mRNA_F-serratus_M_contig995.21241.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig995.21241.1
Unique NamemRNA_F-serratus_M_contig995.21241.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.730e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI KLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 246 bits (627), Expect = 6.070e-82
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI KLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 245 bits (626), Expect = 7.050e-82
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLI KLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 246 bits (627), Expect = 7.940e-82
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLI KLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 247 bits (630), Expect = 2.010e-81
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLI KLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
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BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 4.080e-81
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI KLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 243 bits (620), Expect = 5.800e-81
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI KLPFQRL+REIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Match: A0A6J0UZS0_9SAUR (Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A6J0UZS0_9SAUR)

HSP 1 Score: 243 bits (619), Expect = 8.230e-81
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI KLPFQRLVREIAQDFKSDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Match: E1ZFV1_CHLVA (Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1ZFV1_CHLVA)

HSP 1 Score: 242 bits (618), Expect = 1.170e-80
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTELLI KLPFQRLVREIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Match: A0A183C227_GLOPA (Histone H3 n=2 Tax=Tylenchoidea TaxID=33284 RepID=A0A183C227_GLOPA)

HSP 1 Score: 242 bits (618), Expect = 1.170e-80
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI KLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERT 136
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig995.21241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA1.730e-8298.53Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A6V1P6C6_HETAK6.070e-8297.79Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO7.050e-8297.79Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA7.940e-8297.79Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC2.010e-8198.53Histone domain-containing protein n=8 Tax=Bacillar... [more]
D7G4I9_ECTSI4.080e-8197.79Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A7RJG4_NEMVE5.800e-8196.32Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]
A0A6J0UZS0_9SAUR8.230e-8196.32Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
E1ZFV1_CHLVA1.170e-8096.32Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]
A0A183C227_GLOPA1.170e-8096.32Histone H3 n=2 Tax=Tylenchoidea TaxID=33284 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig995contigF-serratus_M_contig995:117266..117676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.6
Seed ortholog evalue2.6e-65
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size411
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932793.1999166-CDS-F-serratus_M_contig995:117265..1176761622932793.1999166-CDS-F-serratus_M_contig995:117265..117676Fucus serratus maleCDSF-serratus_M_contig995 117266..117676 +
1690964478.3980494-CDS-F-serratus_M_contig995:117265..1176761690964478.3980494-CDS-F-serratus_M_contig995:117265..117676Fucus serratus maleCDSF-serratus_M_contig995 117266..117676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig995.21241.1prot_F-serratus_M_contig995.21241.1Fucus serratus malepolypeptideF-serratus_M_contig995 117266..117676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig995.21241.1

>prot_F-serratus_M_contig995.21241.1 ID=prot_F-serratus_M_contig995.21241.1|Name=mRNA_F-serratus_M_contig995.21241.1|organism=Fucus serratus male|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLICKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at F-serratus_M_contig995:117266..117676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig995.21241.1 ID=mRNA_F-serratus_M_contig995.21241.1|Name=mRNA_F-serratus_M_contig995.21241.1|organism=Fucus serratus male|type=mRNA|length=411bp|location=Sequence derived from alignment at F-serratus_M_contig995:117266..117676+ (Fucus serratus male)
ATGGCTCGCACCAAGCAAACCGCTCGTAAGTCTACCGGAGGCAAGGCCCC
ACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGCGCCCGCTACCG
GTGGTGTGAAGAAGCCTCATCGCTACAGGCCAGGAACAGTCGCCCTGCGC
GAGATCCGCCGTTATCAGAAGTCTACCGAACTTTTGATCTGTAAGCTACC
TTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAAGAGTGATCTGC
GCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCGCCGAGGCCTAT
CTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATCCACGCGAAGCG
CGTTACCATCATGCCTAAGGATATCCAGCTGGCTAGGCGTATCCGCGGAG
AGCGCTCGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig995:117266..117676+

>mRNA_F-serratus_M_contig995.21241.1 ID=mRNA_F-serratus_M_contig995.21241.1|Name=mRNA_F-serratus_M_contig995.21241.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig995:117266..117676+ (Fucus serratus male)
ATGGCTCGCACCAAGCAAACCGCTCGTAAGTCTACCGGAGGCAAGGCCCC
ACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGCGCCCGCTACCG
GTGGTGTGAAGAAGCCTCATCGCTACAGGCCAGGAACAGTCGCCCTGCGC
GAGATCCGCCGTTATCAGAAGTCTACCGAACTTTTGATCTGTAAGCTACC
TTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAAGAGTGATCTGC
GCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCGCCGAGGCCTAT
CTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATCCACGCGAAGCG
CGTTACCATCATGCCTAAGGATATCCAGCTGGCTAGGCGTATCCGCGGAG
AGCGCTCGTGAATGGCTCGCACCAAGCAAACCGCTCGTAAGTCTACCGGA
GGCAAGGCCCCACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGC
GCCCGCTACCGGTGGTGTGAAGAAGCCTCATCGCTACAGGCCAGGAACAG
TCGCCCTGCGCGAGATCCGCCGTTATCAGAAGTCTACCGAACTTTTGATC
TGTAAGCTACCTTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAA
GAGTGATCTGCGCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCG
CCGAGGCCTATCTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATC
CACGCGAAGCGCGTTACCATCATGCCTAAGGATATCCAGCTGGCTAGGCG
TATCCGCGGAGAGCGCTCGTGA
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