mRNA_F-serratus_M_contig997.21248.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig997.21248.1
Unique NamemRNA_F-serratus_M_contig997.21248.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: D8LDL1_ECTSI (Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL1_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.090e-29
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 DWATNLNFVTRDAPVAWGLSVN-CDVHKGFDDGVNTVWVGC---GMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW TNLN   R A   W + +  CD+H+GFDDGV+TVW+     GM   IK+LYNE GK RKL+I GHSLG ALAT+ AA L+F  ++NI  IYT GSP
Sbjct:   99 DWTTNLNMGLRSARNEWKIDLEGCDLHRGFDDGVDTVWLPSSKNGMYQTIKNLYNEHGKSRKLYIAGHSLGGALATIAAARLSFVDDMNIAGIYTIGSP 197          
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: A0A6H5L4H8_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4H8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 4.280e-27
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 DWATNLNFVTRDAPVAWGL-SVNCDVHKGFDDGVNTVWVGC-----GMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW TN + + RD P  W L + + D+H+GFDDGVNTVW        GM  VIK  Y+E+G+ RKL+ITGHSLG ALAT+ AA L F  ++N+ A+YT GSP
Sbjct:  123 DWLTNFSILPRDIPKDWKLETTDGDLHRGFDDGVNTVWNPGPGHPEGMLAVIKRFYHEEGRSRKLYITGHSLGGALATIAAARLVFVDDLNVAALYTIGSP 223          
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: A0A6H5KWV7_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWV7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.300e-27
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 DWATNLNFVTRDAPVAWGLS-VNCDVHKGFDDGVNTVWVG-----CGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW TN N V R  P  W L  + CDVH+GFDD V TVW        GMR++IK+L  E+GK RKL++ GHSLG ALATV AA LAF  ++ I+ IYT GSP
Sbjct:  149 DWTTNFNLVRRLVPSDWLLDGLGCDVHQGFDDAVETVWNPGSAHPSGMRNIIKTLCKEEGKHRKLYLAGHSLGGALATVAAARLAFMDDVKISGIYTIGSP 249          
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: D8LDK8_ECTSI (Putative lipase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.030e-24
Identity = 54/98 (55.10%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 DWATNLNFVTRDAPVAWGL--SVNCDVHKGFDDGVNTVW-VGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DWATNL+   RD    W    +V   VH+GF++GV++VW V   MR VIK+LYNE+GK RKL+I GHSLG ALATV AA L++  N++I  +YT GSP
Sbjct:   93 DWATNLDISPRDCAEQWEAPDAVGA-VHEGFNEGVDSVWEVRGNMRKVIKNLYNEKGKDRKLYIAGHSLGGALATVAAARLSYIDNLDIAGVYTIGSP 189          
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: A0A1V4AQB0_9BACT (Lipase_3 domain-containing protein n=1 Tax=Candidatus Brocadia caroliniensis TaxID=1004156 RepID=A0A1V4AQB0_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 4.800e-11
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 DWATNLNFVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW T++N    + P       +  VH+GF   +++VW     RD+   + NE+ K R L+ITGHSLGAALAT+  A L  E++  +  +YT+G P
Sbjct:   80 DWMTDINIDLINGP-------DGKVHEGFSMAISSVW-----RDIWSFIRNER-KGRALWITGHSLGAALATLAVAKLRLEKDEPVNGLYTFGQP 161          
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: A0A5J6PIS2_9GAMM (Lipase family protein n=1 Tax=Cellvibrio sp. KY-GH-1 TaxID=2303332 RepID=A0A5J6PIS2_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 6.540e-11
Identity = 39/95 (41.05%), Postives = 50/95 (52.63%), Query Frame = 1
Query:    1 DWATNLNFVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW TN  F       A G+     VH+GF D +  VW      D+ + L   Q K + L+ITGHSLG ALAT+ AAH A   +  +  IYT+G P
Sbjct:   76 DWMTNAAFDLTS--FAGGIG---KVHRGFSDALYLVW-----NDITQILARVQTKAQALWITGHSLGGALATLAAAHFALVLDKPVRGIYTFGQP 160          
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: UPI00068A2657 (lipase family protein n=1 Tax=Endozoicomonas numazuensis TaxID=1137799 RepID=UPI00068A2657)

HSP 1 Score: 66.6 bits (161), Expect = 7.230e-11
Identity = 33/96 (34.38%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 DWATNLNFVTRDAPVAWGLSVNC-DVHKGFDDGVNTVWVGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW+ N + +  D    W    N   VH+GF +G+++VW       + + L   +   + ++ITGHSLG ALAT+ AA L F++N+ +  +Y++G P
Sbjct:   97 DWSLNFDIMRED----WTPENNLGSVHRGFVEGLDSVWT-----TIKERLTRLRNNHQSIWITGHSLGGALATLAAATLEFQENLPVAGVYSFGQP 183          
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: A0A2D4ZEU1_9BACT (Lipase_3 domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D4ZEU1_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 2.780e-10
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    4 WATNLNFVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            W  N++ +    P       N  VH+GF+ G++ +       D+I  +   Q KKR LFITGHSLG A+A + AAHL  E+ +   +IYTYG+P
Sbjct:   79 WQENIDALFSPGP----FGSNDRVHRGFNLGISQI-----KDDLITKIKITQNKKRPLFITGHSLGGAIANIFAAHLLHEE-LKPYSIYTYGAP 162          
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: A0A651HN81_9BACT (Lipase family protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A651HN81_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 8.620e-10
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 1
Query:    1 DWATNLNFVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            +W TNL++       AWG  V   +H GF D ++ V  G  +RD +  +   +   R+LFITGHSLG ALAT+ A   A    + +  +YT+G+P
Sbjct:  364 NWITNLSYRPLQPRSAWGPGVA--IHPGFGDALDLVHGG--IRDRVTEVLTPE---RRLFITGHSLGGALATLFAFRAAAVDGLPVQGVYTFGAP 451          
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Match: A0A1B1NNE9_9VIBR (Lipase_3 domain-containing protein n=3 Tax=Vibrio scophthalmi TaxID=45658 RepID=A0A1B1NNE9_9VIBR)

HSP 1 Score: 63.2 bits (152), Expect = 1.150e-9
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 1
Query:    1 DWATNLN-FVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLYNEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSP 285
            DW  NLN F T D   A+        H+GF   +  VW     R      Y +Q K R LFITGHSLG A+AT+ AA L  E     T++YT+G P
Sbjct:  110 DWLDNLNAFATNDLFGAF--------HRGFWQSLEDVWPSLNER----FRYLQQHKPRPLFITGHSLGGAMATIAAAKLVHEDK-PFTSVYTFGQP 192          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig997.21248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDL1_ECTSI2.090e-2956.57Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5L4H8_9PHAE4.280e-2753.47Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KWV7_9PHAE4.300e-2755.45Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
D8LDK8_ECTSI1.030e-2455.10Putative lipase n=2 Tax=Ectocarpus siliculosus Tax... [more]
A0A1V4AQB0_9BACT4.800e-1138.95Lipase_3 domain-containing protein n=1 Tax=Candida... [more]
A0A5J6PIS2_9GAMM6.540e-1141.05Lipase family protein n=1 Tax=Cellvibrio sp. KY-GH... [more]
UPI00068A26577.230e-1134.38lipase family protein n=1 Tax=Endozoicomonas numaz... [more]
A0A2D4ZEU1_9BACT2.780e-1039.36Lipase_3 domain-containing protein n=1 Tax=Verruco... [more]
A0A651HN81_9BACT8.620e-1037.89Lipase family protein n=1 Tax=Gemmatimonadales bac... [more]
A0A1B1NNE9_9VIBR1.150e-941.67Lipase_3 domain-containing protein n=3 Tax=Vibrio ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig997contigF-serratus_M_contig997:29493..29980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D8LDK4
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005615,GO:0044421
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size292
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.3892105-CDS-F-serratus_M_contig997:29492..297021622932794.3892105-CDS-F-serratus_M_contig997:29492..29702Fucus serratus maleCDSF-serratus_M_contig997 29493..29702 -
1690964478.9431713-CDS-F-serratus_M_contig997:29492..297021690964478.9431713-CDS-F-serratus_M_contig997:29492..29702Fucus serratus maleCDSF-serratus_M_contig997 29493..29702 -
1622932794.403903-CDS-F-serratus_M_contig997:29899..299801622932794.403903-CDS-F-serratus_M_contig997:29899..29980Fucus serratus maleCDSF-serratus_M_contig997 29900..29980 -
1690964478.9537036-CDS-F-serratus_M_contig997:29899..299801690964478.9537036-CDS-F-serratus_M_contig997:29899..29980Fucus serratus maleCDSF-serratus_M_contig997 29900..29980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig997.21248.1prot_F-serratus_M_contig997.21248.1Fucus serratus malepolypeptideF-serratus_M_contig997 29493..29980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig997.21248.1

>prot_F-serratus_M_contig997.21248.1 ID=prot_F-serratus_M_contig997.21248.1|Name=mRNA_F-serratus_M_contig997.21248.1|organism=Fucus serratus male|type=polypeptide|length=97bp
DWATNLNFVTRDAPVAWGLSVNCDVHKGFDDGVNTVWVGCGMRDVIKSLY
NEQGKKRKLFITGHSLGAALATVTAAHLAFEQNINITAIYTYGSPT*
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mRNA from alignment at F-serratus_M_contig997:29493..29980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig997.21248.1 ID=mRNA_F-serratus_M_contig997.21248.1|Name=mRNA_F-serratus_M_contig997.21248.1|organism=Fucus serratus male|type=mRNA|length=488bp|location=Sequence derived from alignment at F-serratus_M_contig997:29493..29980- (Fucus serratus male)
GACTGGGCCACTAACTTGAATTTTGTTACCAGAGACGCGCCGGTAGCGTG GGGCTTGAGCGTCAACTGCGACGTCCACAAGGTGACTAATCCCACCTACT TCATTGTATTAGCACGTCGAACTTCTTGCCTGGGTAGGTATGAGTGGATC CCTAGCGCGCGGGACTTACCGATGTGCTCCCACCCCAAGGTAGAAATGGA ATCGCCTTAAACACCTCCAGACTGTGCTACAAAATCGTCGAGACTCTCAC GCCTTTCGGCTTGTCGTGTTTGCGGCAGGGCTTCGACGACGGCGTGAACA CTGTTTGGGTGGGATGCGGTATGCGCGACGTGATAAAATCGCTCTACAAC GAGCAAGGAAAGAAGAGGAAGCTTTTCATCACGGGACACTCGCTTGGCGC TGCCCTCGCCACTGTTACCGCGGCTCATCTGGCCTTCGAGCAGAACATCA ATATCACCGCTATCTACACTTACGGAAGTCCTACGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig997:29493..29980-

>mRNA_F-serratus_M_contig997.21248.1 ID=mRNA_F-serratus_M_contig997.21248.1|Name=mRNA_F-serratus_M_contig997.21248.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig997:29493..29980- (Fucus serratus male)
GACTGGGCCACTAACTTGAATTTTGTTACCAGAGACGCGCCGGTAGCGTG
GGGCTTGAGCGTCAACTGCGACGTCCACAAGGACTGGGCCACTAACTTGA
ATTTTGTTACCAGAGACGCGCCGGTAGCGTGGGGCTTGAGCGTCAACTGC
GACGTCCACAAGGGCTTCGACGACGGCGTGAACACTGTTTGGGTGGGATG
CGGTATGCGCGACGTGATAAAATCGCTCTACAACGAGCAAGGAAAGAAGA
GGAAGCTTTTCATCACGGGACACTCGCTTGGCGCTGCCCTCGCCACTGTT
ACCGCGGCTCATCTGGCCTTCGAGCAGAACATCAATATCACCGCTATCTA
CACTTACGGAAGTCCTACGTGAGGCTTCGACGACGGCGTGAACACTGTTT
GGGTGGGATGCGGTATGCGCGACGTGATAAAATCGCTCTACAACGAGCAA
GGAAAGAAGAGGAAGCTTTTCATCACGGGACACTCGCTTGGCGCTGCCCT
CGCCACTGTTACCGCGGCTCATCTGGCCTTCGAGCAGAACATCAATATCA
CCGCTATCTACACTTACGGAAGTCCTACGTGA
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