mRNA_F-serratus_M_contig995.21238.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig995.21238.1
Unique NamemRNA_F-serratus_M_contig995.21238.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A672K8D0_SINGR (Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A672K8D0_SINGR)

HSP 1 Score: 243 bits (621), Expect = 4.360e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138
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BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A8C1ET08_CYPCA (Histone H3 n=4 Tax=Euteleostomi TaxID=117571 RepID=A0A8C1ET08_CYPCA)

HSP 1 Score: 243 bits (621), Expect = 4.360e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138
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BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A3P6TB85_LITSI (Histone domain-containing protein n=2 Tax=Bilateria TaxID=33213 RepID=A0A3P6TB85_LITSI)

HSP 1 Score: 244 bits (623), Expect = 4.370e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   24 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 159
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BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A8B9F8D8_9PSIT (Histone H3 n=2 Tax=Amniota TaxID=32524 RepID=A0A8B9F8D8_9PSIT)

HSP 1 Score: 243 bits (621), Expect = 4.510e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
[Close]
BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A8C7F568_ONCKI (Histone H3 n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7F568_ONCKI)

HSP 1 Score: 243 bits (621), Expect = 4.510e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A672K8D0_SINGR4.360e-8196.32Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID... [more]
A0A8C1ET08_CYPCA4.360e-8196.32Histone H3 n=4 Tax=Euteleostomi TaxID=117571 RepID... [more]
A0A3P6TB85_LITSI4.370e-8197.06Histone domain-containing protein n=2 Tax=Bilateri... [more]
A0A8B9F8D8_9PSIT4.510e-8196.32Histone H3 n=2 Tax=Amniota TaxID=32524 RepID=A0A8B... [more]
A0A8C7F568_ONCKI4.510e-8196.32Histone H3 n=2 Tax=Oncorhynchus TaxID=8016 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig995contigF-serratus_M_contig995:65192..65602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue6.9e-66
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
Ec32 ortholog descriptionHistone H3
Ec32 orthologEc-26_005890.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size411
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932793.098864-CDS-F-serratus_M_contig995:65191..656021622932793.098864-CDS-F-serratus_M_contig995:65191..65602Fucus serratus maleCDSF-serratus_M_contig995 65192..65602 +
1690964478.3679407-CDS-F-serratus_M_contig995:65191..656021690964478.3679407-CDS-F-serratus_M_contig995:65191..65602Fucus serratus maleCDSF-serratus_M_contig995 65192..65602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig995.21238.1prot_F-serratus_M_contig995.21238.1Fucus serratus malepolypeptideF-serratus_M_contig995 65192..65602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig995.21238.1

>prot_F-serratus_M_contig995.21238.1 ID=prot_F-serratus_M_contig995.21238.1|Name=mRNA_F-serratus_M_contig995.21238.1|organism=Fucus serratus male|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at F-serratus_M_contig995:65192..65602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig995.21238.1 ID=mRNA_F-serratus_M_contig995.21238.1|Name=mRNA_F-serratus_M_contig995.21238.1|organism=Fucus serratus male|type=mRNA|length=411bp|location=Sequence derived from alignment at F-serratus_M_contig995:65192..65602+ (Fucus serratus male)
ATGGCTCGCACCAAGCAAACCGCTCGTAAGTCTACCGGGGGCAAGGCCCC
ACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGCGCCTGCTACCG
GTGGTGTGAAGAAGCCTCACCGCTACAGGCCGGGAACAGTCGCCCTGCGC
GAGATCCGCCGTTACCAGAAGTCTACCGAACTTTTGATCCGTAAGCTGCC
TTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAAGAGTGATCTGC
GCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCGCCGAGGCCTAC
CTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATCCACGCGAAGCG
CGTTACCATCATGCCCAAGGATATCCAGCTGGCTAGGCGCATCCGCGGAG
AGCGCTCGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig995:65192..65602+

>mRNA_F-serratus_M_contig995.21238.1 ID=mRNA_F-serratus_M_contig995.21238.1|Name=mRNA_F-serratus_M_contig995.21238.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig995:65192..65602+ (Fucus serratus male)
ATGGCTCGCACCAAGCAAACCGCTCGTAAGTCTACCGGGGGCAAGGCCCC
ACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGCGCCTGCTACCG
GTGGTGTGAAGAAGCCTCACCGCTACAGGCCGGGAACAGTCGCCCTGCGC
GAGATCCGCCGTTACCAGAAGTCTACCGAACTTTTGATCCGTAAGCTGCC
TTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAAGAGTGATCTGC
GCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCGCCGAGGCCTAC
CTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATCCACGCGAAGCG
CGTTACCATCATGCCCAAGGATATCCAGCTGGCTAGGCGCATCCGCGGAG
AGCGCTCGTGAATGGCTCGCACCAAGCAAACCGCTCGTAAGTCTACCGGG
GGCAAGGCCCCACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGC
GCCTGCTACCGGTGGTGTGAAGAAGCCTCACCGCTACAGGCCGGGAACAG
TCGCCCTGCGCGAGATCCGCCGTTACCAGAAGTCTACCGAACTTTTGATC
CGTAAGCTGCCTTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAA
GAGTGATCTGCGCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCG
CCGAGGCCTACCTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATC
CACGCGAAGCGCGTTACCATCATGCCCAAGGATATCCAGCTGGCTAGGCG
CATCCGCGGAGAGCGCTCGTGA
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