mRNA_F-serratus_M_contig997.21248.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig997.21248.1
Unique NamemRNA_F-serratus_M_contig997.21248.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: UPI001E339CB8 (lipase family protein n=1 Tax=Marinibactrum sp. C21 TaxID=2904075 RepID=UPI001E339CB8)

HSP 1 Score: 59.7 bits (143), Expect = 1.830e-8
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 DWATNLN-FVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW  N+N F T++    +G     + H+GF + V  VW    + D  + L +   +KR LFITGHSLG A+ATV AA L  E     T++YT+G P
Sbjct:   87 DWLDNINAFSTKEL---FG-----EFHRGFWNSVEDVWQP--INDRFRELQSH--RKRPLFITGHSLGGAMATVAAAKLVHEDK-PFTSVYTFGQP 169
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BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: A0A369WD62_9GAMM (Lipase family protein n=1 Tax=Motiliproteus coralliicola TaxID=2283196 RepID=A0A369WD62_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 1.910e-8
Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 DWATNLN-FVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW  N+N F T+     +G     + H+GF + V  VW    + D  + L  +Q ++R LF+TGHSLG A+ATV AA +  E     T++YT+G P
Sbjct:   93 DWLDNINAFATQQL---FG-----EFHRGFWNSVEDVWKP--LNDKFRDL--QQQRRRPLFLTGHSLGGAMATVAAARMVHEDK-PFTSVYTFGQP 175
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BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: A0A6G6KA23_9BACT (Lipase family protein n=2 Tax=Roseimicrobium sp. ORNL1 TaxID=2711231 RepID=A0A6G6KA23_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.110e-8
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    1 DWATNLNFVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW T+L F   ++      S    VH GF D +  +W    +R+ I SL  ++   R +++TGHSLGAALAT+ AA L      ++  +YT+GSP
Sbjct:  104 DWITDLRFALAES------SHGGFVHLGFKDALGVIWEP--LRESIMSLLRDE-PNRPIWMTGHSLGAALATLAAARLG-----HVKGVYTFGSP 184
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BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: W4CNS2_9BACL (Lipase class 3 n=4 Tax=Paenibacillus TaxID=44249 RepID=W4CNS2_9BACL)

HSP 1 Score: 59.3 bits (142), Expect = 2.450e-8
Identity = 32/95 (33.68%), Postives = 46/95 (48.42%), Query Frame = 1 
Query:    1 DWATNLNFVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW +N+N   +       +   C  H+GF D      +    RD I S+      ++ L++TGHSLG ALAT+ A  +A         +YTYGSP
Sbjct:   78 DWLSNMNAAQKKFKY---IQEPCMTHRGFTD------IYASARDAILSVLGTLSPEKTLYVTGHSLGGALATLCALDVAANSAFTTPRLYTYGSP 163
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BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: A0A450SMN4_9GAMM (Lipase (Class 3) n=2 Tax=Candidatus Kentron sp. DK TaxID=2126562 RepID=A0A450SMN4_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 2.590e-8
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:    1 DWATNLN-FVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLYNE--QGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW  N+N F T+     +G     + H+GF   V  VW      +V+ S Y E  + KKR LFITGHSLG A+AT+ AA    E     T++YT+G P
Sbjct:   87 DWLDNINAFSTKQL---FG-----EFHRGFWHSVEDVW------EVLFSGYQELLERKKRPLFITGHSLGGAMATIAAARFLHEGR-PFTSVYTFGQP 169
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E339CB81.830e-840.63lipase family protein n=1 Tax=Marinibactrum sp. C2... [more]
A0A369WD62_9GAMM1.910e-838.54Lipase family protein n=1 Tax=Motiliproteus corall... [more]
A0A6G6KA23_9BACT2.110e-837.89Lipase family protein n=2 Tax=Roseimicrobium sp. O... [more]
W4CNS2_9BACL2.450e-833.68Lipase class 3 n=4 Tax=Paenibacillus TaxID=44249 R... [more]
A0A450SMN4_9GAMM2.590e-840.82Lipase (Class 3) n=2 Tax=Candidatus Kentron sp. DK... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig997contigF-serratus_M_contig997:29493..29980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D8LDK4
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005615,GO:0044421
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size292
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.3892105-CDS-F-serratus_M_contig997:29492..297021622932794.3892105-CDS-F-serratus_M_contig997:29492..29702Fucus serratus maleCDSF-serratus_M_contig997 29493..29702 -
1690964478.9431713-CDS-F-serratus_M_contig997:29492..297021690964478.9431713-CDS-F-serratus_M_contig997:29492..29702Fucus serratus maleCDSF-serratus_M_contig997 29493..29702 -
1622932794.403903-CDS-F-serratus_M_contig997:29899..299801622932794.403903-CDS-F-serratus_M_contig997:29899..29980Fucus serratus maleCDSF-serratus_M_contig997 29900..29980 -
1690964478.9537036-CDS-F-serratus_M_contig997:29899..299801690964478.9537036-CDS-F-serratus_M_contig997:29899..29980Fucus serratus maleCDSF-serratus_M_contig997 29900..29980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig997.21248.1prot_F-serratus_M_contig997.21248.1Fucus serratus malepolypeptideF-serratus_M_contig997 29493..29980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig997.21248.1

>prot_F-serratus_M_contig997.21248.1 ID=prot_F-serratus_M_contig997.21248.1|Name=mRNA_F-serratus_M_contig997.21248.1|organism=Fucus serratus male|type=polypeptide|length=97bp
DWATNLNFVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLY
NEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSPT*
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mRNA from alignment at F-serratus_M_contig997:29493..29980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig997.21248.1 ID=mRNA_F-serratus_M_contig997.21248.1|Name=mRNA_F-serratus_M_contig997.21248.1|organism=Fucus serratus male|type=mRNA|length=488bp|location=Sequence derived from alignment at F-serratus_M_contig997:29493..29980- (Fucus serratus male)
GACTGGGCCACTAACTTGAATTTTGTTACCAGAGACGCGCCGGTAGCGTG
GGGCTTGAGCGTCAACTGCGACGTCCACAAGGTGACTAATCCCACCTACT
TCATTGTATTAGCACGTCGAACTTCTTGCCTGGGTAGGTATGAGTGGATC
CCTAGCGCGCGGGACTTACCGATGTGCTCCCACCCCAAGGTAGAAATGGA
ATCGCCTTAAACACCTCCAGACTGTGCTACAAAATCGTCGAGACTCTCAC
GCCTTTCGGCTTGTCGTGTTTGCGGCAGGGCTTCGACGACGGCGTGAACA
CTGTTTGGGTGGGATGCGGTATGCGCGACGTGATAAAATCGCTCTACAAC
GAGCAAGGAAAGAAGAGGAAGCTTTTCATCACGGGACACTCGCTTGGCGC
TGCCCTCGCCACTGTTACCGCGGCTCATCTGGCCTTCGAGCAGAACATCA
ATATCACCGCTATCTACACTTACGGAAGTCCTACGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig997:29493..29980-

>mRNA_F-serratus_M_contig997.21248.1 ID=mRNA_F-serratus_M_contig997.21248.1|Name=mRNA_F-serratus_M_contig997.21248.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig997:29493..29980- (Fucus serratus male)
GACTGGGCCACTAACTTGAATTTTGTTACCAGAGACGCGCCGGTAGCGTG
GGGCTTGAGCGTCAACTGCGACGTCCACAAGGACTGGGCCACTAACTTGA
ATTTTGTTACCAGAGACGCGCCGGTAGCGTGGGGCTTGAGCGTCAACTGC
GACGTCCACAAGGGCTTCGACGACGGCGTGAACACTGTTTGGGTGGGATG
CGGTATGCGCGACGTGATAAAATCGCTCTACAACGAGCAAGGAAAGAAGA
GGAAGCTTTTCATCACGGGACACTCGCTTGGCGCTGCCCTCGCCACTGTT
ACCGCGGCTCATCTGGCCTTCGAGCAGAACATCAATATCACCGCTATCTA
CACTTACGGAAGTCCTACGTGAGGCTTCGACGACGGCGTGAACACTGTTT
GGGTGGGATGCGGTATGCGCGACGTGATAAAATCGCTCTACAACGAGCAA
GGAAAGAAGAGGAAGCTTTTCATCACGGGACACTCGCTTGGCGCTGCCCT
CGCCACTGTTACCGCGGCTCATCTGGCCTTCGAGCAGAACATCAATATCA
CCGCTATCTACACTTACGGAAGTCCTACGTGA
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