mRNA_F-serratus_M_contig996.21246.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig996.21246.1
Unique NamemRNA_F-serratus_M_contig996.21246.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig996.21246.1 vs. uniprot
Match: D7G0J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J1_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 1.100e-105
Identity = 164/232 (70.69%), Postives = 187/232 (80.60%), Query Frame = 1 
Query:   16 RSAQGLDELSEVFPSPDDVVSEGEEASDDEEYGRRRVPKERWGTIDGCTPNERFFARMQGAKQGERMTTAVKTQAEKNKFDREVFQFLITPEMRRQLGGHP-AIQAIDFDRFAEKWNEDVGEMERNEVAGRLEVSGDVNKKINRKAPFDLQNWWTESKKDVNTARTVEQNKDCTSAMYRRNRINLSKRSTADRAAVGVTETGAQFSFPFVHVDLKTLPRPAPSAADEARYDE 708
            ++ + LD LSEVFP  D   SE E A+D EE  RR  PK RWGT+DGCTPNERFFARMQGA  GERMTTAV TQAEK+KFDREVFQFL++PE+R+Q+ GH    Q+I+FD FA KWNEDVGE+ERNEVAGRLEVSGD NKKINRKAPFDLQ+WWTES+K+VNTARTVEQNKD  SAMY +NR+ LS+ STA+RAAVG+T TG  FSFP VH    TLPRPAPSA     +DE
Sbjct:    7 QARKELDGLSEVFPLDDGDGSEDEGAADAEEDERRDAPKARWGTVDGCTPNERFFARMQGATPGERMTTAVITQAEKDKFDREVFQFLVSPEVRQQVAGHRRGTQSINFDAFAAKWNEDVGEIERNEVAGRLEVSGDANKKINRKAPFDLQSWWTESRKEVNTARTVEQNKDRLSAMYEKNRVRLSEPSTAERAAVGMTITGQTFSFPLVHNGRSTLPRPAPSATGGPEHDE 238
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig996.21246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0J1_ECTSI1.100e-10570.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig996contigF-serratus_M_contig996:194942..196146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size710
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932793.9668937-CDS-F-serratus_M_contig996:194941..1954761622932793.9668937-CDS-F-serratus_M_contig996:194941..195476Fucus serratus maleCDSF-serratus_M_contig996 194942..195476 -
1690964478.7495043-CDS-F-serratus_M_contig996:194941..1954761690964478.7495043-CDS-F-serratus_M_contig996:194941..195476Fucus serratus maleCDSF-serratus_M_contig996 194942..195476 -
1622932793.989943-CDS-F-serratus_M_contig996:195973..1961461622932793.989943-CDS-F-serratus_M_contig996:195973..196146Fucus serratus maleCDSF-serratus_M_contig996 195974..196146 -
1690964478.758804-CDS-F-serratus_M_contig996:195973..1961461690964478.758804-CDS-F-serratus_M_contig996:195973..196146Fucus serratus maleCDSF-serratus_M_contig996 195974..196146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig996.21246.1prot_F-serratus_M_contig996.21246.1Fucus serratus malepolypeptideF-serratus_M_contig996 194942..196146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig996.21246.1

>prot_F-serratus_M_contig996.21246.1 ID=prot_F-serratus_M_contig996.21246.1|Name=mRNA_F-serratus_M_contig996.21246.1|organism=Fucus serratus male|type=polypeptide|length=236bp
VAGSCRSAQGLDELSEVFPSPDDVVSEGEEASDDEEYGRRRVPKERWGTI
DGCTPNERFFARMQGAKQGERMTTAVKTQAEKNKFDREVFQFLITPEMRR
QLGGHPAIQAIDFDRFAEKWNEDVGEMERNEVAGRLEVSGDVNKKINRKA
PFDLQNWWTESKKDVNTARTVEQNKDCTSAMYRRNRINLSKRSTADRAAV
GVTETGAQFSFPFVHVDLKTLPRPAPSAADEARYDE
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mRNA from alignment at F-serratus_M_contig996:194942..196146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig996.21246.1 ID=mRNA_F-serratus_M_contig996.21246.1|Name=mRNA_F-serratus_M_contig996.21246.1|organism=Fucus serratus male|type=mRNA|length=1205bp|location=Sequence derived from alignment at F-serratus_M_contig996:194942..196146- (Fucus serratus male)
GTCGCGGGATCCTGTCGAAGCGCGCAAGGGCTGGATGAGCTTTCCGAGGT
CTTCCCTAGCCCCGACGACGTTGTATCGGAAGGCGAGGAGGCATCTGATG
ACGAAGAGTATGGACGCCGCCGTGTACCCAAGGAGAGGTGGGGAACTATC
GATGGATGCACCCCAAATGAGCGGTGAGTCTTTCAACTGAGAGCACTGTC
CATCTACTACTAGAGTAAATCTCTTCTACTCCACCCGCACAGTTTGGGTG
AAAAGTATCGAGTTCCCCCGGATCATTTTTTTCCTTCTTTTTTGCTGCGC
CTCCTTCTTCAGTTACACAGATTTTTCCCTCCCGATTGTTTTGGGGGGTA
TGGTCTAAAGTCGTCAAAGCAGGTGTTTGCTGGTAGATGCCGCTCAGTGG
TCCAAAATCATCTTACGAAGGAAGAAAGGGGGGTGTCGTGTTATTTTTCA
AAAGCACGCAATCTGTGGGATGTTCTCTCGAGGCTACTGCTTCATTCTAT
AGATCGCCCCCCTCACTCGAATGTTCCCCCAGCGCTGCGAACCAATCTAG
TGGCTCAAGTTTACGGCGGTCGGTTTTGCTTTTCTTCTGACCTCCATTAC
GCCGGATACACGAAACTACCCATTGCTGCACTTGATGATGGACTCGTTTC
GTGTGTTGGTCGGCTCGCAGCTTCTTTGCTCGGATGCAAGGTGCAAAACA
AGGAGAGCGCATGACTACTGCCGTCAAGACTCAGGCAGAAAAAAACAAGT
TCGATCGCGAAGTTTTTCAGTTCTTGATCACCCCGGAGATGAGGCGGCAA
CTTGGTGGTCATCCTGCGATCCAAGCCATCGACTTCGATCGCTTTGCGGA
GAAGTGGAACGAGGACGTCGGCGAAATGGAGAGAAACGAGGTGGCCGGTC
GCTTGGAAGTCAGCGGCGATGTCAACAAGAAGATCAACCGCAAGGCGCCT
TTCGACCTGCAGAACTGGTGGACCGAATCAAAGAAAGACGTCAACACCGC
GCGCACGGTGGAGCAGAACAAAGACTGCACATCAGCGATGTACCGAAGAA
ATCGCATCAATCTTTCAAAGCGAAGCACCGCGGACCGAGCAGCCGTCGGC
GTGACCGAAACGGGAGCCCAATTTTCCTTCCCATTCGTACACGTCGATCT
CAAAACTCTACCACGGCCCGCCCCTTCGGCCGCCGATGAAGCTCGATACG
ATGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig996:194942..196146-

>mRNA_F-serratus_M_contig996.21246.1 ID=mRNA_F-serratus_M_contig996.21246.1|Name=mRNA_F-serratus_M_contig996.21246.1|organism=Fucus serratus male|type=CDS|length=1416bp|location=Sequence derived from alignment at F-serratus_M_contig996:194942..196146- (Fucus serratus male)
GTCGCGGGATCCTGTCGAAGCGCGCAAGGGCTGGATGAGCTTTCCGAGGT
CTTCCCTAGCCCCGACGACGTTGTATCGGAAGGCGAGGAGGCATCTGATG
ACGAAGAGTATGGACGCCGCCGTGTACCCAAGGAGAGGTGGGGAACTATC
GATGGATGCACCCCAAATGAGCGGTCGCGGGATCCTGTCGAAGCGCGCAA
GGGCTGGATGAGCTTTCCGAGGTCTTCCCTAGCCCCGACGACGTTGTATC
GGAAGGCGAGGAGGCATCTGATGACGAAGAGTATGGACGCCGCCGTGTAC
CCAAGGAGAGGTGGGGAACTATCGATGGATGCACCCCAAATGAGCGCTTC
TTTGCTCGGATGCAAGGTGCAAAACAAGGAGAGCGCATGACTACTGCCGT
CAAGACTCAGGCAGAAAAAAACAAGTTCGATCGCGAAGTTTTTCAGTTCT
TGATCACCCCGGAGATGAGGCGGCAACTTGGTGGTCATCCTGCGATCCAA
GCCATCGACTTCGATCGCTTTGCGGAGAAGTGGAACGAGGACGTCGGCGA
AATGGAGAGAAACGAGGTGGCCGGTCGCTTGGAAGTCAGCGGCGATGTCA
ACAAGAAGATCAACCGCAAGGCGCCTTTCGACCTGCAGAACTGGTGGACC
GAATCAAAGAAAGACGTCAACACCGCGCGCACGGTGGAGCAGAACAAAGA
CTGCACATCAGCGATGTACCGAAGAAATCGCATCAATCTTTCAAAGCGAA
GCACCGCGGACCGAGCAGCCGTCGGCGTGACCGAAACGGGAGCCCAATTT
TCCTTCCCATTCGTACACGTCGATCTCAAAACTCTACCACGGCCCGCCCC
TTCGGCCGCCGATGAAGCTCGATACGATGAGCTTCTTTGCTCGGATGCAA
GGTGCAAAACAAGGAGAGCGCATGACTACTGCCGTCAAGACTCAGGCAGA
AAAAAACAAGTTCGATCGCGAAGTTTTTCAGTTCTTGATCACCCCGGAGA
TGAGGCGGCAACTTGGTGGTCATCCTGCGATCCAAGCCATCGACTTCGAT
CGCTTTGCGGAGAAGTGGAACGAGGACGTCGGCGAAATGGAGAGAAACGA
GGTGGCCGGTCGCTTGGAAGTCAGCGGCGATGTCAACAAGAAGATCAACC
GCAAGGCGCCTTTCGACCTGCAGAACTGGTGGACCGAATCAAAGAAAGAC
GTCAACACCGCGCGCACGGTGGAGCAGAACAAAGACTGCACATCAGCGAT
GTACCGAAGAAATCGCATCAATCTTTCAAAGCGAAGCACCGCGGACCGAG
CAGCCGTCGGCGTGACCGAAACGGGAGCCCAATTTTCCTTCCCATTCGTA
CACGTCGATCTCAAAACTCTACCACGGCCCGCCCCTTCGGCCGCCGATGA
AGCTCGATACGATGAG
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