mRNA_F-serratus_M_contig996.21245.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig996.21245.1
Unique NamemRNA_F-serratus_M_contig996.21245.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig996.21245.1 vs. uniprot
Match: UPI00103F0D66 (uncharacterized protein LOC114362197 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F0D66)

HSP 1 Score: 61.6 bits (148), Expect = 3.650e-9
Identity = 33/120 (27.50%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   22 VDPDELHKAQQAWVSLVTSCKRVAFDIVNAEESANEAWTKLVQHHQAIGLKERRRLTIDFYMTKMELGDHSPEFLLRVDQMVKELTQVDWPVDPKDIDIVILSGLTPQYDAEVRMLESSS 381
             D D   K  +A   +  S        +   +SA+EAWT L + ++  GL  R  L    + TK+        +L ++ ++  +L++++ P+D + + ++ILSGLT  YD  +  +E SS
Sbjct:   44 ADEDNKKKDDKALARIALSVAPTIIPHIRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163          
BLAST of mRNA_F-serratus_M_contig996.21245.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 62.0 bits (149), Expect = 1.120e-8
Identity = 33/120 (27.50%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   22 VDPDELHKAQQAWVSLVTSCKRVAFDIVNAEESANEAWTKLVQHHQAIGLKERRRLTIDFYMTKMELGDHSPEFLLRVDQMVKELTQVDWPVDPKDIDIVILSGLTPQYDAEVRMLESSS 381
             D D   K  +A   +  S        +   +SA+EAWT L + ++  GL  R  L    + TK+        +L ++ ++  +L++++ P+D + + ++ILSGLT  YD  +  +E SS
Sbjct:   44 ADEDNKKKDDKALARIALSVAPTVIPHIRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163          
BLAST of mRNA_F-serratus_M_contig996.21245.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 57.4 bits (137), Expect = 8.200e-8
Identity = 28/113 (24.78%), Postives = 56/113 (49.56%), Query Frame = 1
Query:   43 KAQQAWVSLVTSCKRVAFDIVNAEESANEAWTKLVQHHQAIGLKERRRLTIDFYMTKMELGDHSPEFLLRVDQMVKELTQVDWPVDPKDIDIVILSGLTPQYDAEVRMLESSS 381
            K  +A   +  S        +   +SA+EAW  L + ++  GL  R  L    + TK+        +L ++ ++  +L +++ P+D + + +++LSGLT  YD  +  +E S+
Sbjct:   23 KVDKALARIALSLTPAVIPYIRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 135          
BLAST of mRNA_F-serratus_M_contig996.21245.1 vs. uniprot
Match: UPI001F8D56D1 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8D56D1)

HSP 1 Score: 57.4 bits (137), Expect = 5.600e-7
Identity = 29/112 (25.89%), Postives = 58/112 (51.79%), Query Frame = 1
Query:   43 KAQQAWVSLVTSCKRVAFDIVNAEESANEAWTKLVQHHQAIGLKERRRLTIDFYMTKMELGDHSPEFLLRVDQMVKELTQVDWPVDPKDIDIVILSGLTPQYDAEVRMLESS 378
            K  +A   +  S +      +   +SA EAW  L + ++  GL  +  L    + TK+   +    +L ++ ++  +L++++ P+D + I ++ILSGLT  YD  +  +E+S
Sbjct:   49 KGNKALARIALSVQPSVIPYIRTAKSAYEAWNNLKKTYEGKGLCRKLGLLRSLFGTKLADSNSMDGYLNKIKEVAHQLSEIESPLDDEFIAVIILSGLTSDYDPLIMAIENS 160          
BLAST of mRNA_F-serratus_M_contig996.21245.1 vs. uniprot
Match: A0A2H1WMK4_SPOFR (SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WMK4_SPOFR)

HSP 1 Score: 57.0 bits (136), Expect = 5.760e-7
Identity = 28/113 (24.78%), Postives = 56/113 (49.56%), Query Frame = 1
Query:   43 KAQQAWVSLVTSCKRVAFDIVNAEESANEAWTKLVQHHQAIGLKERRRLTIDFYMTKMELGDHSPEFLLRVDQMVKELTQVDWPVDPKDIDIVILSGLTPQYDAEVRMLESSS 381
            K  +A   +  S        +   +SA+EAW  L + ++  GL  R  L    + TK+        +L ++ ++  +L +++ P+D + + +++LSGLT  YD  +  +E S+
Sbjct:   54 KVDKALARIALSVTPAVIPYIRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFNTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 166          
BLAST of mRNA_F-serratus_M_contig996.21245.1 vs. uniprot
Match: UPI00193DC084 (uncharacterized protein LOC105196674 isoform X1 n=3 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193DC084)

HSP 1 Score: 55.5 bits (132), Expect = 2.720e-6
Identity = 35/126 (27.78%), Postives = 62/126 (49.21%), Query Frame = 1
Query:    4 DFDRGSVDPDELHKAQQAWVSLVTSCKRVAFDIVNAEESANEAWTKLVQHHQAIGLKERRRLTIDFYMTKMELGDHSPEFLLRVDQMVKELTQVDWPVDPKDIDIVILSGLTPQYDAEVRMLESSS 381
            D D  SV  +   K Q+A   +    K  A+  V + E+A EAW  L + ++  GL  R  L       K++   +   ++  +    ++L  ++ P+D + + +++LSGLT  YD  V  LES++
Sbjct:   46 DEDTSSV-AERTRKDQKALAKICLMVKPCAYPYVRSAENAREAWLNLQKAYEDKGLSRRLSLLRTLAGMKLQNFKNMEIYVNEIMSASQKLADINAPLDDEFLAVIMLSGLTEDYDPMVMALESAN 170          
BLAST of mRNA_F-serratus_M_contig996.21245.1 vs. uniprot
Match: A0A2A4K3A2_HELVI (CCHC-type domain-containing protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4K3A2_HELVI)

HSP 1 Score: 54.3 bits (129), Expect = 6.350e-6
Identity = 31/113 (27.43%), Postives = 58/113 (51.33%), Query Frame = 1
Query:   43 KAQQAWVSLVTSCKRVAFDIVNAEESANEAWTKLVQHHQAIGLKERRRLTIDFYMTKMELGDHSPEFLLRVDQMVKELTQVDWPVDPKDIDIVILSGLTPQYDAEVRMLESSS 381
            K Q+A   +  S    AF  V   ++A EAW  L +  +  GL  R  L    + TK+        +L ++  + ++L+ + +P+D + + +++LSGLT  +D  +  LE+S+
Sbjct:   54 KNQKALAKICLSVHTSAFPHVRNAKTAFEAWHNLQRAFEDKGLCRRLSLLRSLFGTKLGENTSMEGYLSKITNLSQQLSDIGFPLDDEFVAVLMLSGLTSDFDPLIMALENSN 166          
BLAST of mRNA_F-serratus_M_contig996.21245.1 vs. uniprot
Match: A0A0J7K5G8_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K5G8_LASNI)

HSP 1 Score: 52.4 bits (124), Expect = 3.070e-5
Identity = 31/121 (25.62%), Postives = 61/121 (50.41%), Query Frame = 1
Query:   19 SVDPDELHKAQQAWVSLVTSCKRVAFDIVNAEESANEAWTKLVQHHQAIGLKERRRLTIDFYMTKMELGDHSPEFLLRVDQMVKELTQVDWPVDPKDIDIVILSGLTPQYDAEVRMLESSS 381
            S + ++  K Q+A   +    K  A+  V + ESA EAW  L + ++  GL  R  L        ++   +   ++  +  + ++L  ++ P+D + I +++LSGLT  Y+  +  LES++
Sbjct:   48 STESEKNRKEQKALAKICLMVKPCAYAQVRSAESAREAWLNLQKAYEDKGLSRRLALLRTLAGMILQNFRNMESYVNEIMSVSQKLADMNAPLDDEFIAVIMLSGLTEDYNPMIMALESAN 168          
BLAST of mRNA_F-serratus_M_contig996.21245.1 vs. uniprot
Match: A0A6J2YVB7_SITOR (uncharacterized protein LOC115890636 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YVB7_SITOR)

HSP 1 Score: 50.8 bits (120), Expect = 4.670e-5
Identity = 30/113 (26.55%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   49 QQAWVSLVTSCKRVAFDIVNAEESANEAWTKLVQHHQAIGLKERRRLTIDFYMTKMELGDHSP--EFLLRVDQMVKELTQVDWPVDPKDIDIVILSGLTPQYDAEVRMLESSS 381
            ++A   +    K +A+  V   ++A EAW  L + ++  GL   RRL++   + ++ L ++S    ++     + ++L  +  PVD + + +++LSGLT +YD  V  +E+S+
Sbjct:   33 EKALAKICLMIKPIAYTHVRLAKTAKEAWDNLQKAYEDQGLS--RRLSLIRRLVRIRLENYSTMEAYVNETLSIAQKLADMAQPVDDEFLGVIMLSGLTSEYDPMVMAIENSN 143          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig996.21245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI00103F0D663.650e-927.50uncharacterized protein LOC114362197 n=1 Tax=Ostri... [more]
UPI00103FEA551.120e-827.50uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
A0A2H1VB05_SPOFR8.200e-824.78SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
UPI001F8D56D15.600e-725.89Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A2H1WMK4_SPOFR5.760e-724.78SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=... [more]
UPI00193DC0842.720e-627.78uncharacterized protein LOC105196674 isoform X1 n=... [more]
A0A2A4K3A2_HELVI6.350e-627.43CCHC-type domain-containing protein n=1 Tax=Heliot... [more]
A0A0J7K5G8_LASNI3.070e-525.62Retrovirus-related pol polyprotein from transposon... [more]
A0A6J2YVB7_SITOR4.670e-526.55uncharacterized protein LOC115890636 n=1 Tax=Sitop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig996contigF-serratus_M_contig996:114441..114839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932793.9151483-CDS-F-serratus_M_contig996:114440..1148391622932793.9151483-CDS-F-serratus_M_contig996:114440..114839Fucus serratus maleCDSF-serratus_M_contig996 114441..114839 +
1690964478.7361364-CDS-F-serratus_M_contig996:114440..1148391690964478.7361364-CDS-F-serratus_M_contig996:114440..114839Fucus serratus maleCDSF-serratus_M_contig996 114441..114839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig996.21245.1prot_F-serratus_M_contig996.21245.1Fucus serratus malepolypeptideF-serratus_M_contig996 114441..114839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig996.21245.1

>prot_F-serratus_M_contig996.21245.1 ID=prot_F-serratus_M_contig996.21245.1|Name=mRNA_F-serratus_M_contig996.21245.1|organism=Fucus serratus male|type=polypeptide|length=133bp
DDFDRGSVDPDELHKAQQAWVSLVTSCKRVAFDIVNAEESANEAWTKLVQ
HHQAIGLKERRRLTIDFYMTKMELGDHSPEFLLRVDQMVKELTQVDWPVD
PKDIDIVILSGLTPQYDAEVRMLESSSDWSTR*
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mRNA from alignment at F-serratus_M_contig996:114441..114839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig996.21245.1 ID=mRNA_F-serratus_M_contig996.21245.1|Name=mRNA_F-serratus_M_contig996.21245.1|organism=Fucus serratus male|type=mRNA|length=399bp|location=Sequence derived from alignment at F-serratus_M_contig996:114441..114839+ (Fucus serratus male)
GACGATTTCGATCGCGGCAGCGTCGACCCGGACGAATTACACAAAGCGCA ACAAGCTTGGGTTTCACTGGTCACTTCATGCAAGAGAGTCGCGTTTGATA TCGTGAATGCGGAAGAGTCAGCCAACGAGGCATGGACCAAACTCGTACAG CACCATCAGGCCATTGGGCTCAAGGAGCGCCGACGTCTCACCATTGATTT TTACATGACAAAGATGGAGCTCGGAGATCATTCGCCGGAGTTCCTACTTC GCGTGGATCAAATGGTGAAGGAACTAACCCAAGTCGACTGGCCCGTGGAT CCAAAGGACATCGACATCGTCATCCTGAGCGGACTTACGCCGCAGTACGA CGCCGAAGTTCGTATGCTAGAGAGCTCATCGGATTGGTCCACACGATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig996:114441..114839+

>mRNA_F-serratus_M_contig996.21245.1 ID=mRNA_F-serratus_M_contig996.21245.1|Name=mRNA_F-serratus_M_contig996.21245.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig996:114441..114839+ (Fucus serratus male)
GACGATTTCGATCGCGGCAGCGTCGACCCGGACGAATTACACAAAGCGCA
ACAAGCTTGGGTTTCACTGGTCACTTCATGCAAGAGAGTCGCGTTTGATA
TCGTGAATGCGGAAGAGTCAGCCAACGAGGCATGGACCAAACTCGTACAG
CACCATCAGGCCATTGGGCTCAAGGAGCGCCGACGTCTCACCATTGATTT
TTACATGACAAAGATGGAGCTCGGAGATCATTCGCCGGAGTTCCTACTTC
GCGTGGATCAAATGGTGAAGGAACTAACCCAAGTCGACTGGCCCGTGGAT
CCAAAGGACATCGACATCGTCATCCTGAGCGGACTTACGCCGCAGTACGA
CGCCGAAGTTCGTATGCTAGAGAGCTCATCGGATTGGTCCACACGATAAG
ACGATTTCGATCGCGGCAGCGTCGACCCGGACGAATTACACAAAGCGCAA
CAAGCTTGGGTTTCACTGGTCACTTCATGCAAGAGAGTCGCGTTTGATAT
CGTGAATGCGGAAGAGTCAGCCAACGAGGCATGGACCAAACTCGTACAGC
ACCATCAGGCCATTGGGCTCAAGGAGCGCCGACGTCTCACCATTGATTTT
TACATGACAAAGATGGAGCTCGGAGATCATTCGCCGGAGTTCCTACTTCG
CGTGGATCAAATGGTGAAGGAACTAACCCAAGTCGACTGGCCCGTGGATC
CAAAGGACATCGACATCGTCATCCTGAGCGGACTTACGCCGCAGTACGAC
GCCGAAGTTCGTATGCTAGAGAGCTCATCGGATTGGTCCACACGATAA
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