mRNA_F-serratus_M_contig997.21249.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig997.21249.1
Unique NamemRNA_F-serratus_M_contig997.21249.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig997.21249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig997contigF-serratus_M_contig997:30280..32313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue8.9e-08
Seed eggNOG ortholog2880.D8LDM4
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005615,GO:0044421
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size348
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.4490304-CDS-F-serratus_M_contig997:30279..304711622932794.4490304-CDS-F-serratus_M_contig997:30279..30471Fucus serratus maleCDSF-serratus_M_contig997 30280..30471 -
1690964478.963087-CDS-F-serratus_M_contig997:30279..304711690964478.963087-CDS-F-serratus_M_contig997:30279..30471Fucus serratus maleCDSF-serratus_M_contig997 30280..30471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.4718468-UTR-F-serratus_M_contig997:32157..323131622932794.4718468-UTR-F-serratus_M_contig997:32157..32313Fucus serratus maleUTRF-serratus_M_contig997 32158..32313 -
1690964478.976194-UTR-F-serratus_M_contig997:32157..323131690964478.976194-UTR-F-serratus_M_contig997:32157..32313Fucus serratus maleUTRF-serratus_M_contig997 32158..32313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig997.21249.1prot_F-serratus_M_contig997.21249.1Fucus serratus malepolypeptideF-serratus_M_contig997 30280..30471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig997.21249.1

>prot_F-serratus_M_contig997.21249.1 ID=prot_F-serratus_M_contig997.21249.1|Name=mRNA_F-serratus_M_contig997.21249.1|organism=Fucus serratus male|type=polypeptide|length=64bp
MDKDLKLDLEANAFSTENALYFARLSEIAYKSEDEAKAIIQGDGDTKHGV
MGFDCFHWFEVCI*
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mRNA from alignment at F-serratus_M_contig997:30280..32313-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig997.21249.1 ID=mRNA_F-serratus_M_contig997.21249.1|Name=mRNA_F-serratus_M_contig997.21249.1|organism=Fucus serratus male|type=mRNA|length=2034bp|location=Sequence derived from alignment at F-serratus_M_contig997:30280..32313- (Fucus serratus male)
TGGAGGAGACAGAGACATCAAGGCAACGGCGAATCGGTATTTTGAGGCAC
TAACAGCGACCGGCGGCCACTTCTTGACGCAGCTCACACTTGAGCCTATA
GAAAGAAGGGATTTTTTATTGGCGTCCAGTCGCAGAAGGAGAGCAAATCA
ATCAAGGTAAGCCCTGTTGCCCCTCTGGCCTATTTCATACAGACGGAGCA
TCGGAGGTTGACGTTCTTAAGGTGGCCCGAGAAACGGCTGTGTTGTTTGG
TGTTCCACCTACTAACACAATCACCCGCGATTTTTTGCGTAGTTATCTAG
CCTTTTATGCTGCTTGCACACAAATCGTGCGTCGATTTACCTTCTGATGA
TTGCGAAACCGTCATTTATCTCTGATTTCTCCTTCGGTCGTGTCATATCA
CCATATAATATGCTCCGTACAATGCCGGGCAGTCATTGTCTACTTAGTAC
TCACTGCGGTATATATTATATTCTAAATGTTTAGGCTCTTCTAATACTGG
GTGTGTTTTATATTGTACACATACTTCTACTTTTTACACTTTTACACTAC
TGTTAGTATGCCCTCGTCGCCCGACCGAGTGGTATAGTAGGTAACCTGCA
CACCTGCTAGTCGTGCGGAAGACGTGAGTTCGATTCTCGTCAATCAAAAT
TTGTCTCATTTCTGCTGTGTGTAGCGAAAAGCGTGAGAACATGATTATTA
CGTAAAATTCGACCATACATTGTGATTGGTTGACGAGTTCTAAGGGTGCC
GAACTTGTGTCGCGATAGAAACTCTTAAAGTGTAAGCCGGGGAGAGATGG
GAAGATCCTTAGTGACCACAGGCAGGATGGTAACGTTGTGGCCCATCGGC
TATAAGTGAGATTACAATAATTAAATAAATAAAATAGTAGTAGCACTGCA
CCGACAATGCTCAACCGATATGAGATCACAACAGAAACATGCTGGGCATG
GCATGAAAGAAACATAATCGAAACAACCTAATCCAACAACAACAAAAGTC
CATCCATCTCGACAGCCAATCGAGCGTTGAAGCAGAACAAAACGTCTTAG
ATATTATATAGTAGGTCAAGGTTTACTACTAGGGGGAACTTGGGACGATT
GTCAGGTAACCACCATGCCACGACGAATTTCAGTAAAAGGAAAATACAAA
AAATATGTATACTACTGTAAACCATTTTGACTTAGATACAGAAGTTAGGT
ACCGGTATAAATTGGGAGACACGGACATAAATATTTCTTGTAACATGCCG
GTACGCAGTACATTTAAAGGACACGTACTACAGTAGTACCAGCCCGCTCG
TAAAAATGTACTGGTATGTGATAAGAAAGTGAGGCTCAACTTGCTTGGTC
CCATAAAAATATGAGCTCATTCCCTGCATACACCTCATTTGTATGTTCGA
ATTTATTATGGCATGCACCTCACGCTGTCGCCCTGGATAAGGTTTGGAGC
CTCTGCCCAAAATAATAGGGTTTCTTTTATAAGCGGGCCGGTACTGTACT
GAGTACTGTATGTTGTACATAATATAGCAAGTTAAATACAGAAGACACCA
ATCCCGGAAGCATGCCCTGTGCACTTGGCAGATTGAAGGGGCCGTGAGCG
CGTACTAATTTAAATGGACGTTAGCTTCGCCACTCCTTCTTGAAGTCGTG
TTTTGATCCACGTTAATAAAGTGAGATAATAGTGTTATGTAGGATACTTG
TTTTGTTGCGGTAAACCGCTACAATACTGAGCTCGCCTCGCTCCCGTAAA
CTCGGGCCTCGGGATGGTTCGTACAGTACGTACTGCTGATGAAGGAAACA
ATTTACTGTTGCTCGTCTTTTCTTGTGGCGGCTCACTCTCAGATGGACAA
GGACCTGAAGCTCGATCTCGAGGCCAATGCCTTCTCGACAGAAAACGCCC
TGTACTTTGCTCGATTGAGCGAAATTGCATACAAGTCGGAGGATGAGGCA
AAAGCAATCATCCAGGGAGACGGCGACACCAAGCATGGAGTAATGGGCTT
CGATTGCTTCCATTGGTTCGAGGTGTGCATATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig997:30280..32313-

>mRNA_F-serratus_M_contig997.21249.1 ID=mRNA_F-serratus_M_contig997.21249.1|Name=mRNA_F-serratus_M_contig997.21249.1|organism=Fucus serratus male|type=CDS|length=384bp|location=Sequence derived from alignment at F-serratus_M_contig997:30280..32313- (Fucus serratus male)
ATGGACAAGGACCTGAAGCTCGATCTCGAGGCCAATGCCTTCTCGACAGA
AAACGCCCTGTACTTTGCTCGATTGAGCGAAATTGCATACAAGTCGGAGG
ATGAGGCAAAAGCAATCATCCAGGGAGACGGCGACACCAAGCATGGAGTA
ATGGGCTTCGATTGCTTCCATTGGTTCGAGGTGTGCATATGAATGGACAA
GGACCTGAAGCTCGATCTCGAGGCCAATGCCTTCTCGACAGAAAACGCCC
TGTACTTTGCTCGATTGAGCGAAATTGCATACAAGTCGGAGGATGAGGCA
AAAGCAATCATCCAGGGAGACGGCGACACCAAGCATGGAGTAATGGGCTT
CGATTGCTTCCATTGGTTCGAGGTGTGCATATGA
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