mRNA_F-serratus_M_contig995.21236.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig995.21236.1
Unique NamemRNA_F-serratus_M_contig995.21236.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.420e-24
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKPPPK 234
            MV +AIK+LKERNGSSIQAIKK ITA+  +LNFTPHQMRSALKKGVE+GKF        ++VKSSYKLSAEAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKF--------IKVKSSYKLSAEAKKPVPK 70
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 7.750e-24
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKPPPK 234
            MV +AIK LKERNGSSIQAIKK ITA+  +LNFTPHQMRSALKKGVESGKF        +++K+SYKLSAEAKKP PK
Sbjct:   11 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKF--------IKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.230e-23
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKPPPK 234
            MV +AIK LKERNGSSIQAIKK ITA+  +LNFTPHQMRSALKKGVESGKF        +++K+SYKLSAEAKKP PK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKF--------VKMKASYKLSAEAKKPAPK 70
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 8.230e-21
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKPPP 231
            MV +AIK LKERNGSSIQAIKK ITA+  +LNFTPHQMR ALKKGVESGKF        +++K+SYKLS EAKKP P
Sbjct:  104 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKF--------IKMKASYKLSPEAKKPAP 172
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.570e-20
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKP 225
            MV +AIKALKER GSS+ A+KK I A+  SLNFTPHQMRSALKKG ESGKF        ++VKSSYKLS EAKKP
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKF--------IKVKSSYKLSPEAKKP 67
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.760e-20
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKP 225
            MV +AIKALKER GSS+ A+KK I A+  SLNFTPHQMRSALKKG ESGKF        ++VKSSYKLS EAKKP
Sbjct:   12 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKF--------IKVKSSYKLSPEAKKP 78
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.190e-17
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKP 225
            M IEA+KALKERNGSS+ AIKKHITAS  SL FT H MRSALKKGVESGKF        ++VK+SYKLSA  ++P
Sbjct:    7 MTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKF--------IKVKNSYKLSAYRQEP 73
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BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.690e-16
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   13 AIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSAEAKKPP 228
            AI ALKERNGSS+ AIKKHI A+  +LNF PHQ+R ALKKG E+G F        ++VK+SYK+S EAKKPP
Sbjct:   11 AILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTF--------IKVKASYKVSPEAKKPP 74
[Close]
BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.950e-16
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKFFYFCFVPKMQVKSSYKLSA 210
            M +EA+KALKERNGSS+ AIKKHITAS  SL FT H +RSALKKGVESGKF        ++VK+SYKLSA
Sbjct:    7 MTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKF--------IKVKNSYKLSA 68
[Close]
BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.480e-16
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGKF 153
            MV +AIK LKERNGSSIQA+KK ITA+  +L+FTPHQMRSALKKGVE+GKF
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKF 51
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig995.21236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ75_ECTSI7.420e-2474.36H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQ80_ECTSI7.750e-2473.08Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KST0_9PHAE1.230e-2373.08H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
A0A6H5KCU1_9PHAE8.230e-2170.13H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE1.570e-2069.33H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI3.760e-2069.33H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LJB8_ECTSI2.190e-1768.00H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI2.690e-1662.50H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE2.950e-1668.57H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE3.480e-1678.43H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig995contigF-serratus_M_contig995:29729..30398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue2.2e-19
Seed eggNOG ortholog2880.D7FWJ4
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size534
Cds size534
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932792.851936-CDS-F-serratus_M_contig995:29728..301091622932792.851936-CDS-F-serratus_M_contig995:29728..30109Fucus serratus maleCDSF-serratus_M_contig995 29729..30109 -
1690964478.3247275-CDS-F-serratus_M_contig995:29728..301091690964478.3247275-CDS-F-serratus_M_contig995:29728..30109Fucus serratus maleCDSF-serratus_M_contig995 29729..30109 -
1622932792.9591563-CDS-F-serratus_M_contig995:30245..303981622932792.9591563-CDS-F-serratus_M_contig995:30245..30398Fucus serratus maleCDSF-serratus_M_contig995 30246..30398 -
1690964478.33906-CDS-F-serratus_M_contig995:30245..303981690964478.33906-CDS-F-serratus_M_contig995:30245..30398Fucus serratus maleCDSF-serratus_M_contig995 30246..30398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig995.21236.1prot_F-serratus_M_contig995.21236.1Fucus serratus malepolypeptideF-serratus_M_contig995 29729..30398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig995.21236.1

>prot_F-serratus_M_contig995.21236.1 ID=prot_F-serratus_M_contig995.21236.1|Name=mRNA_F-serratus_M_contig995.21236.1|organism=Fucus serratus male|type=polypeptide|length=178bp
MVIEAIKALKERNGSSIQAIKKHITASNSSLNFTPHQMRSALKKGVESGK
FFYFCFVPKMQVKSSYKLSAEAKKPPPKAKIVKKVAPKKPTKKPASAKKP
TAKKATTKKATTTKTKKVTTAKKPTTAKKSTTTKKPAATKKTATTTKKTV
TKKSATSSKTASSKKAAPKKAVEAKGD*
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mRNA from alignment at F-serratus_M_contig995:29729..30398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig995.21236.1 ID=mRNA_F-serratus_M_contig995.21236.1|Name=mRNA_F-serratus_M_contig995.21236.1|organism=Fucus serratus male|type=mRNA|length=670bp|location=Sequence derived from alignment at F-serratus_M_contig995:29729..30398- (Fucus serratus male)
ATGGTGATTGAGGCAATAAAGGCCCTCAAGGAACGCAACGGCTCCAGTAT
CCAGGCCATCAAGAAGCACATCACCGCCAGTAATTCTTCCCTCAACTTCA
CGCCACACCAGATGCGTAGCGCTCTCAAGAAAGGGGTCGAGTCTGGAAAG
TTCGTCAAGGTCGGTCATCCGTCATATTTCAAAAAGTGATGCCCGCTCCC
AGCTCTTTTTTTGTGCCTGTAGGTATCTCGGTACCCGTGAATTACAACGG
ATTGCTTTCACTTCGGAACTAACCTGGAGCTAACAAAAGTTTTATTTTTG
CTTTGTTCCCAAAATGCAGGTGAAAAGCTCCTATAAGTTGAGCGCCGAAG
CTAAGAAGCCCCCTCCGAAGGCGAAGATAGTGAAGAAGGTTGCACCCAAG
AAGCCCACCAAGAAACCAGCCAGCGCCAAGAAACCCACCGCGAAGAAAGC
AACCACCAAGAAAGCAACCACGACCAAAACGAAGAAGGTAACCACGGCTA
AGAAGCCCACCACCGCCAAAAAGTCCACCACCACCAAAAAGCCCGCTGCC
ACCAAAAAGACCGCTACTACCACCAAGAAAACGGTTACCAAAAAATCTGC
CACGTCTTCGAAAACCGCTTCCTCGAAGAAGGCGGCTCCCAAAAAGGCCG
TCGAAGCCAAGGGCGACTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig995:29729..30398-

>mRNA_F-serratus_M_contig995.21236.1 ID=mRNA_F-serratus_M_contig995.21236.1|Name=mRNA_F-serratus_M_contig995.21236.1|organism=Fucus serratus male|type=CDS|length=1068bp|location=Sequence derived from alignment at F-serratus_M_contig995:29729..30398- (Fucus serratus male)
ATGGTGATTGAGGCAATAAAGGCCCTCAAGGAACGCAACGGCTCCAGTAT
CCAGGCCATCAAGAAGCACATCACCGCCAGTAATTCTTCCCTCAACTTCA
CGCCACACCAGATGCGTAGCGCTCTCAAGAAAGGGGTCGAGTCTGGAAAG
TTCATGGTGATTGAGGCAATAAAGGCCCTCAAGGAACGCAACGGCTCCAG
TATCCAGGCCATCAAGAAGCACATCACCGCCAGTAATTCTTCCCTCAACT
TCACGCCACACCAGATGCGTAGCGCTCTCAAGAAAGGGGTCGAGTCTGGA
AAGTTCTTTTATTTTTGCTTTGTTCCCAAAATGCAGGTGAAAAGCTCCTA
TAAGTTGAGCGCCGAAGCTAAGAAGCCCCCTCCGAAGGCGAAGATAGTGA
AGAAGGTTGCACCCAAGAAGCCCACCAAGAAACCAGCCAGCGCCAAGAAA
CCCACCGCGAAGAAAGCAACCACCAAGAAAGCAACCACGACCAAAACGAA
GAAGGTAACCACGGCTAAGAAGCCCACCACCGCCAAAAAGTCCACCACCA
CCAAAAAGCCCGCTGCCACCAAAAAGACCGCTACTACCACCAAGAAAACG
GTTACCAAAAAATCTGCCACGTCTTCGAAAACCGCTTCCTCGAAGAAGGC
GGCTCCCAAAAAGGCCGTCGAAGCCAAGGGCGACTAATTTTATTTTTGCT
TTGTTCCCAAAATGCAGGTGAAAAGCTCCTATAAGTTGAGCGCCGAAGCT
AAGAAGCCCCCTCCGAAGGCGAAGATAGTGAAGAAGGTTGCACCCAAGAA
GCCCACCAAGAAACCAGCCAGCGCCAAGAAACCCACCGCGAAGAAAGCAA
CCACCAAGAAAGCAACCACGACCAAAACGAAGAAGGTAACCACGGCTAAG
AAGCCCACCACCGCCAAAAAGTCCACCACCACCAAAAAGCCCGCTGCCAC
CAAAAAGACCGCTACTACCACCAAGAAAACGGTTACCAAAAAATCTGCCA
CGTCTTCGAAAACCGCTTCCTCGAAGAAGGCGGCTCCCAAAAAGGCCGTC
GAAGCCAAGGGCGACTAA
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