mRNA_F-serratus_M_contig990.21211.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig990.21211.1
Unique NamemRNA_F-serratus_M_contig990.21211.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.020e-26
Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = 2 
Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993
            A+W  IRRY  ELFD+P     LK R+++AEA+ ALLYGC  W+ R+ HY  L+  HHR+LLR++G +R+R  +   SY  AL+   CQS+E T+R RRLL+AG + R   GRLP R+M   L G    GRG  E+
Sbjct:   80 AAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQ 215
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BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.220e-26
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 2 
Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993
            A+W  I+RY  ELFD+P     LK R+++AEA+EALLYGC  W+ R+ HY  L+  HHR+LLR++G +R+R  +   SY  AL+   CQS+E T+R RRLL+AG + R   GRLP R+M   L G    G+G  E+
Sbjct:  550 AAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQ 685
[Close]
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.540e-26
Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 2 
Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993
            A+W  IRRY  ELFD+P     LK R+++AEA+ ALLYGC  W+ R++HY  L+  HHR+LLR++G +R+   +   SY  AL+   CQS+E T+R RRLL+AG + R   GRLP R+M   L G    G+G  E+
Sbjct:  221 AAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 356
[Close]
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.220e-26
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 2 
Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993
            A+W  I+RY  ELFD+P     LK R+++AEA+EALLYGC  W+ R+ HY  L+  HHR+LLR++G +R+R  +   SY  AL+   CQS+E T+R RRLL+AG + R   GRLP R+M   L G    G+G  E+
Sbjct: 1166 AAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 1301
[Close]
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.390e-26
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 2 
Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993
            A+W  I+RY  ELFD+P     LK R+++AEA+EALLYGC  W+ R+ HY  L+  HHR+LLR++G +R+R  +   SY  AL+   CQS+E T+R RRLL+AG + R   GRLP R+M   L G    G+G  E+
Sbjct: 1370 AAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 1505
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4M0_9PHAE1.020e-2648.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX7_9PHAE1.220e-2647.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLC4_9PHAE1.540e-2647.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE2.220e-2647.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE2.390e-2647.79Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig990contigF-serratus_M_contig990:194761..197144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.4
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog6500.XP_005092035.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs39TZY@33154,3BI15@33208,3D94V@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size2384
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig990.21211.1prot_F-serratus_M_contig990.21211.1Fucus serratus malepolypeptideF-serratus_M_contig990 196355..196693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932787.430749-UTR-F-serratus_M_contig990:194760..1963541622932787.430749-UTR-F-serratus_M_contig990:194760..196354Fucus serratus maleUTRF-serratus_M_contig990 194761..196354 +
1690964475.5093565-UTR-F-serratus_M_contig990:194760..1963541690964475.5093565-UTR-F-serratus_M_contig990:194760..196354Fucus serratus maleUTRF-serratus_M_contig990 194761..196354 +
1622932787.4670157-UTR-F-serratus_M_contig990:196693..1971441622932787.4670157-UTR-F-serratus_M_contig990:196693..197144Fucus serratus maleUTRF-serratus_M_contig990 196694..197144 +
1690964475.5323055-UTR-F-serratus_M_contig990:196693..1971441690964475.5323055-UTR-F-serratus_M_contig990:196693..197144Fucus serratus maleUTRF-serratus_M_contig990 196694..197144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932787.4485574-CDS-F-serratus_M_contig990:196354..1966931622932787.4485574-CDS-F-serratus_M_contig990:196354..196693Fucus serratus maleCDSF-serratus_M_contig990 196355..196693 +
1690964475.5229292-CDS-F-serratus_M_contig990:196354..1966931690964475.5229292-CDS-F-serratus_M_contig990:196354..196693Fucus serratus maleCDSF-serratus_M_contig990 196355..196693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig990.21211.1

>prot_F-serratus_M_contig990.21211.1 ID=prot_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=polypeptide|length=113bp
MRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKL
RIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWA
GTLIRMSCGRLP*
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mRNA from alignment at F-serratus_M_contig990:194761..197144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig990.21211.1 ID=mRNA_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=mRNA|length=2384bp|location=Sequence derived from alignment at F-serratus_M_contig990:194761..197144+ (Fucus serratus male)
GCTTGTTTTACCATTGTTGTGGACACTATGACCAGGATGTGGTGCAGATA
TGGCGGAAAAAAGCCTGTGAGCCTGTGTGCGTGTTCCAAGGAGGGTAATA
GCTGGGGATGCTAGGATGACAAATCGGTTGGGGAAGGGAGGGTCATAGGG
GTTGGATGTTTCCGGTAACGTGGCGATCTCGACCGCACCGTGCGCATGCT
TGCCACGTGGCGACGTGTTAGGTCTATATTCACTGCACGTTTGTATTAGG
AAGTAGAGCCTATTCAAGCAGTTTGTGGTGGTGTTGTATCAAAAAGTAGT
GTTTCGTAAGCATTTTTGGTTCTGCTCGTTTGTGCCGAGACTTTTGATAA
AACTTGGCCCATGAGTCAGTAAATATTTGATATTATATAGTAACTAACGT
GCCTGGTACTGCTGTAGCAACCTTTTTGGAGTCGTTATGTGTGGAGAGAA
GAAAATGGAACCGAGTGGGTATTTTGAGGAAGTGTTTGACGTTCTTGTCT
GTCTGTTGTCTATTCCTACGAGAAATCGCGTGTGTGAATGGGGGATGGGG
GGGTATCTTTTGCTGGGCAAACGACACTTTTGTGCACATGTGCCTGTGTG
TCGTGTCTTGCCTGTTTTTCGTGTCCTCGTATATACTATACTGTGTATGC
GGTCTGTCGTCTCCAAGATGACCTGACCGCCTTCTATGGTCTGGTGGGTG
TGTTGAAGTGCGCAACACTGTTGTGGAGTCACGTGTACGCATGTACGCGC
ACAGCTTGCTGCGTGCGTTCGCTTGCGTGAGCTCTTCCCATGGTTTCCCT
TATTTATTTGTCGTAATTAGTGTCGGTATATCGTACTACGAGCAGTCTGA
TGCGTCCATCTAGCACGGGGCGCGATCCGCTATAAAAACAGCGTTCGAAC
TACTGTACTACTGATGCTGCAATTTTATATTAACTCTACTACTGTACTGC
TGTAGGTAGCCAATGTATTGTCTGCATTCATGAAGCTCTCGTGTAGTTGC
GTCGATTTCCTCATCCAAGCTCTAGAATTTGTCTAAATTTCAAGAAAAAC
TCTTACGTTTCCTTGAGTTAGAAGAACAGCATATCAAGTGAAGCGAAAAC
TAGTAGTTTAATGTCTGGAACAACCAGTGGTTTTTGTTTTTCGTCTTGAT
ACAAAACTGACCTCTGCGTACATCAACATGTCGTTAGGCAACACTGTACT
ATAATAGTGATACACTGTCTATAACTGTATACTGTTGCGGTCAGAGCTTA
CGACGGCAGATTGTCTATGGTTCGACGGGTGAGTGAGGTTTCGTCCACTG
TATCGTGGGCGTTGCCTGATAAATCTAATCATGTGCTGTTCGTTGTTGTA
GTAGAAGCACGTAAGTCCAGGGGAGAGGGGCAGTCAATGTAAAGGAATCC
CCAAACAAAAGGCCTGTCCGTCGAATGTCGTGAGCTAACGTCGCGCGTCT
CATGACTTAAGTTTGACCCCGCCAGTCGAGTGTAGAGTACCGGAGCCTAG
ACCGAGATCAAGTCACCTTCGTCAGCTCACTTAGTACGGCCAGCTTTACG
GAAACGAGGTTACTTCCCCCAACTGACTGTATAGTGCAAGCTGGATGCGC
ATTAGGCGGTACCAACGGGAGCTCTTCGACCAACCGAGAGTTGCGCTCTC
CCTCAAGATTCGAATGGTAAAGGCCGAGGCAATCGAGGCCCTCCTGTATG
GATGCAGTGCGTGGACCATCCGCCAGGAACACTACACCAAACTCCGCATC
GCACACCACCGGGTCTTGCTTCGCATCATGGGGGCGCAGCGCCAGAGACC
AGACCACGGGATGACCTCGTACAACTGTGCCCTTGAGATAACCCGGTGTC
AGAGCATTGAGATAACGTTGCGCACGAGAAGACTTTTGTGGGCGGGGACA
CTCATCCGAATGAGCTGCGGGCGGCTGCCATAACGAGTCATGATCAGTAT
CCTTGAGGGTGAAGTGCGGAGAGGGCGGGGTGGGAAGGAGAAAGGGGTGG
ACTGACTGCGCACGGAGCGACATCCAGGCGTTTGGCATAACGGGAGACTG
GGAAGCGATGGCACTAACGGCAGAGGTGTCGGTTGTGGTGGTCACGGGGG
CTGGGCGGAGGTTCATGGCCGCGTGGAGAAAAGAAGATAAAGACGCGGCC
AGACGTCGCCAGGAGAAGAGAGGGGCAACGGAGATTGGGAAAGTCGTTAT
CGCACACGAAAGCAGATTATAATTTTGCGAATCGCGCCCATTGGCCTGGT
CGACTAGTCGAAGGAATCCTTGTACGGACGCGAGACGGACCGAGACCTGC
GTAACGCCGACCTGCGTAGCGCCTATACTTGAAGATGCGTCGCGTGACTT
TTTGTTTTTCATTTTTTTCTCCGAACGAGCAGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig990:194761..197144+

>mRNA_F-serratus_M_contig990.21211.1 ID=mRNA_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig990:194761..197144+ (Fucus serratus male)
ATGCGCATTAGGCGGTACCAACGGGAGCTCTTCGACCAACCGAGAGTTGC
GCTCTCCCTCAAGATTCGAATGGTAAAGGCCGAGGCAATCGAGGCCCTCC
TGTATGGATGCAGTGCGTGGACCATCCGCCAGGAACACTACACCAAACTC
CGCATCGCACACCACCGGGTCTTGCTTCGCATCATGGGGGCGCAGCGCCA
GAGACCAGACCACGGGATGACCTCGTACAACTGTGCCCTTGAGATAACCC
GGTGTCAGAGCATTGAGATAACGTTGCGCACGAGAAGACTTTTGTGGGCG
GGGACACTCATCCGAATGAGCTGCGGGCGGCTGCCATAAATGCGCATTAG
GCGGTACCAACGGGAGCTCTTCGACCAACCGAGAGTTGCGCTCTCCCTCA
AGATTCGAATGGTAAAGGCCGAGGCAATCGAGGCCCTCCTGTATGGATGC
AGTGCGTGGACCATCCGCCAGGAACACTACACCAAACTCCGCATCGCACA
CCACCGGGTCTTGCTTCGCATCATGGGGGCGCAGCGCCAGAGACCAGACC
ACGGGATGACCTCGTACAACTGTGCCCTTGAGATAACCCGGTGTCAGAGC
ATTGAGATAACGTTGCGCACGAGAAGACTTTTGTGGGCGGGGACACTCAT
CCGAATGAGCTGCGGGCGGCTGCCATAA
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