mRNA_F-serratus_M_contig997.21250.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig997.21250.1
Unique NamemRNA_F-serratus_M_contig997.21250.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig997.21250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig997contigF-serratus_M_contig997:192847..195078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons5
Model size391
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig997.21250.1prot_F-serratus_M_contig997.21250.1Fucus serratus malepolypeptideF-serratus_M_contig997 192848..195078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.261288-CDS-F-serratus_M_contig997:192847..1929481622932794.261288-CDS-F-serratus_M_contig997:192847..192948Fucus serratus maleCDSF-serratus_M_contig997 192848..192948 -
1690964478.8894918-CDS-F-serratus_M_contig997:192847..1929481690964478.8894918-CDS-F-serratus_M_contig997:192847..192948Fucus serratus maleCDSF-serratus_M_contig997 192848..192948 -
1622932794.278818-CDS-F-serratus_M_contig997:193616..1936921622932794.278818-CDS-F-serratus_M_contig997:193616..193692Fucus serratus maleCDSF-serratus_M_contig997 193617..193692 -
1690964478.9022255-CDS-F-serratus_M_contig997:193616..1936921690964478.9022255-CDS-F-serratus_M_contig997:193616..193692Fucus serratus maleCDSF-serratus_M_contig997 193617..193692 -
1622932794.2975483-CDS-F-serratus_M_contig997:193975..1940241622932794.2975483-CDS-F-serratus_M_contig997:193975..194024Fucus serratus maleCDSF-serratus_M_contig997 193976..194024 -
1690964478.9112637-CDS-F-serratus_M_contig997:193975..1940241690964478.9112637-CDS-F-serratus_M_contig997:193975..194024Fucus serratus maleCDSF-serratus_M_contig997 193976..194024 -
1622932794.3160625-CDS-F-serratus_M_contig997:194580..1946511622932794.3160625-CDS-F-serratus_M_contig997:194580..194651Fucus serratus maleCDSF-serratus_M_contig997 194581..194651 -
1690964478.9245133-CDS-F-serratus_M_contig997:194580..1946511690964478.9245133-CDS-F-serratus_M_contig997:194580..194651Fucus serratus maleCDSF-serratus_M_contig997 194581..194651 -
1622932794.3347986-CDS-F-serratus_M_contig997:194985..1950781622932794.3347986-CDS-F-serratus_M_contig997:194985..195078Fucus serratus maleCDSF-serratus_M_contig997 194986..195078 -
1690964478.9341402-CDS-F-serratus_M_contig997:194985..1950781690964478.9341402-CDS-F-serratus_M_contig997:194985..195078Fucus serratus maleCDSF-serratus_M_contig997 194986..195078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig997.21250.1

>prot_F-serratus_M_contig997.21250.1 ID=prot_F-serratus_M_contig997.21250.1|Name=mRNA_F-serratus_M_contig997.21250.1|organism=Fucus serratus male|type=polypeptide|length=130bp
KSHTTSEGFSSMTGGSSNSTTVWDDMVDSTMTWDAYHWAFGWIPATFCAG
IVSAFCKCLCSKRSRTRVILTMLAYVIGYWGFLLTVLLVVPLFPCQVYCE
YIEMTRRHACSTSLRNPNWRRRSWLVVMRA
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mRNA from alignment at F-serratus_M_contig997:192847..195078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig997.21250.1 ID=mRNA_F-serratus_M_contig997.21250.1|Name=mRNA_F-serratus_M_contig997.21250.1|organism=Fucus serratus male|type=mRNA|length=2232bp|location=Sequence derived from alignment at F-serratus_M_contig997:192847..195078- (Fucus serratus male)
AAGAGCCACACTACCTCCGAAGGTTTTAGCTCAATGACGGGAGGATCCAG
CAACTCAACGACAGTTTGGGATGACATGGTGGATTCAACTATGGTGAGGA
AATCATACAAACATTCAAACTTAATAGCCGAAGCAAAACAATTCCCAACT
TATCCGCCGGGCGGTCCTGCCAAGAGCGATCGAGCCGCATGGCAGGATTC
TAGGCTAACATATTTAAAACTTGTGTTGGATAAAGTAAGCGAAGTCTAAC
AAGGTAATTATCTGTCGAGCCAGGGCCCGCCCTTTTTGCCCGTCAAACCA
TCGCCGTGACGGTGTAAACTAGATACCAAAGACACGCCGGCGATTACGAA
ACACTATTAAAAAAATGGAAGAGGTTCAATCACCCCTTTTGTTTTTTTCG
TTCCTTGACCACAATTAATTATTGCAGACCTGGGACGCTTATCATTGGGC
TTTCGGCTGGATTCCTGCTACGTTCTGTGCCGGGATTGTGTCTGCTTTGT
GAGTCCCGACTAAGTAGCTTTATCGGGTTTTCGTTGAGCGGAGAATGAGA
GGATATACCTGGAGATATTGTTTCTTCCATATTATCGAATTTTGGGCAAT
TCCATTGAAAAAGCTATAGCAGCTTAATATTTGTTTCAGCATCATAGCGT
CTTCAAGGTACAATCCTCTTACACGAAAAACGCGTCTGCCCCTTTCCTTT
ACCGCTCAGGTCGTGCTCGCGTTCGTATTAGAGCTGAATTTGATAGACAT
GCACGAGGTGCTCGTACCACTCTCTGGCGATTATCATAGCATTCACTTTT
AAAACCAGTCAGTGCTGACAAATATTACTACAACAGTGTTTATAGTCCCT
TGAGCATCTGACTTTCACGAACACCGCTAGCTTATTCCAGTCCAACAGGG
AGTGTAACGATTGTTGGGAGGATGATGTAACTTGTCCTACTCTGTTACAT
GGCTCGCGTCTTCCTGCCTCGCCGAGGAGACCAACACAGTGACCTTCGTG
TTCTCCCTCTTCTCCCGCGTACGATGCTTGCGCCTTTATTTTTTCGTTCT
GAAGCTGCAAATGTCTATGTTCTAAAAGGAGTCGGACCCGAGTGATATTG
ACGGTAAGTTTTCGTTTTGATAGAACGGTGTTTTTTGGTTCTTTTCCCTC
TCTCCGTTCTTGTCTACTTTGGTAATATAATGTGTTCCTGGTGAGTGGCG
TCCATCATCGGCATAGTAGAAACGTTTTCCTCCCAAGCTTTTGTTTCCCT
TGTTACGGTTTAAGCTGTTTTCCGATGCCTCCTAAAGTAAGCATGCATGA
AAGACATAACTTTAGACTAGTTGAGTTCGAGCCCTTTCCCCGATCCCAAA
CTATGTTTATGATGTGACATAATATAATGCACGCAGATGCTGGCATACGT
CATCGGATATTGGGGCTTTCTATTGACCGTACTTCTCGTGGTGCCCCTAT
TCCCTTGCCAAGGTGAGATAGCTTGCTTCGTCAAAATTGTAAAATGGTTT
TCGTTGGGCTCTAAAACCCATTCGTAGACAACACAAAATTATAACTAGTT
CCCGAAAGGCTTGATCCCAAATACAATGATTTCAGAGATCTGCTGCGGTT
TTCCTTGGTGCCACAACACCAGCAAATGTACCCTCTTTGATTATGTCTAG
TTTCTTACTGTTTACACCGGCACATTTTTTAGCCGACACTGGATTCACAC
TCGACCCGTTTCTCACCATGTTGTACAGTAATAATTGCCTTAGTTGACTT
ATGCTTGCTCCCTGTCAAGTCTCGTACGCCGACGATTTTCTGCATACTGT
AGATGTCTTGCAAATGTATTTCTCTAGATCTACATTTCGCTCATCGTCGA
CTCTGCCTTCTCTAAAATTCACTGTTGTTGCGTTCGCTTCGATTATCATT
GTATAATTTGCTCAACAAGTGATTGGATTACACTCATATATCTTTTGTAC
AATACTGCATAGAAGAAAGCGTCGGAGTCGTGCTTTTCCACAACCGAGTT
CAGTCAAATCATCTGGTTGGTACAACCACAGTTTGATGTTTGCTACATTG
TGTTTGCCGTACGACTGAGCACGCTAAACTCGCAACTCATTTCAACTCCA
TATCATTCGCATGAACTCGCTCCCATTCAGTGTATTGTGAATACATCGAG
ATGACCCGCCGCCATGCGTGCAGCACCTCTCTGAGGAACCCCAATTGGAG
GCGTCGGTCCTGGCTCGTGGTCATGCGAGCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig997:192847..195078-

>mRNA_F-serratus_M_contig997.21250.1 ID=mRNA_F-serratus_M_contig997.21250.1|Name=mRNA_F-serratus_M_contig997.21250.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig997:192847..195078- (Fucus serratus male)
AAGAGCCACACTACCTCCGAAGGTTTTAGCTCAATGACGGGAGGATCCAG
CAACTCAACGACAGTTTGGGATGACATGGTGGATTCAACTATGAAGAGCC
ACACTACCTCCGAAGGTTTTAGCTCAATGACGGGAGGATCCAGCAACTCA
ACGACAGTTTGGGATGACATGGTGGATTCAACTATGACCTGGGACGCTTA
TCATTGGGCTTTCGGCTGGATTCCTGCTACGTTCTGTGCCGGGATTGTGT
CTGCTTTACCTGGGACGCTTATCATTGGGCTTTCGGCTGGATTCCTGCTA
CGTTCTGTGCCGGGATTGTGTCTGCTTTCTGCAAATGTCTATGTTCTAAA
AGGAGTCGGACCCGAGTGATATTGACGCTGCAAATGTCTATGTTCTAAAA
GGAGTCGGACCCGAGTGATATTGACGATGCTGGCATACGTCATCGGATAT
TGGGGCTTTCTATTGACCGTACTTCTCGTGGTGCCCCTATTCCCTTGCCA
AGATGCTGGCATACGTCATCGGATATTGGGGCTTTCTATTGACCGTACTT
CTCGTGGTGCCCCTATTCCCTTGCCAAGTGTATTGTGAATACATCGAGAT
GACCCGCCGCCATGCGTGCAGCACCTCTCTGAGGAACCCCAATTGGAGGC
GTCGGTCCTGGCTCGTGGTCATGCGAGCGTGTATTGTGAATACATCGAGA
TGACCCGCCGCCATGCGTGCAGCACCTCTCTGAGGAACCCCAATTGGAGG
CGTCGGTCCTGGCTCGTGGTCATGCGAGCG
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