mRNA_F-serratus_M_contig993.21218.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig993.21218.1 vs. uniprot
Match: D7G1D3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D3_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.100e-49 Identity = 315/1129 (27.90%), Postives = 426/1129 (37.73%), Query Frame = 2
Query: 308 VELELQRLGGYSGLLRLLRAPPEFESSGAFTARVELAAALIACITVNASNSIRCGGIVLVSSLEGRVPGEDYASGLHRGNNAPAPPVEYAEWEAAVLMSVIDTLQGSCTLAARTIFLRVVATLGNRIQDAGVASRLFHVLSDGIRHNDAQCCGFVSRALAVGMHADAEFSRQSAC-MYRITVLLALAFPG-RVSISPQDLPWDFCKRKGGVEAPPVYPMWSLVSGNCAGM-----ARENALSCLNSILMASDTAGEIIRVAKGVEPLFLLTMGEEPPSS-----SCSEVHDRLTRPIYGEEAPSY---RQRSTTRARARTSVSSSNPTSASRGDFPPPAPGCKRLRTAGATPLKKSSACPRRHREPSDAPPAIGGTSSEISTVENVRFIEGEGEAKERNSSKETRLGASAIDVRSPEEASMPGTKIGCVDRLEKGASLIGLSPRAGLYAIEFGVDRAGRLRILATSCLVRCLQKRKTGAGAPGRREAVVGSDNRDEQSSSNDSNVSPASGAALGEERRDEKSRGSSVASSVRRHHKRLKASRKGITATVVTRPYKRENKTRRREHSMPKRTVPTRDGIDSDQHPLDTKPYGWCGNDAIVGIYHRVGIEGRDVSAGEGQESRHHQSTKVFVELEQLGAVRRAPELLRAENPLLQELGVLLLLHGVEH-------GR-HKPLLSQSGTR----------------------------GSGCL-RSLCWLLLHRRQQVSRAAATLMAALA---------------LRPQRGGWILA-LIEQGCVPLLRMVTG--APSFPSASKKGVDNTFPAEDAVLSSVPHRSVATPDRGREPPDVKGINPRGVSGSSGQAGQLMGPQLENVIDDAAFGGRSSRQDPGRIEKSASDKNEEDYPRETAKVILKTLSKEATTRYLERLVRIVRVSGNPELRKNIALGLVLLSTENTETQRGKKARRSFVTGGALAGVLGMLRSPTGRPGAVSFLRMVAALLD-DPQPPVEFS-GV-------------GLPEGGTTSTPLEELEEKANSNRRTGGGDLDDSIFLVQDPLACFRKDDSKVEKEEG---SRGGKAETEGIKMACPPRDVICQASSELKRLMAETPHGRLPLLSGRYKTWEEVMAH 3430
+ELEL+RLG G+L LLR ES + R++L AAL+AC + +CG + + G G++ S L A W L SV+ + Q C VSRALA+G+H + ++ A +R+T LLA+ FPG +V I + G V+A SL S RENALSC+ SI+ A TA E I+ A+G+ PLF+L MGEEP S S E RP P R+ STT S ++S+ S R G KR T GA +S P + A G+ A+A D++S E +P R G G+S R G A E D A G R A G + + S+S+ ++ + + G E RG V R K L + A+++ G+ H L T G G + + EG S ++++ R+ QELGV++L G+E GR + ++G + GSG L RSLCWLLLH+R+ VS AA ++ ALA + W++ LIEQGCVP+LRM G APS T AE V G G +++ R+ A+VIL+ + EA R+ RLVR V SG+ +LR N+ALGL +LS T G++A FVTGGAL VLGMLRSPTGRP AVSFLR V+ALL DP P FS GV G +GG + P E +E+ +D++ LV DPL C +E+E+G RG E EGIKMACPPR VIC+AS+ L+ ++ +P G LPLL GRY+TWEE H
Sbjct: 7 LELELRRLGCVDGVLGLLRRRSINESDHVYADRIQLGAALLACKLDLRAAPTKCGATAIAAG-RGGAGGDEEGSALA------------ASWGEEALASVLTLV--------------------------------------------VQGCRHVSRALALGLHESEDCAKAFAHDEHRVTTLLAIVFPGGQVKILGDH--GNVAASSGTVDAAATATSASLGSLGAETSIGDYETRENALSCIYSIVQADATAVESIQSARGLWPLFVLAMGEEPASGDGDGLSAREGQGNHRRPRTSMPGPRLFPSRRNSTTSTVV--SFAASDGGSGGRDGI-----GVKRPMTTGAWTPARSPLVPDK---------AASGS-------------------------------ATAADLKSWGERGLPRRGGQATGRDGGG----GVS-RRGAPASE-NPDAAXXXXXXXXXXXXXXXXXXXXXXSEGGLRTAGGGHEAQPALSASSPRAIAVDAVFSGG----GEGGRGGGVT----RRDKPLTL----LAASILLA------------------------GLRGGAHRLATVKLGRGGRGXXXXXXXXXXXSKQPTGSREGASSGSKRNSR------------------RSTTGRKQELGVVILERGIEELEGWAYVGRGEEGAADETGKQDARXXXXXXXXXXXXXXXXXXXXQLVRAGSGTLLRSLCWLLLHQRRGVSDGAAAILLALAATLTSTPNNTHLKHAVHDGPAAWVVIDLIEQGCVPILRMAGGGVAPS-----------TLEAE-------------------------------VEGGGG-----------SIVS-----------------------------RQAARVILEAVVAEACGRHAGRLVRSVMSSGSRKLRANVALGLTVLSA-GTGGVLGREAWELFVTGGALPAVLGMLRSPTGRPAAVSFLRTVSALLGGDPAPQNIFSEGVVYYEGKGGGYSREGWADGGGLAGPSESADEEE-----------EDTVVLVVDPLTC-------LEREKGISSDRGEHTEEEGIKMACPPRKVICRASTRLRDVIINSPAGELPLLRGRYRTWEEASIH 868
BLAST of mRNA_F-serratus_M_contig993.21218.1 vs. uniprot
Match: D7FM96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM96_ECTSI) HSP 1 Score: 130 bits (328), Expect = 8.410e-31 Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 2
Query: 3185 DDSIFLVQDPLACFRKDDSKVEKEEG---SRGGKAETEGIKMACPPRDVICQASSELKRLMAETPHGRLPLLSGRYKTWEEVMAHIGAPHTFGSSCSRYSTAFLLEMFAIAARFSIK 3526
+D++ LV DPL C +E+E+G RG E EGIKMACPPR VIC+AS+ L+ ++ +P G LPLL GRY+TWEEVMAH+GAPHTF +S YST FL+EMF +AA F+I+
Sbjct: 20 EDTVVLVVDPLTC-------LEREKGISSDRGEHTEEEGIKMACPPRKVICRASTRLRDVIINSPAGELPLLRGRYRTWEEVMAHMGAPHTFTASGPGYSTEFLMEMFVLAATFNIE 129 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig993.21218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig993.21218.1 >prot_F-serratus_M_contig993.21218.1 ID=prot_F-serratus_M_contig993.21218.1|Name=mRNA_F-serratus_M_contig993.21218.1|organism=Fucus serratus male|type=polypeptide|length=1246bp MSVNVTNSPLINDAPESSDIMIIMAVELELQRLGGYSGLLRLLRAPPEFEback to top mRNA from alignment at F-serratus_M_contig993:160..8485+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig993.21218.1 ID=mRNA_F-serratus_M_contig993.21218.1|Name=mRNA_F-serratus_M_contig993.21218.1|organism=Fucus serratus male|type=mRNA|length=8326bp|location=Sequence derived from alignment at F-serratus_M_contig993:160..8485+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig993:160..8485+ >mRNA_F-serratus_M_contig993.21218.1 ID=mRNA_F-serratus_M_contig993.21218.1|Name=mRNA_F-serratus_M_contig993.21218.1|organism=Fucus serratus male|type=CDS|length=7476bp|location=Sequence derived from alignment at F-serratus_M_contig993:160..8485+ (Fucus serratus male)back to top |