mRNA_F-serratus_M_contig995.21238.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig995.21238.1
Unique Name	mRNA_F-serratus_M_contig995.21238.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

[Close]

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: H32_HUMAN (Histone H3.2 n=21972 Tax=cellular organisms TaxID=131567 RepID=H32_HUMAN)

HSP 1 Score: 243 bits (621), Expect = 4.080e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1

Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A7R9BXI0_9CRUS (Histone H3 n=2 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BXI0_9CRUS)

HSP 1 Score: 243 bits (621), Expect = 4.080e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1

Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVMALQEASEAYLVSLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A7L0ZNQ9_9PASS (Histone H3 (Fragment) n=6 Tax=Bilateria TaxID=33213 RepID=A0A7L0ZNQ9_9PASS)

HSP 1 Score: 243 bits (621), Expect = 4.080e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1

Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQNSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: W7UA52_9STRA (Histone H3 n=3 Tax=cellular organisms TaxID=131567 RepID=W7UA52_9STRA)

HSP 1 Score: 243 bits (621), Expect = 4.080e-81
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 1

Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEA EAYLVGLFEDTNL AIHAKRVTIMPKD+QLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 136

[Close]

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: H2Y963_CIOSA (Histone H3 n=4 Tax=Chordata TaxID=7711 RepID=H2Y963_CIOSA)

HSP 1 Score: 243 bits (621), Expect = 4.220e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1

Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137

[Close]

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A674HWZ8_TERCA (Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A674HWZ8_TERCA)

HSP 1 Score: 243 bits (621), Expect = 4.220e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1

Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137

[Close]

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A8C1ANM6_CYPCA (Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A8C1ANM6_CYPCA)

HSP 1 Score: 243 bits (621), Expect = 4.360e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1

Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A195CL88_9HYME (Histone H3 (Fragment) n=11 Tax=Bilateria TaxID=33213 RepID=A0A195CL88_9HYME)

HSP 1 Score: 243 bits (621), Expect = 4.360e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1

Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138

[Close]

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A8C5WQ19_LATLA (Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A8C5WQ19_LATLA)

HSP 1 Score: 243 bits (621), Expect = 4.360e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1

Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138

[Close]

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Match: A0A224XSI9_9HEMI (Histone H3 (Fragment) n=2 Tax=Neoptera TaxID=33340 RepID=A0A224XSI9_9HEMI)

HSP 1 Score: 243 bits (621), Expect = 4.360e-81
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 1

Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig995.21238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
H32_HUMAN	4.080e-81	96.32	Histone H3.2 n=21972 Tax=cellular organisms TaxID=...	[more]
A0A7R9BXI0_9CRUS	4.080e-81	96.32	Histone H3 n=2 Tax=Notodromas monacha TaxID=399045...	[more]
A0A7L0ZNQ9_9PASS	4.080e-81	96.32	Histone H3 (Fragment) n=6 Tax=Bilateria TaxID=3321...	[more]
W7UA52_9STRA	4.080e-81	97.06	Histone H3 n=3 Tax=cellular organisms TaxID=131567...	[more]
H2Y963_CIOSA	4.220e-81	96.32	Histone H3 n=4 Tax=Chordata TaxID=7711 RepID=H2Y96...	[more]
A0A674HWZ8_TERCA	4.220e-81	96.32	Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A...	[more]
A0A8C1ANM6_CYPCA	4.360e-81	96.32	Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID...	[more]
A0A195CL88_9HYME	4.360e-81	96.32	Histone H3 (Fragment) n=11 Tax=Bilateria TaxID=332...	[more]
A0A8C5WQ19_LATLA	4.360e-81	96.32	Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID...	[more]
A0A224XSI9_9HEMI	4.360e-81	96.32	Histone H3 (Fragment) n=2 Tax=Neoptera TaxID=33340...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig995	contig	F-serratus_M_contig995:65192..65602 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	256.5
Seed ortholog evalue	6.9e-66
Seed eggNOG ortholog	2880.D7FWI7
KEGG ko	ko:K11253
KEGG Pathway	ko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting category	other localisation
GOs	GO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG1745@2759
Ec32 ortholog description	Histone H3
Ec32 ortholog	Ec-26_005890.1
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147
Exons	1
Model size	411
Cds size	411
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932793.098864-CDS-F-serratus_M_contig995:65191..65602	1622932793.098864-CDS-F-serratus_M_contig995:65191..65602	Fucus serratus male	CDS	F-serratus_M_contig995 65192..65602 +
1690964478.3679407-CDS-F-serratus_M_contig995:65191..65602	1690964478.3679407-CDS-F-serratus_M_contig995:65191..65602	Fucus serratus male	CDS	F-serratus_M_contig995 65192..65602 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig995.21238.1	prot_F-serratus_M_contig995.21238.1	Fucus serratus male	polypeptide	F-serratus_M_contig995 65192..65602 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig995:65192..65602+
coding sequence from alignment at F-serratus_M_contig995:65192..65602+

protein sequence of mRNA_F-serratus_M_contig995.21238.1

>prot_F-serratus_M_contig995.21238.1 ID=prot_F-serratus_M_contig995.21238.1|Name=mRNA_F-serratus_M_contig995.21238.1|organism=Fucus serratus male|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*

mRNA from alignment at F-serratus_M_contig995:65192..65602+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig995.21238.1 ID=mRNA_F-serratus_M_contig995.21238.1|Name=mRNA_F-serratus_M_contig995.21238.1|organism=Fucus serratus male|type=mRNA|length=411bp|location=Sequence derived from alignment at F-serratus_M_contig995:65192..65602+ (Fucus serratus male)
ATGGCTCGCACCAAGCAAACCGCTCGTAAGTCTACCGGGGGCAAGGCCCC
ACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGCGCCTGCTACCG
GTGGTGTGAAGAAGCCTCACCGCTACAGGCCGGGAACAGTCGCCCTGCGC
GAGATCCGCCGTTACCAGAAGTCTACCGAACTTTTGATCCGTAAGCTGCC
TTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAAGAGTGATCTGC
GCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCGCCGAGGCCTAC
CTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATCCACGCGAAGCG
CGTTACCATCATGCCCAAGGATATCCAGCTGGCTAGGCGCATCCGCGGAG
AGCGCTCGTGA

Coding sequence (CDS) from alignment at F-serratus_M_contig995:65192..65602+

>mRNA_F-serratus_M_contig995.21238.1 ID=mRNA_F-serratus_M_contig995.21238.1|Name=mRNA_F-serratus_M_contig995.21238.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig995:65192..65602+ (Fucus serratus male)
ATGGCTCGCACCAAGCAAACCGCTCGTAAGTCTACCGGGGGCAAGGCCCC
ACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGCGCCTGCTACCG
GTGGTGTGAAGAAGCCTCACCGCTACAGGCCGGGAACAGTCGCCCTGCGC
GAGATCCGCCGTTACCAGAAGTCTACCGAACTTTTGATCCGTAAGCTGCC
TTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAAGAGTGATCTGC
GCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCGCCGAGGCCTAC
CTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATCCACGCGAAGCG
CGTTACCATCATGCCCAAGGATATCCAGCTGGCTAGGCGCATCCGCGGAG
AGCGCTCGTGAATGGCTCGCACCAAGCAAACCGCTCGTAAGTCTACCGGG
GGCAAGGCCCCACGCAAGCAGTTGGCCACAAAGGCTGCCCGCAAATCCGC
GCCTGCTACCGGTGGTGTGAAGAAGCCTCACCGCTACAGGCCGGGAACAG
TCGCCCTGCGCGAGATCCGCCGTTACCAGAAGTCTACCGAACTTTTGATC
CGTAAGCTGCCTTTCCAGCGCCTTGTGCGCGAGATCGCCCAGGATTTCAA
GAGTGATCTGCGCTTCCAGGGCTCTGCCGTTCTGGCCCTTCAGGAGGCCG
CCGAGGCCTACCTTGTAGGTTTGTTCGAAGACACCAACCTGTGCGCGATC
CACGCGAAGCGCGTTACCATCATGCCCAAGGATATCCAGCTGGCTAGGCG
CATCCGCGGAGAGCGCTCGTGA