mRNA_F-serratus_M_contig998.21261.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig998.21261.1
Unique NamemRNA_F-serratus_M_contig998.21261.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.570e-22
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   I+  GY + +SG  +G K+++G HGVGIAIKE I +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   44 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 133
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.580e-22
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.020e-21
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   I+  GY + +SG  +G K+++G HGVG AIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.090e-21
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTEEA 273
            DVIGLQET+R G   I+  GY + +SG  +G K+++G HGVGIAIKE +    GE   T+ECIS RL+K R+ I ++  VTFVV Y+PTE A
Sbjct:   13 DVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETA 104
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5KTK0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.950e-21
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.130e-21
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5JUC3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.750e-21
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:  142 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 231
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.750e-21
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   94 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 183
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.750e-21
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:   13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 102
[Close]
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.790e-21
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIVKKAGEDDITIECISARLLKARISI-KSNFVTFVVAYSPTE 267
            DVIGLQET+R+G   I+  GY + +SG  +G K+++G HGVGIAIKE + +  GE+  T+ECIS RL+K R+ I ++  VTFVV Y+PTE
Sbjct:  692 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTE 781
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig998.21261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE1.570e-2254.44Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KBZ6_9PHAE7.580e-2253.33Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JMM5_9PHAE1.020e-2152.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KP87_9PHAE1.090e-2153.26Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KTK0_9PHAE1.950e-2153.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JM04_9PHAE2.130e-2153.33Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JUC3_9PHAE2.750e-2153.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGX2_9PHAE2.750e-2153.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7A7_9PHAE2.750e-2153.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE3.790e-2153.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig998contigF-serratus_M_contig998:290575..290862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932797.7805479-CDS-F-serratus_M_contig998:290574..2908621622932797.7805479-CDS-F-serratus_M_contig998:290574..290862Fucus serratus maleCDSF-serratus_M_contig998 290575..290862 +
1690964479.618437-CDS-F-serratus_M_contig998:290574..2908621690964479.618437-CDS-F-serratus_M_contig998:290574..290862Fucus serratus maleCDSF-serratus_M_contig998 290575..290862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig998.21261.1prot_F-serratus_M_contig998.21261.1Fucus serratus malepolypeptideF-serratus_M_contig998 290575..290862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig998.21261.1

>prot_F-serratus_M_contig998.21261.1 ID=prot_F-serratus_M_contig998.21261.1|Name=mRNA_F-serratus_M_contig998.21261.1|organism=Fucus serratus male|type=polypeptide|length=96bp
DVIGLQETKRDGTSEISESGYRVFFSGDCSGIKERKGQHGVGIAIKEEIV
KKAGEDDITIECISARLLKARISIKSNFVTFVVAYSPTEEASEGQK
back to top

mRNA from alignment at F-serratus_M_contig998:290575..290862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig998.21261.1 ID=mRNA_F-serratus_M_contig998.21261.1|Name=mRNA_F-serratus_M_contig998.21261.1|organism=Fucus serratus male|type=mRNA|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig998:290575..290862+ (Fucus serratus male)
GACGTCATCGGATTGCAGGAGACCAAAAGGGACGGAACGTCGGAAATTTC
TGAATCTGGATACCGCGTCTTTTTTAGTGGCGACTGCAGCGGGATAAAAG
AAAGAAAGGGACAACATGGGGTTGGAATTGCGATAAAGGAGGAGATCGTT
AAAAAGGCTGGCGAGGACGACATCACAATCGAGTGCATCAGCGCACGTCT
CCTGAAGGCCCGAATCTCGATTAAATCAAACTTCGTTACGTTCGTCGTAG
CCTATTCCCCGACCGAGGAAGCGTCGGAGGGGCAGAAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig998:290575..290862+

>mRNA_F-serratus_M_contig998.21261.1 ID=mRNA_F-serratus_M_contig998.21261.1|Name=mRNA_F-serratus_M_contig998.21261.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig998:290575..290862+ (Fucus serratus male)
GACGTCATCGGATTGCAGGAGACCAAAAGGGACGGAACGTCGGAAATTTC
TGAATCTGGATACCGCGTCTTTTTTAGTGGCGACTGCAGCGGGATAAAAG
AAAGAAAGGGACAACATGGGGTTGGAATTGCGATAAAGGAGGAGATCGTT
AAAAAGGCTGGCGAGGACGACATCACAATCGAGTGCATCAGCGCACGTCT
CCTGAAGGCCCGAATCTCGATTAAATCAAACTTCGTTACGTTCGTCGTAG
CCTATTCCCCGACCGAGGAAGCGTCGGAGGGGCAGAAGGACGTCATCGGA
TTGCAGGAGACCAAAAGGGACGGAACGTCGGAAATTTCTGAATCTGGATA
CCGCGTCTTTTTTAGTGGCGACTGCAGCGGGATAAAAGAAAGAAAGGGAC
AACATGGGGTTGGAATTGCGATAAAGGAGGAGATCGTTAAAAAGGCTGGC
GAGGACGACATCACAATCGAGTGCATCAGCGCACGTCTCCTGAAGGCCCG
AATCTCGATTAAATCAAACTTCGTTACGTTCGTCGTAGCCTATTCCCCGA
CCGAGGAAGCGTCGGAGGGGCAGAAG
back to top