mRNA_F-serratus_M_contig998.21251.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig998.21251.1
Unique NamemRNA_F-serratus_M_contig998.21251.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig998.21251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig998contigF-serratus_M_contig998:10511..10966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.9718797-UTR-F-serratus_M_contig998:10510..105341622932794.9718797-UTR-F-serratus_M_contig998:10510..10534Fucus serratus maleUTRF-serratus_M_contig998 10511..10534 +
1690964479.1438665-UTR-F-serratus_M_contig998:10510..105341690964479.1438665-UTR-F-serratus_M_contig998:10510..10534Fucus serratus maleUTRF-serratus_M_contig998 10511..10534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.9913876-CDS-F-serratus_M_contig998:10534..109661622932794.9913876-CDS-F-serratus_M_contig998:10534..10966Fucus serratus maleCDSF-serratus_M_contig998 10535..10966 +
1690964479.1549165-CDS-F-serratus_M_contig998:10534..109661690964479.1549165-CDS-F-serratus_M_contig998:10534..10966Fucus serratus maleCDSF-serratus_M_contig998 10535..10966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig998.21251.1prot_F-serratus_M_contig998.21251.1Fucus serratus malepolypeptideF-serratus_M_contig998 10535..10966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig998.21251.1

>prot_F-serratus_M_contig998.21251.1 ID=prot_F-serratus_M_contig998.21251.1|Name=mRNA_F-serratus_M_contig998.21251.1|organism=Fucus serratus male|type=polypeptide|length=144bp
MSPAETEPNSGSAKRAPEATATLYRVAARNLRKSQGVNSMTAPMLEKIMT
LLQLEPRRLVVRGLAPRRLLLGASPAPLPTMEDSPDVEENERYEESGMFG
DDINDHTSEAEQVEADEREKEDTSGDGNDDTLEKYDQMQEEPNP
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mRNA from alignment at F-serratus_M_contig998:10511..10966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig998.21251.1 ID=mRNA_F-serratus_M_contig998.21251.1|Name=mRNA_F-serratus_M_contig998.21251.1|organism=Fucus serratus male|type=mRNA|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig998:10511..10966+ (Fucus serratus male)
AGCAACGACAGGAACAACTCCATCATGAGTCCCGCCGAGACTGAGCCCAA
CAGCGGCAGCGCCAAACGAGCGCCCGAAGCGACAGCCACCCTCTACAGGG
TAGCCGCACGCAACTTGCGCAAGTCTCAAGGGGTGAACTCCATGACGGCG
CCCATGCTTGAGAAGATCATGACACTCCTGCAGCTGGAGCCTCGGCGGCT
GGTCGTACGGGGTCTAGCTCCTCGAAGGCTGCTTCTGGGAGCATCGCCTG
CACCACTGCCCACGATGGAGGACAGCCCTGATGTAGAAGAAAATGAGAGA
TACGAGGAGAGCGGGATGTTTGGAGATGACATCAACGACCACACGTCGGA
GGCGGAGCAGGTGGAGGCAGATGAGCGAGAAAAGGAGGACACCTCGGGAG
ACGGCAATGATGACACCCTCGAAAAGTACGACCAGATGCAGGAGGAACCG
AACCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig998:10511..10966+

>mRNA_F-serratus_M_contig998.21251.1 ID=mRNA_F-serratus_M_contig998.21251.1|Name=mRNA_F-serratus_M_contig998.21251.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig998:10511..10966+ (Fucus serratus male)
ATGAGTCCCGCCGAGACTGAGCCCAACAGCGGCAGCGCCAAACGAGCGCC
CGAAGCGACAGCCACCCTCTACAGGGTAGCCGCACGCAACTTGCGCAAGT
CTCAAGGGGTGAACTCCATGACGGCGCCCATGCTTGAGAAGATCATGACA
CTCCTGCAGCTGGAGCCTCGGCGGCTGGTCGTACGGGGTCTAGCTCCTCG
AAGGCTGCTTCTGGGAGCATCGCCTGCACCACTGCCCACGATGGAGGACA
GCCCTGATGTAGAAGAAAATGAGAGATACGAGGAGAGCGGGATGTTTGGA
GATGACATCAACGACCACACGTCGGAGGCGGAGCAGGTGGAGGCAGATGA
GCGAGAAAAGGAGGACACCTCGGGAGACGGCAATGATGACACCCTCGAAA
AGTACGACCAGATGCAGGAGGAACCGAACCCGATGAGTCCCGCCGAGACT
GAGCCCAACAGCGGCAGCGCCAAACGAGCGCCCGAAGCGACAGCCACCCT
CTACAGGGTAGCCGCACGCAACTTGCGCAAGTCTCAAGGGGTGAACTCCA
TGACGGCGCCCATGCTTGAGAAGATCATGACACTCCTGCAGCTGGAGCCT
CGGCGGCTGGTCGTACGGGGTCTAGCTCCTCGAAGGCTGCTTCTGGGAGC
ATCGCCTGCACCACTGCCCACGATGGAGGACAGCCCTGATGTAGAAGAAA
ATGAGAGATACGAGGAGAGCGGGATGTTTGGAGATGACATCAACGACCAC
ACGTCGGAGGCGGAGCAGGTGGAGGCAGATGAGCGAGAAAAGGAGGACAC
CTCGGGAGACGGCAATGATGACACCCTCGAAAAGTACGACCAGATGCAGG
AGGAACCGAACCCG
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