mRNA_F-serratus_M_contig994.21225.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Match: A0A7W0Y322_9DELT (Class I SAM-dependent rRNA methyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0Y322_9DELT) HSP 1 Score: 80.5 bits (197), Expect = 6.360e-13 Identity = 54/143 (37.76%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 2209 RSSLDSAVTEEEAFAPGRTDGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDL-AETTSFVRAEALHFARQAASEGRAWDLVVIDPPTLRRKSNARAS--NAYARMAGAVSRLLRSGG 2628 R +D ++ F + D R +R+ + GLEVL+L+C TGGF++++ALGGA VD +A A+ + QN + L A V +A F +AA GR WDLV++DPP+ AR S AY R+A A + GG Sbjct: 42 RFGVDVRAGQKTGFFLDQRDNRRAIRRHAAGLEVLNLYCYTGGFSIHAALGGAARVTSVDLAAPAIAALTQNLARSGLDASGHELVCVDAFDFLARAAERGRRWDLVIVDPPSFAPNEKARQSALGAYRRLARAGLDVTAPGG 184
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Match: A0A1F3YQ32_9PROT (23S rRNA methyltransferase n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3YQ32_9PROT) HSP 1 Score: 83.2 bits (204), Expect = 6.410e-13 Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 2236 EEEAFAPGRTDGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDL-AETTSFVRAEALHFARQAASEGRAWDLVVIDPPTLR--RKSNARASNAYARMAGAVSRLLRSGGMLMVVDGSGGEIFETHEEMVRDVFARSG 2712 ++ F + D R +R+++ G EVL+ FC TGGF++ + GGA SA+ VD S A+ + +NA AN A ++ A+ + R A S+GR++DL+V+DPP + A+ AY + +LLR GGML SGG + +++V A +G Sbjct: 201 QKTGFYLDQRDNRNRIRELASGREVLNCFCYTGGFSIAALAGGALSAVSVDSSGPALELARRNAQANGFDAPRAEWIEADIFRYLRDARSQGRSFDLIVLDPPKFAPTERHAPAAARAYKDINLNALKLLRPGGMLATFSCSGGVSADLFQKIVAGATADAG 362
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Match: A0A7S0X2R3_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X2R3_9CHLO) HSP 1 Score: 84.0 bits (206), Expect = 9.980e-13 Identity = 62/172 (36.05%), Postives = 87/172 (50.58%), Query Frame = 1 Query: 2236 EEEAFAPGRTDGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDLAETTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSNARASNAYARMAGAVSRLLRSGGMLMVVDGSGGEIFETHEEMVRDVFARSGEGCGSQFDVAR 2745 ++ F + D RA V + +G VLDL C +GGFAL +A GAR +GVD S A+ + NA N L + SFV+A+ + R+A GRA+D+VV+DPP L R + RA Y R+ +L+ GG+L SG ++SGE D AR Sbjct: 415 QKTGFYADQRDTRAYVAALCKGRSVLDLCCYSGGFALAAARAGAREVVGVDSSGPALALARDNAALNAL-DQVSFVKADVSEYMREADEAGRAYDVVVLDPPKLAPNRGTLPRARTKYQRLNEQAMKLVAPGGLLTTCSCSG-------------AMSQSGEFVPMLMDAAR 572
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Match: A0A836CPI8_9STRA (Ribosomal RNA large subunit methyltransferase I-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPI8_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.430e-12 Identity = 53/138 (38.41%), Postives = 81/138 (58.70%), Query Frame = 1 Query: 2230 VTEEEAFAPGRTDGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDLAETTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSNARASNAYARMAGAVSRLLRSGGMLM 2637 + ++ F + + R VR+++ G VLD+FC +GGFALN+A GGA + VD S AV + A NA AN L +F +A+AL + A + G +D+V++DPP L +KS RA Y R+ +L+ GG+L+ Sbjct: 230 IGQKTGFYCDQRENREAVRRLAAGKTVLDMFCYSGGFALNAAAGGAAAVTAVDSSQGAVDAGAANAEANGL--RVAFEKADALKWMEAAVARGEKYDMVILDPPKLAPNKKSLPRALGRYRRINALGLQLVAPGGLLL 365
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Match: UPI00103662EF (uncharacterized protein LOC114286087 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI00103662EF) HSP 1 Score: 81.3 bits (199), Expect = 1.720e-12 Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 2236 EEEAFAPGRTDGRALVRKVSRGLEVLDLFCGTGGFALNSALGGARSALGVDKSARAVRSSAQNALANDLAE-TTSFVRAEALHFARQAASEGRAWDLVVIDPPTL--RRKSNARASNAYARMAGAVSRLLRSGGMLMVVDGSG 2655 ++ F + + R + +S G +VLD++C +GGFALN++ GGA + GVD S A+ + +N N+L S +R +A F + A S WD++++DPP L RRK AS Y + +L + GG+LM SG Sbjct: 153 QKTGFYADQRENRQFISTISDGQKVLDMYCYSGGFALNASRGGAMNVTGVDSSLPALELANENIALNNLDPGKISVLRCDATDFMKDALSRNETWDIIIMDPPKLAPRRKVLQSASGMYRNLNSLAMQLTKRGGLLMTCSCSG 295 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig994.21225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig994.21225.1 >prot_F-serratus_M_contig994.21225.1 ID=prot_F-serratus_M_contig994.21225.1|Name=mRNA_F-serratus_M_contig994.21225.1|organism=Fucus serratus male|type=polypeptide|length=899bp MWPTPHYLLSPFAGFPQGPPVFGAISPRPLGVSQHFAAEHATGADFISSIback to top mRNA from alignment at F-serratus_M_contig994:13542..24907+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig994.21225.1 ID=mRNA_F-serratus_M_contig994.21225.1|Name=mRNA_F-serratus_M_contig994.21225.1|organism=Fucus serratus male|type=mRNA|length=11366bp|location=Sequence derived from alignment at F-serratus_M_contig994:13542..24907+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig994:13542..24907+ >mRNA_F-serratus_M_contig994.21225.1 ID=mRNA_F-serratus_M_contig994.21225.1|Name=mRNA_F-serratus_M_contig994.21225.1|organism=Fucus serratus male|type=CDS|length=5394bp|location=Sequence derived from alignment at F-serratus_M_contig994:13542..24907+ (Fucus serratus male)back to top |