mRNA_F-serratus_M_contig998.21252.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig998.21252.1
Unique NamemRNA_F-serratus_M_contig998.21252.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig998.21252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig998contigF-serratus_M_contig998:79032..79482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.6002097-UTR-F-serratus_M_contig998:79031..791011622932794.6002097-UTR-F-serratus_M_contig998:79031..79101Fucus serratus maleUTRF-serratus_M_contig998 79032..79101 +
1690964479.0196095-UTR-F-serratus_M_contig998:79031..791011690964479.0196095-UTR-F-serratus_M_contig998:79031..79101Fucus serratus maleUTRF-serratus_M_contig998 79032..79101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.6181686-CDS-F-serratus_M_contig998:79101..794821622932794.6181686-CDS-F-serratus_M_contig998:79101..79482Fucus serratus maleCDSF-serratus_M_contig998 79102..79482 +
1690964479.0307364-CDS-F-serratus_M_contig998:79101..794821690964479.0307364-CDS-F-serratus_M_contig998:79101..79482Fucus serratus maleCDSF-serratus_M_contig998 79102..79482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig998.21252.1prot_F-serratus_M_contig998.21252.1Fucus serratus malepolypeptideF-serratus_M_contig998 79102..79482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig998.21252.1

>prot_F-serratus_M_contig998.21252.1 ID=prot_F-serratus_M_contig998.21252.1|Name=mRNA_F-serratus_M_contig998.21252.1|organism=Fucus serratus male|type=polypeptide|length=127bp
MQLWEARRCCEVMWQQCVRVSSPERRKKVVEGSKPFCGMVACRYYFEEEW
CKVTTFFFWEWLFAPPVGHTQIYPTSWISRQKTRLVTIHARVCWCVAGLS
WGLSCSPNCPVYVMLRPVGWLVFSGM*
back to top

mRNA from alignment at F-serratus_M_contig998:79032..79482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig998.21252.1 ID=mRNA_F-serratus_M_contig998.21252.1|Name=mRNA_F-serratus_M_contig998.21252.1|organism=Fucus serratus male|type=mRNA|length=451bp|location=Sequence derived from alignment at F-serratus_M_contig998:79032..79482+ (Fucus serratus male)
TACGAGGGGTGAACGTACCGAGTACCTGTAGGACCTTTCGGTATTGGTAC
GTTCGTGGACTTCTGTGCTTATGCAACTTTGGGAGGCGAGGAGGTGTTGC
GAGGTGATGTGGCAGCAGTGTGTGCGTGTGTCCAGCCCAGAGCGGCGCAA
AAAAGTCGTGGAAGGTAGCAAACCTTTTTGCGGCATGGTAGCATGTCGTT
ATTATTTTGAGGAGGAATGGTGTAAGGTGACGACGTTTTTTTTTTGGGAA
TGGCTATTTGCCCCACCGGTGGGCCATACCCAAATTTACCCCACCAGCTG
GATCTCGCGTCAGAAGACACGGTTGGTCACAATACATGCACGAGTGTGTT
GGTGCGTTGCAGGGCTATCATGGGGTCTATCGTGCAGCCCAAATTGTCCT
GTCTACGTGATGTTACGGCCGGTGGGGTGGTTGGTGTTTTCTGGTATGTA
A
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig998:79032..79482+

>mRNA_F-serratus_M_contig998.21252.1 ID=mRNA_F-serratus_M_contig998.21252.1|Name=mRNA_F-serratus_M_contig998.21252.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig998:79032..79482+ (Fucus serratus male)
ATGCAACTTTGGGAGGCGAGGAGGTGTTGCGAGGTGATGTGGCAGCAGTG
TGTGCGTGTGTCCAGCCCAGAGCGGCGCAAAAAAGTCGTGGAAGGTAGCA
AACCTTTTTGCGGCATGGTAGCATGTCGTTATTATTTTGAGGAGGAATGG
TGTAAGGTGACGACGTTTTTTTTTTGGGAATGGCTATTTGCCCCACCGGT
GGGCCATACCCAAATTTACCCCACCAGCTGGATCTCGCGTCAGAAGACAC
GGTTGGTCACAATACATGCACGAGTGTGTTGGTGCGTTGCAGGGCTATCA
TGGGGTCTATCGTGCAGCCCAAATTGTCCTGTCTACGTGATGTTACGGCC
GGTGGGGTGGTTGGTGTTTTCTGGTATGTAAATGCAACTTTGGGAGGCGA
GGAGGTGTTGCGAGGTGATGTGGCAGCAGTGTGTGCGTGTGTCCAGCCCA
GAGCGGCGCAAAAAAGTCGTGGAAGGTAGCAAACCTTTTTGCGGCATGGT
AGCATGTCGTTATTATTTTGAGGAGGAATGGTGTAAGGTGACGACGTTTT
TTTTTTGGGAATGGCTATTTGCCCCACCGGTGGGCCATACCCAAATTTAC
CCCACCAGCTGGATCTCGCGTCAGAAGACACGGTTGGTCACAATACATGC
ACGAGTGTGTTGGTGCGTTGCAGGGCTATCATGGGGTCTATCGTGCAGCC
CAAATTGTCCTGTCTACGTGATGTTACGGCCGGTGGGGTGGTTGGTGTTT
TCTGGTATGTAA
back to top