mRNA_F-serratus_M_contig990.21207.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig990.21207.1
Unique NamemRNA_F-serratus_M_contig990.21207.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig990.21207.1 vs. uniprot
Match: K3XBA5_GLOUD (Robl_LC7 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBA5_GLOUD)

HSP 1 Score: 104 bits (259), Expect = 2.310e-23
Identity = 50/95 (52.63%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:   13 NEVEEVIKDLKTNPGFSAYVIMNNDGIVIKYESMEYRTAVHHAALILDLASKSKKFMRELF-EPPDNEVESLRLRTREHEMIIALHDNFTLAVIQ 294
            NE++E IK LK   GFS+Y++M+NDGIV+KYE++EY+ AV HA  +L L  ++KK +++LF +P ++++E LRLRT+ HEMIIA H  FTL  +Q
Sbjct:    7 NEIDEAIKQLKAKSGFSSYLLMSNDGIVVKYENLEYKEAVMHAYHVLSLYGRTKKHLQKLFPDPSEHDIEWLRLRTKMHEMIIAQHLRFTLVALQ 101
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BLAST of mRNA_F-serratus_M_contig990.21207.1 vs. uniprot
Match: B5YP30_THAPS (Predicted protein n=2 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YP30_THAPS)

HSP 1 Score: 100 bits (250), Expect = 3.150e-22
Identity = 51/101 (50.50%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:   10 VNEVEEVIKDLKTNPGFSAYVIMNNDGIVIKYES----MEYRTAVHHAALILDLASKSKKFMRELFEPPDNEVESLRLRTREHEMIIALHDNFTLAVIQQD 300
            VNE++ ++KDLK  PGF AY+I+N+DGIVI+++     M Y+ AV HA  I +L  KSK  ++ELF+P D  VE++R+RT E+E+II+ +  FTLAV Q+D
Sbjct:    6 VNEIDVLLKDLKKTPGFKAYLILNSDGIVIRWDQVGKQMPYQRAVQHAHHITELYIKSKAHVQELFDPQDRHVENVRVRTEEYEIIISSYGAFTLAVFQED 106
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BLAST of mRNA_F-serratus_M_contig990.21207.1 vs. uniprot
Match: F0W7H7_9STRA (Uncharacterized protein AlNc14C30G2783 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7H7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.770e-19
Identity = 48/97 (49.48%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:   13 NEVEEVIKDLKTNPGFSAYVIMNNDGIVIKYESMEYRTAVHHAALILDLASKSKKFMRELFEPP---DNEVESLRLRTREHEMIIALHDNFTLAVIQ 294
            NE++E IK LK+ PGF+AYVIM+NDGIV++YE++EYR AV +A  +L L S++++ + ++       + E+E LRL+T+ HEMIIA H  +TL V+Q
Sbjct:    7 NEIDEAIKQLKSKPGFAAYVIMSNDGIVVRYENLEYREAVMYAYHVLALYSRTRRQVAKIMGSALQENEELEWLRLKTKLHEMIIAQHLRYTLVVLQ 103
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BLAST of mRNA_F-serratus_M_contig990.21207.1 vs. uniprot
Match: A0A024G6W6_9STRA (Robl_LC7 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6W6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.440e-19
Identity = 47/97 (48.45%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:   13 NEVEEVIKDLKTNPGFSAYVIMNNDGIVIKYESMEYRTAVHHAALILDLASKSKKFMRELFEPP---DNEVESLRLRTREHEMIIALHDNFTLAVIQ 294
            NE++E IK LK+ PGF+AY+IM+NDGIV++YE++EYR AV +A  +L L ++++K + ++         E+E LRL+T+ HEMIIA H  +TL V+Q
Sbjct:    7 NEIDEAIKQLKSKPGFAAYLIMSNDGIVVRYENLEYREAVMYAYHVLALYARARKQVAKIMGSTLQESEEMEWLRLKTKLHEMIIAQHLRYTLVVLQ 103
[Close]
BLAST of mRNA_F-serratus_M_contig990.21207.1 vs. uniprot
Match: A0A6U1KG54_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1KG54_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.490e-18
Identity = 45/100 (45.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   10 VNEVEEVIKDLKTNPGFSAYVIMNNDGIVIKYESMEY--RTAVHHAALILDLASKSKKFMRELFEPPDNEVESLRLRTREHEMIIALHDNFTLAVIQQDP 303
            V+ V+EVI  +K   GF  +VI NNDG+V+++E++    +  +HHA   LDL +K++  +R LFE P+NE+ES+RL+T  +EMII+   N+TL V+Q+ P
Sbjct:    5 VHPVDEVINKMKEVEGFGGFVICNNDGVVLRHENLGAADKLGIHHAYHALDLMNKARDHIRTLFEAPENELESVRLKTDNYEMIISQVGNYTLCVMQKPP 104
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig990.21207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3XBA5_GLOUD2.310e-2352.63Robl_LC7 domain-containing protein n=1 Tax=Globisp... [more]
B5YP30_THAPS3.150e-2250.50Predicted protein n=2 Tax=Thalassiosira pseudonana... [more]
F0W7H7_9STRA1.770e-1949.48Uncharacterized protein AlNc14C30G2783 n=1 Tax=Alb... [more]
A0A024G6W6_9STRA6.440e-1948.45Robl_LC7 domain-containing protein n=1 Tax=Albugo ... [more]
A0A6U1KG54_9STRA3.490e-1845.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig990contigF-serratus_M_contig990:113174..115339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.8e-31
Seed eggNOG ortholog2880.D8LQT2
KEGG koko:K10419
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
Ec32 ortholog descriptionDynein light chain-related
Ec32 orthologEc-24_002180.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Exons4
Model size1210
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig990.21207.1prot_F-serratus_M_contig990.21207.1Fucus serratus malepolypeptideF-serratus_M_contig990 114009..115264 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932786.3770683-UTR-F-serratus_M_contig990:113173..1140081622932786.3770683-UTR-F-serratus_M_contig990:113173..114008Fucus serratus maleUTRF-serratus_M_contig990 113174..114008 -
1690964474.9080975-UTR-F-serratus_M_contig990:113173..1140081690964474.9080975-UTR-F-serratus_M_contig990:113173..114008Fucus serratus maleUTRF-serratus_M_contig990 113174..114008 -
1622932786.5106037-UTR-F-serratus_M_contig990:115264..1153391622932786.5106037-UTR-F-serratus_M_contig990:115264..115339Fucus serratus maleUTRF-serratus_M_contig990 115265..115339 -
1690964474.9797544-UTR-F-serratus_M_contig990:115264..1153391690964474.9797544-UTR-F-serratus_M_contig990:115264..115339Fucus serratus maleUTRF-serratus_M_contig990 115265..115339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932786.4024808-CDS-F-serratus_M_contig990:114008..1140861622932786.4024808-CDS-F-serratus_M_contig990:114008..114086Fucus serratus maleCDSF-serratus_M_contig990 114009..114086 -
1690964474.9253476-CDS-F-serratus_M_contig990:114008..1140861690964474.9253476-CDS-F-serratus_M_contig990:114008..114086Fucus serratus maleCDSF-serratus_M_contig990 114009..114086 -
1622932786.4234746-CDS-F-serratus_M_contig990:114501..1145911622932786.4234746-CDS-F-serratus_M_contig990:114501..114591Fucus serratus maleCDSF-serratus_M_contig990 114502..114591 -
1690964474.9409318-CDS-F-serratus_M_contig990:114501..1145911690964474.9409318-CDS-F-serratus_M_contig990:114501..114591Fucus serratus maleCDSF-serratus_M_contig990 114502..114591 -
1622932786.4591293-CDS-F-serratus_M_contig990:114859..1149781622932786.4591293-CDS-F-serratus_M_contig990:114859..114978Fucus serratus maleCDSF-serratus_M_contig990 114860..114978 -
1690964474.9520354-CDS-F-serratus_M_contig990:114859..1149781690964474.9520354-CDS-F-serratus_M_contig990:114859..114978Fucus serratus maleCDSF-serratus_M_contig990 114860..114978 -
1622932786.4811192-CDS-F-serratus_M_contig990:115251..1152641622932786.4811192-CDS-F-serratus_M_contig990:115251..115264Fucus serratus maleCDSF-serratus_M_contig990 115252..115264 -
1690964474.9637434-CDS-F-serratus_M_contig990:115251..1152641690964474.9637434-CDS-F-serratus_M_contig990:115251..115264Fucus serratus maleCDSF-serratus_M_contig990 115252..115264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig990.21207.1

>prot_F-serratus_M_contig990.21207.1 ID=prot_F-serratus_M_contig990.21207.1|Name=mRNA_F-serratus_M_contig990.21207.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MNNDGIVIKYESMEYRTAVHHAALILDLASKSKKFMRELFEPPDNEVESL
RLRTREHEMIIALHDNFTLAVIQQDPSAKKKAAKEGADDVEEEEEEKKE*
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mRNA from alignment at F-serratus_M_contig990:113174..115339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig990.21207.1 ID=mRNA_F-serratus_M_contig990.21207.1|Name=mRNA_F-serratus_M_contig990.21207.1|organism=Fucus serratus male|type=mRNA|length=2166bp|location=Sequence derived from alignment at F-serratus_M_contig990:113174..115339- (Fucus serratus male)
TCCCAGCATGTGAACGAAGTCGAGGAGGTAATCAAGGACCTCAAGACCAA
TCCAGGATTTTCGGCGTACGTTATCATGAACAACGACGGTAAGCGACAAA
TGAGCCAGGGCTTCGACATTGTTGGTGTTCGTAAATGGGGCAAAGCAATC
AAGCCCGGCTTACTGATTTTTAGGTGAAACGTCGAGCGAAAGACACGTCC
ATTTTTTGGGTCCTAGCCAATACGAGAAGTACTGTTTATGGCTTTAGTAT
ATACCCGCAACACTCTGCATCGTGCTTTTTTGTCTAAAGGGAGGGCATGT
GTTTGTGTGCACACGCTCTACTCTCGATGTCCACTTCTTTCCTTGCTGGG
ACACAACACAGGGATAGTGATCAAGTACGAGAGCATGGAATACCGAACAG
CCGTGCACCACGCTGCTTTGATCCTTGACCTCGCCAGCAAATCGAAGAAG
TTCATGCGAGAGCTTTTCGAACCACCAGATGTAAGCCTATGGACAGCGAT
TGTCCGTCCCCCCATGCCCGAAAAAGAAAGAAAGCTTGCAAAGCGAAACG
CTTCCTCTACTCGGTGTTCTATATTTTGACAAAATATCTGTAGGAAACAG
TATTCTTCGTCTCGAGCAACTCGACCCAGAGAATGAGACTCATCATGCAG
GCAGTAATGTCACGATAGATCTTGGCCCCGGCTTCCTTCTAACCTCCCCT
CCCTCACACACACAAACACTTGACATCTATTATCTGTGTTGTGCGCAGAA
CGAGGTCGAATCGTTGAGATTGCGAACGAGAGAACATGAGATGATAATCG
CTCTGCACGACAACTTCACCCTAGCAGTGATACAGCAGGTTAGTCGATAT
TATTCTTGTTCGTCGAAACCCGCTACGCGGTTCGCTATTATAGCCCGATT
GACATTTCAGGAGTACCCTCCTCGCCGTCAGTTAAACGAAGGACCCGCCT
TGATTACAAAGAAACAAGCTGGAGATTGTTCGGTCTCTGTGATGTCAAAA
CCAAAATAACTATATCCCTGTGAGCATGCCTACAGCCTCGGACGGGGATT
TTTTGCAAGGGTTGAACATACCGCGACTCGCGCGCAAGATCGGCAAGGTG
CCGCCCGCTGACGTAGCTTTGGTTAGTCCACGTGCAATCCTTGCTTGCCG
TGCTCTGAGCCCATTAGTTACATTTTAATACCGTGGTGCATGGGGATATC
TTCGAGCCATTTCTCCCGACCCACGCTTCCGACCCCTGGCACTCTCTCCG
AAGGATCCAAGCGCGAAAAAGAAGGCCGCGAAAGAGGGAGCAGACGACGT
CGAGGAGGAAGAAGAAGAAAAGAAAGAATGATGGATACCATACGCTATTG
CTTGTTAATCGTCATTTTTTCAGTTCGCTTTGTACAATCGTCCTTGCAGG
GTGCACACGCACTACTTCCAGATGCCAGGCACCTCACCGATGTCGTCGGG
TGGCTTTCCGAGTTAGGCAGGGAGTCATGGCATTCCCGACGTGAAATGTT
TCCTCTCAAAAAGAGAGATTATTCGAGGCAGTGCCGGCCAAATTGTACTG
CGTCTGCGCGACTCTCGTCAGTTCTGATCGACTCGGCGTTTTAGGGCCCG
GTCATAAATGGCATTCCCGTTTTCTGTTTTCCATTTGGAAATATTCCAAA
ATCTCCACATATCTTGTAGTCGTTCGTTTGGATTAAAAATCTTTTTAGAC
GTCCTCAACCCTCGGAAAATCGCAGGCGCTCGTTTTCATGCCACAGCGAC
CACAGAGAATTTTTAGCTAATTGTAGACCTTAGACATATCAGCTTTTTCG
TGCCCGATGAGCTTCACGTGCCTGACGTGGGCTCCACCTAGTTTCATCCT
ACGGCATGCATGGAATATGACGACTGTGGCTGGTGTGGCGCGGATACTCA
TCAGAGAAGTACCCCAAGAAACTGCGAATATGAGACAATCGGTGTTATAC
ATATATTATACTGATTGACTTCCGATCACACTGCTGCTGCAGAAAACTTG
TTCTCTGGGGCTCGCGGTGATGCCAAATCTTCGGGTGTCGGGTAGACGGG
TGTAAAAAAAGTAAGTCCGCAGCGAGTCTCGGGCATCGGTGTAAGCTTGT
AGCCGCCTCGCCATTGATTCGCGTGGGGTGGAGCATTATGATCACGAACG
AGGTGTTTGAAGATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig990:113174..115339-

>mRNA_F-serratus_M_contig990.21207.1 ID=mRNA_F-serratus_M_contig990.21207.1|Name=mRNA_F-serratus_M_contig990.21207.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig990:113174..115339- (Fucus serratus male)
ATGAACAACGACGATGAACAACGACGGGATAGTGATCAAGTACGAGAGCA
TGGAATACCGAACAGCCGTGCACCACGCTGCTTTGATCCTTGACCTCGCC
AGCAAATCGAAGAAGTTCATGCGAGAGCTTTTCGAACCACCAGATGGATA
GTGATCAAGTACGAGAGCATGGAATACCGAACAGCCGTGCACCACGCTGC
TTTGATCCTTGACCTCGCCAGCAAATCGAAGAAGTTCATGCGAGAGCTTT
TCGAACCACCAGATAACGAGGTCGAATCGTTGAGATTGCGAACGAGAGAA
CATGAGATGATAATCGCTCTGCACGACAACTTCACCCTAGCAGTGATACA
GCAGAACGAGGTCGAATCGTTGAGATTGCGAACGAGAGAACATGAGATGA
TAATCGCTCTGCACGACAACTTCACCCTAGCAGTGATACAGCAGGATCCA
AGCGCGAAAAAGAAGGCCGCGAAAGAGGGAGCAGACGACGTCGAGGAGGA
AGAAGAAGAAAAGAAAGAATGAGATCCAAGCGCGAAAAAGAAGGCCGCGA
AAGAGGGAGCAGACGACGTCGAGGAGGAAGAAGAAGAAAAGAAAGAATGA
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