mRNA_F-serratus_M_contig990.21211.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 131 bits (329), Expect = 4.830e-28 Identity = 67/136 (49.26%), Postives = 89/136 (65.44%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W IRRY ELFD+P LK R+++AEA+EALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G GRG E+ Sbjct: 382 AAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQ 517
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5KBN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN1_9PHAE) HSP 1 Score: 124 bits (311), Expect = 5.290e-28 Identity = 63/131 (48.09%), Postives = 83/131 (63.36%), Query Frame = 2 Query: 1589 SWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRG 1981 +W +RRY RELFD+P+ LKI + +AEA+EALLYGC W+ HY LR HHR+LLR++G R+ + SY L+ CQS+E T+R RRLL+AG R GRLP R+M+ L G +R RG Sbjct: 137 AWACLRRYDRELFDRPKAPFRLKIHLRQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYMRKEDTYRQLSYPQTLKRVGCQSVEATIRQRRLLFAGAFARQPDGRLPKRLMLGELAGGQKRRRG 267
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE) HSP 1 Score: 128 bits (321), Expect = 5.470e-28 Identity = 65/134 (48.51%), Postives = 87/134 (64.93%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGK 1987 A+W IRRY ++LFD+P LK R+++AEA+EALLYGC W RQ+ Y LR HHR+LLR++G QR++ + SY L+ CQS+E T+R RRLL+AG L R GRLP RVM+ L G + G + Sbjct: 289 AAWACIRRYGQDLFDKPNAPFRLKTRLLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVIGYQREKGTYRQLSYAQTLKRVGCQSVETTIRQRRLLFAGALARQPDGRLPKRVMLGELVGGEAQAGGNR 422
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5LCI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI9_9PHAE) HSP 1 Score: 124 bits (311), Expect = 5.960e-28 Identity = 64/135 (47.41%), Postives = 87/135 (64.44%), Query Frame = 2 Query: 1589 SWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 +W +RRY ELFD+P LKIR+++AEA+EALLYGC W+ HY LR HHR+LLR++G +R++ + SY L+ +CQS+E T+R RRLL AG L GRLP R+M L G +R RG +E+ Sbjct: 138 AWACLRRYGWELFDRPNAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVQCQSVEATIRQRRLLIAGALATQPDGRLPKRLMFGELAGGEKRRRGEQEQ 272
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE) HSP 1 Score: 132 bits (332), Expect = 6.420e-28 Identity = 76/191 (39.79%), Postives = 111/191 (58.12%), Query Frame = 2 Query: 1424 NVVS*RRASHDLSLTPPVECRVPEPR-PRSSHLRQLT*YGQLYGNEVTSPN*LYSASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 N+ + R+ + L + P + VP R +++ R L +G+ N A+W +RY ELFD+P SLK R+++AEA+EALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G G+G E+ Sbjct: 768 NMGNERKGVYLLGIFAPKKTAVPGQRYAQTTEFRYLGGLVNEHGDLTREINHRSKAAWACNKRYTTELFDRPGAPFSLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 958
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.450e-27 Identity = 64/135 (47.41%), Postives = 89/135 (65.93%), Query Frame = 2 Query: 1589 SWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 +W +RR RELFD+P+ LKIR+++AEA+EALLYGC W+ HY LR HHR+LLR++G +R++ + SY A + CQS+E T+R RRLL A L R GRLP R+M+ L G +R RGG+++ Sbjct: 82 AWACLRRCGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLNGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQ 216
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5L417_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L417_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.310e-27 Identity = 64/135 (47.41%), Postives = 89/135 (65.93%), Query Frame = 2 Query: 1589 SWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 +W RRY RELFD P+ LK+R+++AEA+EALLYGC W+ HY LR HHR+LLR++ +R++ + SY L+ CQS+E T+R RRLL+AG L R GRLP R+M+ L G +R +GG+E+ Sbjct: 210 AWACHRRYGRELFDTPQAPSRLKVRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIEYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGKLAGGKKRRKGGQEQ 344
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE) HSP 1 Score: 129 bits (323), Expect = 4.490e-27 Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W IRRY ELFD+P LK R+++AEA+EALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G G+G E+ Sbjct: 494 AAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 629
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE) HSP 1 Score: 124 bits (312), Expect = 4.640e-27 Identity = 69/158 (43.67%), Postives = 94/158 (59.49%), Query Frame = 2 Query: 1547 YGNEVTSPN*LYSASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEKGVD*LRTER 2020 +G+ N +W +RRY RELFD+P+ LKIR+++AEA++ALLYGC W+ HY LR HHR+LLR++G +R++ + SY L+ CQS+E T+R RRLL+AG L R GRLP R+M L G G + G D RT R Sbjct: 232 HGDLTRENNYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMDALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAG------GRSDVGGDRNRTGR 383
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 129 bits (324), Expect = 6.240e-27 Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W I+RY ELFD+P LK R+++AEA+EALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G GRG E+ Sbjct: 879 AAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQ 1014 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig990.21211.1 >prot_F-serratus_M_contig990.21211.1 ID=prot_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=polypeptide|length=113bp MRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLback to top mRNA from alignment at F-serratus_M_contig990:194761..197144+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig990.21211.1 ID=mRNA_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=mRNA|length=2384bp|location=Sequence derived from alignment at F-serratus_M_contig990:194761..197144+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig990:194761..197144+ >mRNA_F-serratus_M_contig990.21211.1 ID=mRNA_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig990:194761..197144+ (Fucus serratus male)back to top |