mRNA_F-serratus_M_contig995.21236.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig995.21236.1
Unique NamemRNA_F-serratus_M_contig995.21236.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: A0A2D4BWE3_PYTIN (E1 ubiquitin-activating enzyme n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWE3_PYTIN)

HSP 1 Score: 59.7 bits (143), Expect = 3.640e-7
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKP 225
            +++EAIK LKERNGSS QAI KH++A  +  NF  H +  AL+  VE+ K         +QVK+SYKL+   KKP
Sbjct: 1424 LIVEAIKELKERNGSSRQAIAKHVSAKKA--NFASHFLNKALRTAVENEKL--------VQVKASYKLAPSLKKP 1488
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: A0A6A3F8I3_9STRA (H15 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F8I3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.260e-7
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKP 225
            ++++AIK LKERNGSS QAI K +   N   N+  H +  AL+  V++GKF        +QVK SYKLS E +KP
Sbjct:   87 LIVDAIKELKERNGSSRQAIAKVVE--NKKDNYASHHLNKALRTAVDAGKF--------IQVKGSYKLSPELRKP 151
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: A0A7S1VXP0_9STRA (Hypothetical protein (Fragment) n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXP0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.910e-7
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKPP 228
            ++ E + ALK+R GSS+QAI K +      +    H MR+ALK+GVE+G       +P   VK+SYKLS EAKKPP
Sbjct:   28 LIKECLLALKDRTGSSLQAINKWLEKEKK-VTIKKHVMRAALKRGVETG-----ILIP---VKASYKLSPEAKKPP 94
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: A0A7S2EXL4_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXL4_TRICV)

HSP 1 Score: 56.2 bits (134), Expect = 1.090e-6
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKPPPKA 237
            ++ E + ALK+R GSS+ AI K I +   S     H M++ALK GVE G          +QVK+SYKLS EAKKPP KA
Sbjct:   31 VIKECLLALKDRTGSSVYAINKWIESEKKSP-IKKHVMKAALKSGVEKGIL--------IQVKNSYKLSPEAKKPPKKA 100
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: W5JX74_ANODA (Histone H1 n=3 Tax=argyritarsis section TaxID=44545 RepID=W5JX74_ANODA)

HSP 1 Score: 55.5 bits (132), Expect = 1.750e-6
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSS--LNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKS-----SYKLSAEAKKP 225
            M++ AIKALKERNGSS+QAIKK++ A+ ++     TP   RS LK GV +GK         +Q K      S+KLSAEAKKP
Sbjct:   47 MILAAIKALKERNGSSLQAIKKYLAANYTADVAKLTPFIKRS-LKTGVTNGKL--------VQTKGTGATGSFKLSAEAKKP 119
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4BWE3_PYTIN3.640e-748.00E1 ubiquitin-activating enzyme n=1 Tax=Pythium ins... [more]
A0A6A3F8I3_9STRA4.260e-746.67H15 domain-containing protein n=4 Tax=Phytophthora... [more]
A0A7S1VXP0_9STRA6.910e-747.37Hypothetical protein (Fragment) n=4 Tax=Ditylum br... [more]
A0A7S2EXL4_TRICV1.090e-648.10Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
W5JX74_ANODA1.750e-650.00Histone H1 n=3 Tax=argyritarsis section TaxID=4454... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig995contigF-serratus_M_contig995:29729..30398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue2.2e-19
Seed eggNOG ortholog2880.D7FWJ4
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size534
Cds size534
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932792.851936-CDS-F-serratus_M_contig995:29728..301091622932792.851936-CDS-F-serratus_M_contig995:29728..30109Fucus serratus maleCDSF-serratus_M_contig995 29729..30109 -
1690964478.3247275-CDS-F-serratus_M_contig995:29728..301091690964478.3247275-CDS-F-serratus_M_contig995:29728..30109Fucus serratus maleCDSF-serratus_M_contig995 29729..30109 -
1622932792.9591563-CDS-F-serratus_M_contig995:30245..303981622932792.9591563-CDS-F-serratus_M_contig995:30245..30398Fucus serratus maleCDSF-serratus_M_contig995 30246..30398 -
1690964478.33906-CDS-F-serratus_M_contig995:30245..303981690964478.33906-CDS-F-serratus_M_contig995:30245..30398Fucus serratus maleCDSF-serratus_M_contig995 30246..30398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig995.21236.1prot_F-serratus_M_contig995.21236.1Fucus serratus malepolypeptideF-serratus_M_contig995 29729..30398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig995.21236.1

>prot_F-serratus_M_contig995.21236.1 ID=prot_F-serratus_M_contig995.21236.1|Name=mRNA_F-serratus_M_contig995.21236.1|organism=Fucus serratus male|type=polypeptide|length=178bp
MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGK
FFYFCFVPKMQVKSSYKLSAEAKKPPPKAKIVKKVAPKKPTKKPASAKKP
TAKKATTKKATTTKTKKVTTAKKPTTAKKSTTTKKPAATKKTATTTKKTV
TKKSATSSKTASSKKAAPKKAVEAKGD*
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mRNA from alignment at F-serratus_M_contig995:29729..30398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig995.21236.1 ID=mRNA_F-serratus_M_contig995.21236.1|Name=mRNA_F-serratus_M_contig995.21236.1|organism=Fucus serratus male|type=mRNA|length=670bp|location=Sequence derived from alignment at F-serratus_M_contig995:29729..30398- (Fucus serratus male)
ATGGTGATTGAGGCAATAAAGGCCCTCAAGGAACGCAACGGCTCCAGTAT
CCAGGCCATCAAGAAGCACATCACCGCCAGTAATTCTTCCCTCAACTTCA
CGCCACACCAGATGCGTAGCGCTCTCAAGAAAGGGGTCGAGTCTGGAAAG
TTCGTCAAGGTCGGTCATCCGTCATATTTCAAAAAGTGATGCCCGCTCCC
AGCTCTTTTTTTGTGCCTGTAGGTATCTCGGTACCCGTGAATTACAACGG
ATTGCTTTCACTTCGGAACTAACCTGGAGCTAACAAAAGTTTTATTTTTG
CTTTGTTCCCAAAATGCAGGTGAAAAGCTCCTATAAGTTGAGCGCCGAAG
CTAAGAAGCCCCCTCCGAAGGCGAAGATAGTGAAGAAGGTTGCACCCAAG
AAGCCCACCAAGAAACCAGCCAGCGCCAAGAAACCCACCGCGAAGAAAGC
AACCACCAAGAAAGCAACCACGACCAAAACGAAGAAGGTAACCACGGCTA
AGAAGCCCACCACCGCCAAAAAGTCCACCACCACCAAAAAGCCCGCTGCC
ACCAAAAAGACCGCTACTACCACCAAGAAAACGGTTACCAAAAAATCTGC
CACGTCTTCGAAAACCGCTTCCTCGAAGAAGGCGGCTCCCAAAAAGGCCG
TCGAAGCCAAGGGCGACTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig995:29729..30398-

>mRNA_F-serratus_M_contig995.21236.1 ID=mRNA_F-serratus_M_contig995.21236.1|Name=mRNA_F-serratus_M_contig995.21236.1|organism=Fucus serratus male|type=CDS|length=1068bp|location=Sequence derived from alignment at F-serratus_M_contig995:29729..30398- (Fucus serratus male)
ATGGTGATTGAGGCAATAAAGGCCCTCAAGGAACGCAACGGCTCCAGTAT
CCAGGCCATCAAGAAGCACATCACCGCCAGTAATTCTTCCCTCAACTTCA
CGCCACACCAGATGCGTAGCGCTCTCAAGAAAGGGGTCGAGTCTGGAAAG
TTCATGGTGATTGAGGCAATAAAGGCCCTCAAGGAACGCAACGGCTCCAG
TATCCAGGCCATCAAGAAGCACATCACCGCCAGTAATTCTTCCCTCAACT
TCACGCCACACCAGATGCGTAGCGCTCTCAAGAAAGGGGTCGAGTCTGGA
AAGTTCTTTTATTTTTGCTTTGTTCCCAAAATGCAGGTGAAAAGCTCCTA
TAAGTTGAGCGCCGAAGCTAAGAAGCCCCCTCCGAAGGCGAAGATAGTGA
AGAAGGTTGCACCCAAGAAGCCCACCAAGAAACCAGCCAGCGCCAAGAAA
CCCACCGCGAAGAAAGCAACCACCAAGAAAGCAACCACGACCAAAACGAA
GAAGGTAACCACGGCTAAGAAGCCCACCACCGCCAAAAAGTCCACCACCA
CCAAAAAGCCCGCTGCCACCAAAAAGACCGCTACTACCACCAAGAAAACG
GTTACCAAAAAATCTGCCACGTCTTCGAAAACCGCTTCCTCGAAGAAGGC
GGCTCCCAAAAAGGCCGTCGAAGCCAAGGGCGACTAATTTTATTTTTGCT
TTGTTCCCAAAATGCAGGTGAAAAGCTCCTATAAGTTGAGCGCCGAAGCT
AAGAAGCCCCCTCCGAAGGCGAAGATAGTGAAGAAGGTTGCACCCAAGAA
GCCCACCAAGAAACCAGCCAGCGCCAAGAAACCCACCGCGAAGAAAGCAA
CCACCAAGAAAGCAACCACGACCAAAACGAAGAAGGTAACCACGGCTAAG
AAGCCCACCACCGCCAAAAAGTCCACCACCACCAAAAAGCCCGCTGCCAC
CAAAAAGACCGCTACTACCACCAAGAAAACGGTTACCAAAAAATCTGCCA
CGTCTTCGAAAACCGCTTCCTCGAAGAAGGCGGCTCCCAAAAAGGCCGTC
GAAGCCAAGGGCGACTAA
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