mRNA_F-serratus_M_contig998.21259.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig998.21259.1
Unique NamemRNA_F-serratus_M_contig998.21259.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig998.21259.1 vs. uniprot
Match: A0A0K6FPQ1_9AGAM (ULP_PROTEASE domain-containing protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FPQ1_9AGAM)

HSP 1 Score: 108 bits (270), Expect = 1.840e-21
Identity = 65/197 (32.99%), Postives = 103/197 (52.28%), Query Frame = 2 
Query:   23 WLGDDVINLWIELCRSRDEELCGKGTGRRHSC-FLDTFFFVKLRNNRWSHEALKKWTTKMDLAGARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDFLEDDDDWKEGNMSSFEPNDWEIVQDSGPTPEQKNGKDCGVFTCQFIAFLNENIGENFDFKQEQEDMVHMRWRMMYSILYGEI 610
            WL D+VIN +  L  +R EE   KG G+     + +TFFF KL    +    + KWT K+D+     V IP+N  +G    HW+    + +KKR+ ++DS   +   I + + D+L  +   K+     F+   WE   D    P+Q+NG DCGVF+CQ++  L+  +   F     QE+M ++R RM+  I  G++
Sbjct:  348 WLNDEVINFYGALILARSEE-AQKGKGKALDVHYFNTFFFAKLEEMGYEKSRIGKWTKKIDIFKKDVVLIPVN--LGNA--HWTCAAINFQKKRIEYHDSMGRKRGKIYKILRDYLSSEH--KDKKKKDFDFTGWEDHFDEN-APQQENGYDCGVFSCQYMECLSRGVPFGFS----QENMSYLRQRMILEITRGKL 532
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BLAST of mRNA_F-serratus_M_contig998.21259.1 vs. uniprot
Match: A0A8H3EBN4_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3EBN4_9AGAM)

HSP 1 Score: 108 bits (269), Expect = 2.510e-21
Identity = 65/197 (32.99%), Postives = 105/197 (53.30%), Query Frame = 2 
Query:   23 WLGDDVINLWIELCRSRDEELCGKGTGRRHSC-FLDTFFFVKLRNNRWSHEALKKWTTKMDLAGARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDFLEDDDDWKEGNMSSFEPNDWEIVQDSGPTPEQKNGKDCGVFTCQFIAFLNENIGENFDFKQEQEDMVHMRWRMMYSILYGEI 610
            WL D+VIN +  L  +R EE   KG G+     + +TFFF KL +  +    + KWT K+D+     V IP+N  +G    HW+    + +KKR+ ++DS   +   I + + D+L  + + K+     F+   WE   D    P+Q+NG DCGVF+CQ++  L+      FD    Q +M ++R RM+  I+ G++
Sbjct:  352 WLNDEVINFYGALILARSEE-AQKGKGKALDAHYFNTFFFAKLEDMGYEKSRIGKWTKKIDIFKKDIVLIPVN--LGNA--HWTCAAINFQKKRIEYHDSMGRKRGKIYKILRDYL--NSEHKDKKKKDFDFAGWEDYFDDN-APQQENGYDCGVFSCQYMECLSRGAPFGFD----QGNMGYLRQRMILEIMRGKL 536
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BLAST of mRNA_F-serratus_M_contig998.21259.1 vs. uniprot
Match: A0A8H2XG59_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H2XG59_9AGAM)

HSP 1 Score: 108 bits (269), Expect = 2.640e-21
Identity = 67/197 (34.01%), Postives = 108/197 (54.82%), Query Frame = 2 
Query:   23 WLGDDVINLWIELCRSRDEELCGKGTGRR-HSCFLDTFFFVKLRNNRWSHEALKKWTTKMDLAGARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDFLEDDDDWKEGNMSSFEPNDWEIVQDSGPTPEQKNGKDCGVFTCQFIAFLNENIGENFDFKQEQEDMVHMRWRMMYSILYGEI 610
            WL D+VIN +  L  +R EE   KG G+   + + +TFFF KL +  +    + KWT K+D+     V IP+N  +G    HW+    + +KKR+ ++DS   +   I + + D+L  + + K+     F+   WE   D    P+Q+NG DCGVF+CQ++  L+   G  F F QE  +M ++R RM+  I+ G++
Sbjct:  362 WLNDEVINFYGALILARSEE-AQKGRGKALDTHYFNTFFFAKLEDLGYEKSRIGKWTKKIDIFKKDVVLIPVN--LGNA--HWTCAAINFQKKRIEYHDSMGRKRGKIYKILRDYL--NKEHKDKKKKDFDFTGWEDYFDDD-APQQENGYDCGVFSCQYMECLSR--GAPFAFGQE--NMSYLRQRMILEIMRGKL 546
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BLAST of mRNA_F-serratus_M_contig998.21259.1 vs. uniprot
Match: A0A8H5CAB4_9AGAR (ULP_PROTEASE domain-containing protein n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5CAB4_9AGAR)

HSP 1 Score: 108 bits (270), Expect = 3.060e-21
Identity = 68/201 (33.83%), Postives = 103/201 (51.24%), Query Frame = 2 
Query:   23 WLGDDVINLWIELCRSRDEELCGKGTGRRH---SCFLDTFFFVKLRNNRWSHEALKKWTTKMDLAGARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDFLEDDDDWKEGNMSSFEPNDWEIVQDSGP--TPEQKNGKDCGVFTCQFIAFLNENIGENFDFKQEQEDMVHMRWRMMYSILYGEI 610
            WL D++IN +  +  +R EE       R     + +L +FF+ KL  + +    L KWT K+D+     V IP+NH       HW+    + +KKR   YDS    T  + +R+ D++       E      +P D+   +D  P  TP+Q NG DCGVFTCQF+  L+   GE+ DF   QEDM ++R RM++ I +  +
Sbjct:  506 WLNDEIINFYGAMIMARAEEQKENAVPRGKILKAFYLSSFFWQKLSTDGYEKGRLAKWTKKVDIFSRDVVLIPVNHG----NAHWTAAAINFQKKRFESYDSMGMATEAVWKRLRDYVR-----AEHLNKKKKPFDFTGWKDWAPDSTPQQDNGYDCGVFTCQFLESLSR--GED-DFVFTQEDMPYLRRRMVWEIAHTRL 694
[Close]
BLAST of mRNA_F-serratus_M_contig998.21259.1 vs. uniprot
Match: A0A5N5QS95_9AGAM (Ulp1 peptidase n=1 Tax=Ceratobasidium theobromae TaxID=1582974 RepID=A0A5N5QS95_9AGAM)

HSP 1 Score: 107 bits (267), Expect = 4.420e-21
Identity = 65/197 (32.99%), Postives = 106/197 (53.81%), Query Frame = 2 
Query:   23 WLGDDVINLWIELCRSRDEELCGKGTGRRHSC-FLDTFFFVKLRNNRWSHEALKKWTTKMDLAGARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDFLEDDDDWKEGNMSSFEPNDWEIVQDSGPTPEQKNGKDCGVFTCQFIAFLNENIGENFDFKQEQEDMVHMRWRMMYSILYGEI 610
            WL D+VIN +  L  +R EE   KG  +     + +TFFF KL +  +    + KWT K+D+     V IP+N  +G    HW+    +  KKR+ ++DS   +   + + + D+L  +   K+     F+   WE   D    P+Q+NG DCGVF+CQ++  L+   G +FDF  +Q +M ++R RM+  I+ G++
Sbjct:  351 WLNDEVINFYGALILARSEE-AQKGKSKALDVHYFNTFFFAKLEDLGYEKARIGKWTKKIDIFKKDVVLIPVN--LGNA--HWTCAAINFRKKRIEYHDSMGRKRGKVYKYLRDYLSKEH--KDKKKKDFDFTGWEDYFDDN-APQQENGYDCGVFSCQYMECLSR--GADFDF--DQTNMPYLRQRMILEIVRGKL 535
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig998.21259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K6FPQ1_9AGAM1.840e-2132.99ULP_PROTEASE domain-containing protein n=2 Tax=Rhi... [more]
A0A8H3EBN4_9AGAM2.510e-2132.99Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A8H2XG59_9AGAM2.640e-2134.01Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A8H5CAB4_9AGAR3.060e-2133.83ULP_PROTEASE domain-containing protein n=1 Tax=Tul... [more]
A0A5N5QS95_9AGAM4.420e-2132.99Ulp1 peptidase n=1 Tax=Ceratobasidium theobromae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig998contigF-serratus_M_contig998:238471..240709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue9.3e-18
Seed eggNOG ortholog2880.D8LMK6
KEGG koko:K08592
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0778@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons5
Model size1583
Cds size420
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932797.589778-UTR-F-serratus_M_contig998:238470..2394371622932797.589778-UTR-F-serratus_M_contig998:238470..239437Fucus serratus maleUTRF-serratus_M_contig998 238471..239437 -
1690964479.5276735-UTR-F-serratus_M_contig998:238470..2394371690964479.5276735-UTR-F-serratus_M_contig998:238470..239437Fucus serratus maleUTRF-serratus_M_contig998 238471..239437 -
1622932797.6791961-UTR-F-serratus_M_contig998:240200..2402011622932797.6791961-UTR-F-serratus_M_contig998:240200..240201Fucus serratus maleUTRF-serratus_M_contig998 240201..240201 -
1690964479.5757134-UTR-F-serratus_M_contig998:240200..2402011690964479.5757134-UTR-F-serratus_M_contig998:240200..240201Fucus serratus maleUTRF-serratus_M_contig998 240201..240201 -
1622932797.6973066-UTR-F-serratus_M_contig998:240352..2404681622932797.6973066-UTR-F-serratus_M_contig998:240352..240468Fucus serratus maleUTRF-serratus_M_contig998 240353..240468 -
1690964479.589392-UTR-F-serratus_M_contig998:240352..2404681690964479.589392-UTR-F-serratus_M_contig998:240352..240468Fucus serratus maleUTRF-serratus_M_contig998 240353..240468 -
1622932797.7180538-UTR-F-serratus_M_contig998:240630..2407091622932797.7180538-UTR-F-serratus_M_contig998:240630..240709Fucus serratus maleUTRF-serratus_M_contig998 240631..240709 -
1690964479.6044219-UTR-F-serratus_M_contig998:240630..2407091690964479.6044219-UTR-F-serratus_M_contig998:240630..240709Fucus serratus maleUTRF-serratus_M_contig998 240631..240709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932797.6061292-CDS-F-serratus_M_contig998:239437..2395931622932797.6061292-CDS-F-serratus_M_contig998:239437..239593Fucus serratus maleCDSF-serratus_M_contig998 239438..239593 -
1690964479.539677-CDS-F-serratus_M_contig998:239437..2395931690964479.539677-CDS-F-serratus_M_contig998:239437..239593Fucus serratus maleCDSF-serratus_M_contig998 239438..239593 -
1622932797.645885-CDS-F-serratus_M_contig998:239758..2399201622932797.645885-CDS-F-serratus_M_contig998:239758..239920Fucus serratus maleCDSF-serratus_M_contig998 239759..239920 -
1690964479.5480003-CDS-F-serratus_M_contig998:239758..2399201690964479.5480003-CDS-F-serratus_M_contig998:239758..239920Fucus serratus maleCDSF-serratus_M_contig998 239759..239920 -
1622932797.6638153-CDS-F-serratus_M_contig998:240098..2402001622932797.6638153-CDS-F-serratus_M_contig998:240098..240200Fucus serratus maleCDSF-serratus_M_contig998 240099..240200 -
1690964479.563953-CDS-F-serratus_M_contig998:240098..2402001690964479.563953-CDS-F-serratus_M_contig998:240098..240200Fucus serratus maleCDSF-serratus_M_contig998 240099..240200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig998.21259.1prot_F-serratus_M_contig998.21259.1Fucus serratus malepolypeptideF-serratus_M_contig998 239438..240200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig998.21259.1

>prot_F-serratus_M_contig998.21259.1 ID=prot_F-serratus_M_contig998.21259.1|Name=mRNA_F-serratus_M_contig998.21259.1|organism=Fucus serratus male|type=polypeptide|length=140bp
MDLAGARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQ
ERILDFLEDDDDWKEGNMSSFEPNDWEIVQDSGPTPEQKNGKDCGVFTCQ
FIAFLNENIGENFDFKQEQEDMVHMRWRMMYSILYGEIV*
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mRNA from alignment at F-serratus_M_contig998:238471..240709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig998.21259.1 ID=mRNA_F-serratus_M_contig998.21259.1|Name=mRNA_F-serratus_M_contig998.21259.1|organism=Fucus serratus male|type=mRNA|length=2239bp|location=Sequence derived from alignment at F-serratus_M_contig998:238471..240709- (Fucus serratus male)
GGACCCCAATCATTGTACTGGGTGGCTGGGGGACGACGTCATTAACCTCT
GGATCGAGCTATGCCGGAGTCGGGATGAGGTGGGTCGTCGTAAAAAAACG
AAAAACTTGGGGGTATTCGTGTGTAGAAAACCTTCTAGCGTAGCATCGAG
ATGGATAGTTTACGGAGGTCTGCACTTTTATGGAATAATCGTTTTTATTT
TGTTTAATATGATACTTCGTCCCTTATAACATTTGTCGCAGGAACTATGC
GGAAAGGGCACAGGGCGCAGACACTCATGCTTCCTGGATACATTCTTCTT
CGTAAAGCTAAGAAATAACCGCTGGAGCCACGAAGCCCTCAAGAAATGGA
CAACCAAGTAAAGAAGATGCTGGGGTCCAATATTGAACAATTGAAAAAAT
TTCGGGGTTTTTCTGAGGTTGTGCCACAGAAGACGTGCAAGTGTGTTGTC
TGCGAGGCAAGTGCTAAAACTATCACTTGCGACTATTTTGCGTCTCGTTC
ATTTACAGGATGGATCTAGCTGGAGCCCGAAAAGTGTATATACCTATCAA
CCATGAGGTGGGAGGCCGCGGTTTACACTGGAGCCTGTGTGTCGCCGATA
TGGAGAAGAAGGTGACCATCCAGAGGGTGTGCGTGATGGTATAGGCATCA
TTTATTTGTTGATAAAAAAAAACACGTCCAATTCGATGAAATGTGACATT
GATATCATGAGCACTTCATGTCTGCATCATAAACATGTACTCCACATGTT
CGTCTAACTCGACTAACTCGGAAATGTTCCCATGATCAGCGCGTCATCCA
CTACGACTCCTTCAAAAATCGGACAACGACGATTCAGGAGAGAATCCTCG
ACTTCCTCGAGGATGACGACGACTGGAAGGAGGGGAATATGAGTTCGTTC
GAGCCGAACGATTGGGAAATCGTGCAAGATAGTGGACCTACTCCGGAACA
GGTGTACTTCTTGGACTGTGTTTCCATTATGGCTATCTGCAACCATGATA
ATGGTTATGAAATTAGGGTTGCCTCTATATAAAAGTGCACTGCTATATCA
TCGTTCATACATGCAAGTACTGATCAACGACCCGATGCGACGCGTTGGAC
TGGCTGTTCTATGCAGAAAAATGGCAAAGACTGTGGGGTCTTCACCTGCC
AATTCATCGCCTTCCTCAACGAGAATATTGGCGAAAACTTCGATTTCAAA
CAGGAACAGGAGGATATGGTTCACATGCGGTGGAGGATGATGTATTCAAT
CTTATACGGTGAAATAGTTTAGATTGTAGTTATAACTGGGCCGAAGATAA
ATTAAAGCCCTTCGACTACACACATCCCTTCGGGTTTCGTGTGGTCGTAC
CTTCTAAGTATTAGGATCGCGAATGACGGGGGACGCAACCCGCGTGGACC
GCTCGTGACAAAACAACCTCGTACATCACCAACATAAAAAGTTGGATTAT
ATTTCAGAACAGCCCGTGAGGGCAATTTTTATAGTTCGTGAAGTAGGTGG
TGAATAGGTCCCGATTGTCACGGCTGTTGACGGTCAGGTGTTTTTTTCCA
GGCGATGTTGCCTGTAGGGTACAGTTGCCCAAGACAGAATCTTGAGATAT
TACATAACGGCGAGTTTATTTACGAATGTTTCACCTTCGGAGTGACATGG
CCATTACTAGAGCTCACGAAAGACTAACTGCATGTTGAGGGCATGAACGT
GGATTTATTCCTTCGCGGCAATTAGTCACAACCGTTCTAGTGTTTTTTCC
AGGCGATGTTGCCTGTAGGGTACAGTTGCCCAAGACAGAATCTTGAGATA
TTACATAAGGGCGAGTTTATTTACGAATGTTTCACCTTTGGAGTGACATG
GCCATTATTAGAGCTCACGAAAGACTAACTGCATGTTGAGGGCATGAATG
TGGATTTATTCCTTCGCGGCAATTAGTCACAACCGTTCTATTTTGAAGAC
GAGGGATACTGGTAAAGGAAGAGAAACGGTGGAAAGGCTACGGATGGCTA
AGTTGCAGCTTTCTATACCTTTCACGAAATGCGTTTCTTTCATGACTACT
CGGGGTAAACTAATGGTGTAAATTAAGAGGTTCCATGTCTTGATTTCACG
TGCGGTAGCATGTGTCACGAAATTGGTGTTATTTCCTCTATTGCACATCA
ACAACTTGCGCTAAGGTAGAGGAGGTGACTAGATAGAACAGTGCGCTATA
GTACCGGCGTGGTGCTGCGGGGAGCATTGGAATAAGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig998:238471..240709-

>mRNA_F-serratus_M_contig998.21259.1 ID=mRNA_F-serratus_M_contig998.21259.1|Name=mRNA_F-serratus_M_contig998.21259.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig998:238471..240709- (Fucus serratus male)
ATGGATCTAGCTGGAGCCCGAAAAGTGTATATACCTATCAACCATGAGGT
GGGAGGCCGCGGTTTACACTGGAGCCTGTGTGTCGCCGATATGGAGAAGA
AGATGGATCTAGCTGGAGCCCGAAAAGTGTATATACCTATCAACCATGAG
GTGGGAGGCCGCGGTTTACACTGGAGCCTGTGTGTCGCCGATATGGAGAA
GAAGCGCGTCATCCACTACGACTCCTTCAAAAATCGGACAACGACGATTC
AGGAGAGAATCCTCGACTTCCTCGAGGATGACGACGACTGGAAGGAGGGG
AATATGAGTTCGTTCGAGCCGAACGATTGGGAAATCGTGCAAGATAGTGG
ACCTACTCCGGAACAGCGCGTCATCCACTACGACTCCTTCAAAAATCGGA
CAACGACGATTCAGGAGAGAATCCTCGACTTCCTCGAGGATGACGACGAC
TGGAAGGAGGGGAATATGAGTTCGTTCGAGCCGAACGATTGGGAAATCGT
GCAAGATAGTGGACCTACTCCGGAACAGAAAAATGGCAAAGACTGTGGGG
TCTTCACCTGCCAATTCATCGCCTTCCTCAACGAGAATATTGGCGAAAAC
TTCGATTTCAAACAGGAACAGGAGGATATGGTTCACATGCGGTGGAGGAT
GATGTATTCAATCTTATACGGTGAAATAGTTTAGAAAAATGGCAAAGACT
GTGGGGTCTTCACCTGCCAATTCATCGCCTTCCTCAACGAGAATATTGGC
GAAAACTTCGATTTCAAACAGGAACAGGAGGATATGGTTCACATGCGGTG
GAGGATGATGTATTCAATCTTATACGGTGAAATAGTTTAG
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