mRNA_F-serratus_M_contig998.21261.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig998.21261.1
Unique NamemRNA_F-serratus_M_contig998.21261.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.340e-20
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTF+V Y+PTE
Sbjct:  210 DVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTE 299
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BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5J6W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.420e-20
Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DV+GL ET+R+G   I+  GY + +SG  +G KE++G HG+GIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   72 DVVGLHETRREGQGSIAHDGYVIIWSGARAGTKEKRGVHGMGIAIKEVMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 161
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BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.420e-20
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSP 261
            DVIGLQET+R+G   I+  GY V +SG  +G K+++G HGVGIAIKE +   AGE+  T+ECIS RL+K R+ I ++  VTFVV Y+P
Sbjct:  158 DVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAP 245
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BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.460e-20
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTEEA 273
            DVIGLQET+R G   I+  GY + +SG  +G K+++G HGVGIAIKE +    GE   T+ECIS RL+K R+ I ++  VTFVV Y+PTE A
Sbjct:   13 DVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETA 104
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.470e-20
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTEEA 273
            DVIGLQET+R G   I+  GY + +SG  +G K+++G HGVGIAIKE +    GE   T+ECIS RL+K R+ I ++  VTFVV Y+PTE A
Sbjct:  125 DVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETA 216
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3Q1_9PHAE2.340e-2052.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J6W7_9PHAE2.420e-2051.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDU4_9PHAE2.420e-2054.55Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KC90_9PHAE2.460e-2053.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE2.470e-2053.26Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig998contigF-serratus_M_contig998:290575..290862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932797.7805479-CDS-F-serratus_M_contig998:290574..2908621622932797.7805479-CDS-F-serratus_M_contig998:290574..290862Fucus serratus maleCDSF-serratus_M_contig998 290575..290862 +
1690964479.618437-CDS-F-serratus_M_contig998:290574..2908621690964479.618437-CDS-F-serratus_M_contig998:290574..290862Fucus serratus maleCDSF-serratus_M_contig998 290575..290862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig998.21261.1prot_F-serratus_M_contig998.21261.1Fucus serratus malepolypeptideF-serratus_M_contig998 290575..290862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig998.21261.1

>prot_F-serratus_M_contig998.21261.1 ID=prot_F-serratus_M_contig998.21261.1|Name=mRNA_F-serratus_M_contig998.21261.1|organism=Fucus serratus male|type=polypeptide|length=96bp
DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIV
KKAGEDDITIECISARLLKARISIKSNFVTFVVAYSPTEEASEGQK
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mRNA from alignment at F-serratus_M_contig998:290575..290862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig998.21261.1 ID=mRNA_F-serratus_M_contig998.21261.1|Name=mRNA_F-serratus_M_contig998.21261.1|organism=Fucus serratus male|type=mRNA|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig998:290575..290862+ (Fucus serratus male)
GACGTCATCGGATTGCAGGAGACCAAAAGGGACGGAACGTCGGAAATTTC
TGAATCTGGATACCGCGTCTTTTTTAGTGGCGACTGCAGCGGGATAAAAG
AAAGAAAGGGACAACATGGGGTTGGAATTGCGATAAAGGAGGAGATCGTT
AAAAAGGCTGGCGAGGACGACATCACAATCGAGTGCATCAGCGCACGTCT
CCTGAAGGCCCGAATCTCGATTAAATCAAACTTCGTTACGTTCGTCGTAG
CCTATTCCCCGACCGAGGAAGCGTCGGAGGGGCAGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig998:290575..290862+

>mRNA_F-serratus_M_contig998.21261.1 ID=mRNA_F-serratus_M_contig998.21261.1|Name=mRNA_F-serratus_M_contig998.21261.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig998:290575..290862+ (Fucus serratus male)
GACGTCATCGGATTGCAGGAGACCAAAAGGGACGGAACGTCGGAAATTTC
TGAATCTGGATACCGCGTCTTTTTTAGTGGCGACTGCAGCGGGATAAAAG
AAAGAAAGGGACAACATGGGGTTGGAATTGCGATAAAGGAGGAGATCGTT
AAAAAGGCTGGCGAGGACGACATCACAATCGAGTGCATCAGCGCACGTCT
CCTGAAGGCCCGAATCTCGATTAAATCAAACTTCGTTACGTTCGTCGTAG
CCTATTCCCCGACCGAGGAAGCGTCGGAGGGGCAGAAGGACGTCATCGGA
TTGCAGGAGACCAAAAGGGACGGAACGTCGGAAATTTCTGAATCTGGATA
CCGCGTCTTTTTTAGTGGCGACTGCAGCGGGATAAAAGAAAGAAAGGGAC
AACATGGGGTTGGAATTGCGATAAAGGAGGAGATCGTTAAAAAGGCTGGC
GAGGACGACATCACAATCGAGTGCATCAGCGCACGTCTCCTGAAGGCCCG
AATCTCGATTAAATCAAACTTCGTTACGTTCGTCGTAGCCTATTCCCCGA
CCGAGGAAGCGTCGGAGGGGCAGAAG
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