mRNA_F-serratus_M_contig998.21261.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig998.21261.1
Unique Name	mRNA_F-serratus_M_contig998.21261.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.320e-21
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1

Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVI LQET+R+G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+KAR+ I ++  VTFVV Y+PTE
Sbjct:   13 DVIELQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTE 102

[Close]

BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.880e-21
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 1

Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DV+GLQE +RDG   I   GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   60 DVVGLQENRRDGQGSIPHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 149

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BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5KEC1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 7.080e-21
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 1

Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            D+IGLQET+R+G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   13 DMIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESGGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102

[Close]

BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5L2M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.600e-21
Identity = 48/90 (53.33%), Postives = 65/90 (72.22%), Query Frame = 1

Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:  142 DVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 231

[Close]

BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 9.360e-21
Identity = 48/90 (53.33%), Postives = 65/90 (72.22%), Query Frame = 1

Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:  121 DVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 210

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BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5L4L0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.120e-20
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 1

Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTEEA 273
            DVIGLQET+R+G   I+  G  + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE A
Sbjct:   13 DVIGLQETRREGQGSIAHDGDVIIWSGALAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETA 104

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BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5KZD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.150e-20
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 1

Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISIKSN-FVTFVVAYSPTE 267
            DVIGLQET+R G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I     VTFVV Y+PTE
Sbjct:   13 DVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRMQIGHTCVVTFVVGYAPTE 102

[Close]

BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5L4K2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.210e-20
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 1

Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   I+  G+ + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   10 DVIGLQETRREGQGSIAHDGHVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 99

[Close]

BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.260e-20
Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 1

Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   ++  GY + +SG  +G K+++G HGVGIAIKE + +  GE   T+ECI+ RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   13 DVIGLQETRREGQGSLAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTE 102

[Close]

BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5KMR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.490e-20
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 1

Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R G   I+  GY + +SG  +G K+++G HGVGIAIKE + ++ G++  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   13 DVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWERVGQEGRTVECISPRLMKLRLQIGRTCGVTFVVGYAPTE 102

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JUT2_9PHAE	4.320e-21	53.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6P8_9PHAE	6.880e-21	52.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEC1_9PHAE	7.080e-21	52.22	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5L2M5_9PHAE	8.600e-21	53.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMB4_9PHAE	9.360e-21	53.33	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L4L0_9PHAE	1.120e-20	52.17	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KZD3_9PHAE	1.150e-20	53.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L4K2_9PHAE	1.210e-20	52.22	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5K259_9PHAE	1.260e-20	51.11	Endo/exonuclease/phosphatase domain-containing pro...	[more]
A0A6H5KMR2_9PHAE	1.490e-20	52.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig998	contig	F-serratus_M_contig998:290575..290862 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	288
Cds size	288
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932797.7805479-CDS-F-serratus_M_contig998:290574..290862	1622932797.7805479-CDS-F-serratus_M_contig998:290574..290862	Fucus serratus male	CDS	F-serratus_M_contig998 290575..290862 +
1690964479.618437-CDS-F-serratus_M_contig998:290574..290862	1690964479.618437-CDS-F-serratus_M_contig998:290574..290862	Fucus serratus male	CDS	F-serratus_M_contig998 290575..290862 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig998.21261.1	prot_F-serratus_M_contig998.21261.1	Fucus serratus male	polypeptide	F-serratus_M_contig998 290575..290862 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig998:290575..290862+
coding sequence from alignment at F-serratus_M_contig998:290575..290862+

protein sequence of mRNA_F-serratus_M_contig998.21261.1

>prot_F-serratus_M_contig998.21261.1 ID=prot_F-serratus_M_contig998.21261.1|Name=mRNA_F-serratus_M_contig998.21261.1|organism=Fucus serratus male|type=polypeptide|length=96bp
DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIV
KKAGEDDITIECISARLLKARISIKSNFVTFVVAYSPTEEASEGQK

mRNA from alignment at F-serratus_M_contig998:290575..290862+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig998.21261.1 ID=mRNA_F-serratus_M_contig998.21261.1|Name=mRNA_F-serratus_M_contig998.21261.1|organism=Fucus serratus male|type=mRNA|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig998:290575..290862+ (Fucus serratus male)
GACGTCATCGGATTGCAGGAGACCAAAAGGGACGGAACGTCGGAAATTTC
TGAATCTGGATACCGCGTCTTTTTTAGTGGCGACTGCAGCGGGATAAAAG
AAAGAAAGGGACAACATGGGGTTGGAATTGCGATAAAGGAGGAGATCGTT
AAAAAGGCTGGCGAGGACGACATCACAATCGAGTGCATCAGCGCACGTCT
CCTGAAGGCCCGAATCTCGATTAAATCAAACTTCGTTACGTTCGTCGTAG
CCTATTCCCCGACCGAGGAAGCGTCGGAGGGGCAGAAG

Coding sequence (CDS) from alignment at F-serratus_M_contig998:290575..290862+

>mRNA_F-serratus_M_contig998.21261.1 ID=mRNA_F-serratus_M_contig998.21261.1|Name=mRNA_F-serratus_M_contig998.21261.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig998:290575..290862+ (Fucus serratus male)
GACGTCATCGGATTGCAGGAGACCAAAAGGGACGGAACGTCGGAAATTTC
TGAATCTGGATACCGCGTCTTTTTTAGTGGCGACTGCAGCGGGATAAAAG
AAAGAAAGGGACAACATGGGGTTGGAATTGCGATAAAGGAGGAGATCGTT
AAAAAGGCTGGCGAGGACGACATCACAATCGAGTGCATCAGCGCACGTCT
CCTGAAGGCCCGAATCTCGATTAAATCAAACTTCGTTACGTTCGTCGTAG
CCTATTCCCCGACCGAGGAAGCGTCGGAGGGGCAGAAGGACGTCATCGGA
TTGCAGGAGACCAAAAGGGACGGAACGTCGGAAATTTCTGAATCTGGATA
CCGCGTCTTTTTTAGTGGCGACTGCAGCGGGATAAAAGAAAGAAAGGGAC
AACATGGGGTTGGAATTGCGATAAAGGAGGAGATCGTTAAAAAGGCTGGC
GAGGACGACATCACAATCGAGTGCATCAGCGCACGTCTCCTGAAGGCCCG
AATCTCGATTAAATCAAACTTCGTTACGTTCGTCGTAGCCTATTCCCCGA
CCGAGGAAGCGTCGGAGGGGCAGAAG