +L+TKQTG +G    +       V LMER+Y+RREMY SI++DRAS GPV+VA P GGT+IED+AE  PE I KE  D+ EG +  Q  ++A      G  F  G          + N+Y MF E D T VEINPLAET DG V  CDAKLNFDDNAE+RQ E F  RD +QED REVEAAK+DLNYIGL GNIGCMVNGAGLAM+TMDIIKL GG+PANFLDVGGGA E+QV++A  +LD+DP V TILVNIFGGIMRCDVIA G+I AAK++GL+KP+V+RLQGTNVE A  +I  S  ++I+ +DL++AA KAV +AEI  QA ++ IDV  +
Sbjct:   40 TSCAAQR-RHLNVHEHVGMELMRKFDIPVPRGSVATTPEEAEEVHRSHLAGGEKADVVIKAQILAGGRGLGTFVNGFQGGVHVVTMPGQAREMAAKMLGQRLVTKQTGPSGREVTR-------VYLMERLYMRREMYFSIVLDRASGGPVLVASPKGGTAIEDVAEKTPEFIFKEACDLEEGPSAEQLTRLAV-----GMGFAEGSRGIDECVQAMSNIYRMFRELDATQVEINPLAETPDGHVFVCDAKLNFDDNAEFRQSEVFELRDPTQEDPREVEAAKHDLNYIGLDGNIGCMVNGAGLAMATMDIIKLHGGNPANFLDVGGGATEQQVKEALRILDADPGVQTILVNIFGGIMRCDVIAQGIIAAAKDVGLRKPLVVRLQGTNVEAAKRVIEASDVRIIMEDDLDEAAKKAVGLAEIVRQANQIKIDVHFE 462          
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Match: A0A024GFW4_9STRA (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=2 Tax=Albugo TaxID=65356 RepID=A0A024GFW4_9STRA)

HSP 1 Score: 461 bits (1185), Expect = 2.370e-157
Identity = 243/409 (59.41%), Postives = 304/409 (74.33%), Query Frame = 0
Query:   57 MADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLSGGRGRGHFDNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCNKARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLAESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKTLLKNMYTMFDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAKNIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKAVAVAEIYSQAVKVGIDVELQS 465
            M ++ I IP    A TP+ A++A  +I G     DVVIKAQ L+GGRG GHF NGFK GVHMC KP +A+ +A KM+G  L+TKQTG+ G+   K       VLLMER+Y+RREMY SI+MDRASQGPVIVA P GGTSIED+A + PELI K+ +D+  G T  Q   + + L     +      +++N+Y MF   D TLVEINPLAET  G V+ACDAK+NFDDNA +R  + FA RD +QED REVEA+ +DLNYIGL GNIGC+VNGAGLAM+TMDII L GG PANFLDVGGGA E QV+KAFE+L+ D  V +ILVNIFGGIMRCDVIA G+I AAK++ L+KPI++RLQGTNVE+A +LIA+SG+KMI++++L+DAA KAV +A I SQA +  + V L+S
Sbjct:    1 MKEYGIQIPEGVPAMTPDEADKAYMKIVGNKSNADVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKTFASKMIGQTLVTKQTGDRGIKVAK-------VLLMERVYMRREMYFSILMDRASQGPVIVASPAGGTSIEDVAAATPELIFKQVIDIQTGPTKDQIDFLVEKLGCNDKSTSKMAEMIQNLYNMFIGVDATLVEINPLAETPSGDVLACDAKINFDDNAAFRHPDIFAKRDKTQEDPREVEASAFDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATEAQVKKAFEILNRDDQVKSILVNIFGGIMRCDVIAAGIIAAAKDLDLEKPIIVRLQGTNVEKARQLIADSGFKMIVADNLDDAAQKAVKIAGIVSQAQEANLRVTLES 402          
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Match: A0A0G4EP40_VITBC (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EP40_VITBC)

HSP 1 Score: 456 bits (1174), Expect = 3.680e-155
Identity = 238/428 (55.61%), Postives = 306/428 (71.50%), Query Frame = 0
Query:   35 ASGCPGQQVRRLNVHEYVSMQIMADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLSGGRGRGHF-DNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCNKARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLAESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKTLLKNMYTMFDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAKNIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKAVAVAEIYSQAVKVGIDV 461
            A G P  Q R LN+HEY S+Q+M  +++  P    A T   AE A   ++      D V+KAQVL+GGRG G+F +NGF+ GVH C  PS+ +E A+KMLG+ L+TKQTGEAG PCN        + + ER+Y+RRE Y +I+MDR+S GP+++    GGTSIED+A  +P  I+K  +D+  GL++AQA + A+ L  EG   +     +  +Y MF +KDCTLVEINP AET DGRVM CDAK+NFDDNAE+R ++ F  RD +QED REV+AA++DLNY+GL GNIGCMVNGAGLAM+TMDIIKL GG PANFLDVGGGA++ QV +AF +L +DP V  ILVNIFGGIMRCD IA GVI+A++ IGL KP+V+RL+GTN EQA +LI  SG KM+ S DL ++A KAV +AEI   A    +DV
Sbjct:   15 ARGFPALQKRWLNLHEYQSVQVMQSYHVHTPKGLPAFTGREAEAAASALQAEQGDIDFVVKAQVLAGGRGLGYFKENGFQGGVHQCQSPSKVKEIAKKMLGNTLVTKQTGEAGKPCN-------AIFVCERLYLRREKYFAILMDRSSGGPLMIGSAVGGTSIEDIAAKDPTAIVKMPIDITVGLSEAQAREFAEKLAFEGDRVDQAAQCIMGLYKMFIDKDCTLVEINPFAETHDGRVMVCDAKVNFDDNAEFRHEDIFEMRDTTQEDPREVQAARFDLNYVGLDGNIGCMVNGAGLAMATMDIIKLNGGSPANFLDVGGGASKTQVVEAFRILQNDPKVKAILVNIFGGIMRCDTIALGVIHASQEIGLSKPLVVRLEGTNQEQAKKLIDESGLKMLFSTDLSESASKAVKMAEIIELAESAELDV 435          
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Match: A0A7S3V6S0_9STRA (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6S0_9STRA)

HSP 1 Score: 455 bits (1170), Expect = 1.020e-154
Identity = 243/404 (60.15%), Postives = 306/404 (75.74%), Query Frame = 0
Query:   43 VRRLNVHEYVSMQIMADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLSGGRGRGHFDNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCNKARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLAESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKT--LLKNMYTMFDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAKNIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKA 444
            VR LNVHE+VSM++  +  I  P   +A TPE AE A K +   DE+   VIKAQVLSGGRG G F NGF+ GVHM     +A+EYA  MLG +L+TKQ  + G+ CN+       V LME+M I+ EMYLS++MDRAS GPV+V  P GGTSIED+AESNPELI K+ +D+  GL D  A  +A ++ L   + +  K   L+KN+Y MF + DCT VEINPLAE+ +G+V+ CDAK+NFDDNAE+R K+ FA RD +QED REV A+KYDLNYIGL G+IGCMVNGAGLAMSTMDII+LKG  PANFLDVGGGA EEQV KAFE+L++D +V  ILVNIFGGIM+CD+IA G++ AA+NIGLKKP+V+RL+GTNVEQ  +LIA+SG ++ +++DL+DAA KA
Sbjct:   29 VRNLNVHEHVSMELFNEKGIATPKGIVATTPEEAEAAYKSMGNPDEL---VIKAQVLSGGRGLGTFKNGFQGGVHMISSADQAKEYASSMLGQELVTKQNPK-GIVCNR-------VYLMEKMNIKTEMYLSLLMDRASGGPVMVGSPRGGTSIEDVAESNPELIFKQPIDITVGLLDEDAGAMATNIGLVEGSDQHAKAVELMKNLYGMFLDCDCTQVEINPLAESVEGQVVVCDAKVNFDDNAEFRNKDVFAKRDTTQEDPREVAASKYDLNYIGLDGSIGCMVNGAGLAMSTMDIIQLKGSSPANFLDVGGGATEEQVTKAFEILNADDNVKVILVNIFGGIMKCDIIAGGIVAAAQNIGLKKPLVVRLEGTNVEQGQKLIADSGIEVTLADDLDDAAEKA 421          
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Match: A0A5D6YJ52_9STRA (Succinate-CoA ligase subunit beta (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YJ52_9STRA)

HSP 1 Score: 448 bits (1153), Expect = 1.360e-152
Identity = 245/424 (57.78%), Postives = 306/424 (72.17%), Query Frame = 0
Query:   41 QQVRRLNVHEYVSMQIMADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLSGGRGRGHFDNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCNKARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLAESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKTLLKNMYTMFDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAKNIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKAVAVAEIYSQAVKVGIDVELQ 464
            QQVRRLN+HEY S+ IM    +  P    A TP  AE A  +IK G          +   G R                 +P +AR+ AEKMLG  L+TKQTG  G+   K       V L+ER+Y+RREMY SI+MDRASQGPVIVA P GGTSIED+A + PELI KE VD+M G+TDAQ A++A++L ++  +    + +++N+Y +F   D TLVEINPLAET +G + ACDAKLNFDDNA +R K+ FA RD SQED REVEA+ YDLNYIGL GNIGC+VNGAGLAM+TMDII L GG PANFLDVGGGA E QV+KAFE+L++D  V +ILVNIFGGIMRCDVIA G+I AA+++GLKKPIVIRLQGTNVE+A ELIA+SG+KMI+++DL+DAA KAV +A+I +QA +V ++V  +
Sbjct:    8 QQVRRLNLHEYQSLDIMKTFGVATPQGIPASTPAEAEAAFNKIKAG----------RTWGGAR-----------------RPEQARQIAEKMLGQTLVTKQTGAKGIEVAK-------VFLVERVYMRREMYFSILMDRASQGPVIVASPAGGTSIEDVAAATPELIFKENVDIMTGVTDAQVARLARNLGVDDASVPQLEAMIRNLYKLFIGVDATLVEINPLAETREGEIFACDAKLNFDDNAGFRHKDIFAQRDKSQEDPREVEASAYDLNYIGLDGNIGCLVNGAGLAMATMDIISLYGGSPANFLDVGGGATEAQVKKAFEILNADDKVKSILVNIFGGIMRCDVIAAGIIAAARDLGLKKPIVIRLQGTNVEKARELIASSGFKMIMADDLDDAAEKAVKIADIVAQAEQVKLNVAFE 397          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig100.110.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8ENP4_CAFRO1.680e-15757.80Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
A0A024GFW4_9STRA2.370e-15759.41Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
A0A0G4EP40_VITBC3.680e-15555.61Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
A0A7S3V6S0_9STRA1.020e-15460.15Succinate--CoA ligase [ADP-forming] subunit beta, ... [more]
A0A5D6YJ52_9STRA1.360e-15257.78Succinate-CoA ligase subunit beta (Fragment) n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005809Succinate--CoA synthetase, beta subunitTIGRFAMTIGR01016TIGR01016coord: 47..448
e-value: 1.7E-126
score: 420.2
IPR005809Succinate--CoA synthetase, beta subunitPIRSFPIRSF001554SucCS_betacoord: 46..450
e-value: 6.8E-139
score: 460.7
IPR005809Succinate--CoA synthetase, beta subunitPANTHERPTHR11815SUCCINYL-COA SYNTHETASE BETA CHAINcoord: 36..450
IPR005809Succinate--CoA synthetase, beta subunitHAMAPMF_00558Succ_CoA_betacoord: 46..449
score: 37.529
IPR013815ATP-grasp fold, subdomain 1GENE3D3.30.1490.20coord: 67..153
e-value: 2.7E-29
score: 102.7
IPR016102Succinyl-CoA synthetase-likeGENE3D3.40.50.261coord: 303..450
e-value: 2.2E-52
score: 178.9
IPR016102Succinyl-CoA synthetase-likeSUPERFAMILY52210Succinyl-CoA synthetase domainscoord: 303..448
IPR013650ATP-grasp fold, succinyl-CoA synthetase-typePFAMPF08442ATP-grasp_2coord: 47..265
e-value: 3.3E-61
score: 206.4
NoneNo IPR availableGENE3D3.30.470.20coord: 154..302
e-value: 9.6E-55
score: 186.4
NoneNo IPR availableSUPERFAMILY56059Glutathione synthetase ATP-binding domain-likecoord: 46..301
IPR005811ATP-citrate lyase/succinyl-CoA ligasePFAMPF00549Ligase_CoAcoord: 325..445
e-value: 1.1E-22
score: 80.5
IPR017866Succinyl-CoA synthetase, beta subunit, conserved sitePROSITEPS01217SUCCINYL_COA_LIG_3coord: 320..344

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig100contigF-serratus_M_contig100:491171..520589 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig100.110.1mRNA_F-serratus_M_contig100.110.1Fucus serratus malemRNAF-serratus_M_contig100 490732..520634 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig100.110.1 ID=prot_F-serratus_M_contig100.110.1|Name=mRNA_F-serratus_M_contig100.110.1|organism=Fucus serratus male|type=polypeptide|length=469bp
MASLRAVSCCARSLRNPRGLARTASLISGQPLASASGCPGQQVRRLNVHE
YVSMQIMADHNIDIPVSKMAETPEAAEQACKEIKGGDEMKDVVIKAQVLS
GGRGRGHFDNGFKSGVHMCLKPSEAREYAEKMLGHKLITKQTGEAGLPCN
KARDQPITVLLMERMYIRREMYLSIMMDRASQGPVIVACPDGGTSIEDLA
ESNPELILKEEVDVMEGLTDAQAAKIAKHLKLEGPAFEAGKTLLKNMYTM
FDEKDCTLVEINPLAETADGRVMACDAKLNFDDNAEWRQKETFAHRDYSQ
EDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFL
DVGGGANEEQVQKAFELLDSDPSVATILVNIFGGIMRCDVIATGVINAAK
NIGLKKPIVIRLQGTNVEQANELIANSGYKMIISEDLEDAAVKAVAVAEI
YSQAVKVGIDVELQSASA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005809Succ_CoA_synthase_bsu
IPR013815ATP_grasp_subdomain_1
IPR016102Succinyl-CoA_synth-like
IPR013650ATP-grasp_succ-CoA_synth-type
IPR005811CoA_ligase
IPR017866Succ-CoA_synthase_bsu_CS