mRNA_F-serratus_M_contig998.21256.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig998.21256.1
Unique NamemRNA_F-serratus_M_contig998.21256.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig998.21256.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.050e-13
Identity = 62/142 (43.66%), Postives = 69/142 (48.59%), Query Frame = -2 
Query:  144 SRRPIHAALVTGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRTVDGIGGHSQGPPHGSHHLRPGHPPGMGKHGHGS-RFGRNIGXXXXXXXXXXXS-------------GRHLHLSGSDSEG------EYGRPMHGP 509
            S+ P+HAALV  GI LRPRET+ LLRAL V PHR V+LGLV  + LR     GG   GP H    LR GHP G G   H   R GR +G                         G HLH SG   E       E GRP+HGP
Sbjct:  139 SKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELRRSR-PGGRRGGPSH----LRHGHPGGPGGRXHXXXRGGRGMGRPRGPPPYGPPPHRHVHGHGKRRAHGDHLHSSGPVHEPPPGPFHESGRPLHGP 275
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BLAST of mRNA_F-serratus_M_contig998.21256.1 vs. uniprot
Match: A0A6H5L2C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.970e-7
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = -2 
Query:  369 SRRPIHAALVTGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALR 509
            S+ PIHA  V  G++LRPRET+ LLRAL V PHR V+LGLV  +  R
Sbjct:  100 SKHPIHAVFVAAGVQLRPRETRPLLRALGVGPHRLVKLGLVQREEAR 146
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig998.21256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVV7_9PHAE1.050e-1343.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C8_9PHAE1.970e-759.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig998contigF-serratus_M_contig998:145698..146264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.664708-UTR-F-serratus_M_contig998:145697..1459461622932794.664708-UTR-F-serratus_M_contig998:145697..145946Fucus serratus maleUTRF-serratus_M_contig998 145698..145946 +
1690964479.0410838-UTR-F-serratus_M_contig998:145697..1459461690964479.0410838-UTR-F-serratus_M_contig998:145697..145946Fucus serratus maleUTRF-serratus_M_contig998 145698..145946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.6825318-CDS-F-serratus_M_contig998:145946..1462641622932794.6825318-CDS-F-serratus_M_contig998:145946..146264Fucus serratus maleCDSF-serratus_M_contig998 145947..146264 +
1690964479.0557764-CDS-F-serratus_M_contig998:145946..1462641690964479.0557764-CDS-F-serratus_M_contig998:145946..146264Fucus serratus maleCDSF-serratus_M_contig998 145947..146264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig998.21256.1prot_F-serratus_M_contig998.21256.1Fucus serratus malepolypeptideF-serratus_M_contig998 145947..146264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig998.21256.1

>prot_F-serratus_M_contig998.21256.1 ID=prot_F-serratus_M_contig998.21256.1|Name=mRNA_F-serratus_M_contig998.21256.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MFLPNREPWPCLPMPGGCPGRRWCEPCGGPCEWPPMPSTVRRALPSTSPS
LTKRWGLTSRARSRALVSRGRSLMPPVTRAAWMGRRDSGFDFGFGSSCIL
SSFSRV
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mRNA from alignment at F-serratus_M_contig998:145698..146264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig998.21256.1 ID=mRNA_F-serratus_M_contig998.21256.1|Name=mRNA_F-serratus_M_contig998.21256.1|organism=Fucus serratus male|type=mRNA|length=567bp|location=Sequence derived from alignment at F-serratus_M_contig998:145698..146264+ (Fucus serratus male)
ATCGGCCTGCCATGGCCTCCCTCGCTGTCGCTGCTGAGGAGATGTATGTG
ACGGCCGGAGTGGTGCCGACCGTGGGGCGGGGGGTCCGAGTGCCCCCTCC
TGCCGCCACCGTGCCGACCGCGAGGTGGACCATGGTGGCGTGGAGGGCCG
TGCATCGGCCTGCCGTACTCTCCCTCAGAATCGCTGCCAGACAGGTGCAG
GTGACGGCCGGAGTGGTGCCGACCGTGAGGCGGGGGGCCAGAGTGCCCTA
TGTTCCTACCAAATCGAGAACCATGGCCGTGTTTGCCCATGCCGGGTGGG
TGTCCCGGACGAAGGTGGTGTGAGCCATGCGGAGGACCCTGCGAATGGCC
TCCAATGCCGTCCACGGTGCGAAGGGCCTTGCCGTCCACGAGCCCGAGCC
TTACGAAGCGGTGGGGGCTCACATCGAGAGCGCGAAGCAGGGCCTTGGTC
TCGCGGGGACGCAGTTTGATGCCGCCGGTCACCAGAGCCGCGTGGATGGG
GCGCCGCGACTCCGGCTTCGACTTCGGCTTCGGTTCCTCCTGCATATTGT
CGTCCTTTTCGAGGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig998:145698..146264+

>mRNA_F-serratus_M_contig998.21256.1 ID=mRNA_F-serratus_M_contig998.21256.1|Name=mRNA_F-serratus_M_contig998.21256.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig998:145698..146264+ (Fucus serratus male)
ATGTTCCTACCAAATCGAGAACCATGGCCGTGTTTGCCCATGCCGGGTGG
GTGTCCCGGACGAAGGTGGTGTGAGCCATGCGGAGGACCCTGCGAATGGC
CTCCAATGCCGTCCACGGTGCGAAGGGCCTTGCCGTCCACGAGCCCGAGC
CTTACGAAGCGGTGGGGGCTCACATCGAGAGCGCGAAGCAGGGCCTTGGT
CTCGCGGGGACGCAGTTTGATGCCGCCGGTCACCAGAGCCGCGTGGATGG
GGCGCCGCGACTCCGGCTTCGACTTCGGCTTCGGTTCCTCCTGCATATTG
TCGTCCTTTTCGAGGGTGATGTTCCTACCAAATCGAGAACCATGGCCGTG
TTTGCCCATGCCGGGTGGGTGTCCCGGACGAAGGTGGTGTGAGCCATGCG
GAGGACCCTGCGAATGGCCTCCAATGCCGTCCACGGTGCGAAGGGCCTTG
CCGTCCACGAGCCCGAGCCTTACGAAGCGGTGGGGGCTCACATCGAGAGC
GCGAAGCAGGGCCTTGGTCTCGCGGGGACGCAGTTTGATGCCGCCGGTCA
CCAGAGCCGCGTGGATGGGGCGCCGCGACTCCGGCTTCGACTTCGGCTTC
GGTTCCTCCTGCATATTGTCGTCCTTTTCGAGGGTG
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