mRNA_F-serratus_M_contig990.21211.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.020e-26 Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W IRRY ELFD+P LK R+++AEA+ ALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G GRG E+ Sbjct: 80 AAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQ 215
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.220e-26 Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W I+RY ELFD+P LK R+++AEA+EALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G G+G E+ Sbjct: 550 AAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQ 685
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.540e-26 Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W IRRY ELFD+P LK R+++AEA+ ALLYGC W+ R++HY L+ HHR+LLR++G +R+ + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G G+G E+ Sbjct: 221 AAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 356
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.220e-26 Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W I+RY ELFD+P LK R+++AEA+EALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G G+G E+ Sbjct: 1166 AAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 1301
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.390e-26 Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W I+RY ELFD+P LK R+++AEA+EALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G G+G E+ Sbjct: 1370 AAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 1505 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig990.21211.1 >prot_F-serratus_M_contig990.21211.1 ID=prot_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=polypeptide|length=113bp MRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLback to top mRNA from alignment at F-serratus_M_contig990:194761..197144+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig990.21211.1 ID=mRNA_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=mRNA|length=2384bp|location=Sequence derived from alignment at F-serratus_M_contig990:194761..197144+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig990:194761..197144+ >mRNA_F-serratus_M_contig990.21211.1 ID=mRNA_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig990:194761..197144+ (Fucus serratus male)back to top |