|
Homology
BLAST of mRNA_F-serratus_M_contig99.21203.1 vs. uniprot
Match: A5BXV5_VITVI (JmjC domain-containing protein n=2 Tax=Vitis TaxID=3603 RepID=A5BXV5_VITVI) HSP 1 Score: 401 bits (1030), Expect = 9.130e-128 Identity = 208/424 (49.06%), Postives = 275/424 (64.86%), Query Frame = 1
Query: 22 HPYGVEPLGNIFLRRSS-DCRPGGLGKLAILDDERMLDLMGYMDLSSLGRLAVVSRATYVYAHVDDLWKALVVQEMWRRPGQGVQTRGGWKTTLRYILGGTSAADGDPRVSNHVPLKVSGFFSDLLFQPYHCATAALRPEWISRNTVDRRVGISPSDFRRLYEEPNRPVVLTDAAKSWPALEKWTRSKLLAEHRDLRLHAGGLEIALKDYLRYAEESKDELPLYVFDKKFVDKCPALGQDYDVPDVFPEDLLSVLGDEQRPDHRWLIAGPARSGSSFHVDPNCTSAWNATVSGKKKWILFPPGETPPGVHPSEDGLDLAAPVSLMEWFLNFYEECHDPGRKVCPLECVVSAGEVVFVPMGWWHCVINLEWSVAITQNFVSRVNLPNVIRFLL--TKKHLISGLPPDQRLDLGERFVSALTAKRP 1284
H YGV+PLGN++ SS + R GLG L IL DE +L+++G++D + LG LA VS++ YV+ + + LW+ LV+ + G G WK+T + A G + L V F+SD LFQ + CA ++ EW+ R+ + RR GIS DF +EEPNRPV+L +W ALEKW R+ L+ D++ G +E+ L+DY RY++ ++E PLY+FD KF +K P LG +YDVP F EDL SVLG+E RPD+RW+I GPA SGSSFH+DPN TSAWNA + G KKW+LFPP PPGVHPS DG ++A PVS++EWF+NFY +K P+ECV AGEV+FVP GWWH VINLE S+AITQNFVSR NL NV+ FL L+SG R++L E+F A+ A P
Sbjct: 61 HKYGVQPLGNLYFSPSSFNSRNSGLGALQILTDELVLEILGFLDGAHLGVLATVSKSFYVFTNHEPLWRNLVLDNL----VGGFLYNGSWKSTYVAAFYPSFACAGS------LVLNVRDFYSDYLFQSWLCANLEMKSEWLERDNITRRKGISIEDFVLNFEEPNRPVLLEGCLDNWVALEKWNRNYLIETCGDVKFSVGPVEMKLEDYFRYSDLVREERPLYLFDPKFGEKVPKLGLEYDVPVYFKEDLFSVLGNE-RPDYRWIIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWVLFPPEVVPPGVHPSPDGAEVACPVSIVEWFMNFYGATKKWKKK--PIECVCKAGEVIFVPNGWWHLVINLEDSIAITQNFVSRRNLLNVLDFLKKPNASMLVSGTR--DRVNLYEKFRKAIEATFP 469
BLAST of mRNA_F-serratus_M_contig99.21203.1 vs. uniprot
Match: A0A1S4DJP0_TOBAC (F-box protein At5g06550-like n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S4DJP0_TOBAC) HSP 1 Score: 401 bits (1030), Expect = 1.040e-127 Identity = 204/422 (48.34%), Postives = 280/422 (66.35%), Query Frame = 1
Query: 28 YGVEPLGNIFLRRS-SDCRPGGLGKLAILDDERMLDLMGYMDLSSLGRLAVVSRATYVYAHVDDLWKALVVQEMWRRPGQGVQTRGGWKTTLRYILGGTSAADGDPRVSNHVPLKVSGFFSDLLFQPYHCATAALRPEWISRNTVDRRVGISPSDFRRLYEEPNRPVVLTDAAKSWPALEKWTRSKLLAEHRDLRLHAGGLEIALKDYLRYAEESKDELPLYVFDKKFVDKCPALGQDYDVPDVFPEDLLSVLGDEQRPDHRWLIAGPARSGSSFHVDPNCTSAWNATVSGKKKWILFPPGETPPGVHPSEDGLDLAAPVSLMEWFLNFYEECHDPGRKVCPLECVVSAGEVVFVPMGWWHCVINLEWSVAITQNFVSRVNLPNVIRFLLTKKH--LISGLPPDQRLDLGERFVSALTAKRP 1284
YGV+PLGN++ S + R GLG L L DE +LD++G ++ + LG L+ VS+ Y++ + + LW+ LV++ G +G WK+T S P +S+ LKV F+SD LFQ + CA ++PEW+ ++ + RR GIS +F +EEPN+PV+L +SWPALEKW R L E D++ G +E+ L+DY Y++++++E PLY+FD KF +K P LG+DYDVP F EDL SVLG+E RPD+RW+I GPA SGSSFH+DPN TSAWNA + G KKW+LFPP PPGVHPS DG ++A+PVS++EWF+NFY + ++ P+ECV AGEV+FVP GWWH VINLE S+AITQNFVSR NL NV+ FL L+SG R++L ++F +A+ A P
Sbjct: 67 YGVQPLGNLYFNPSYHNSRNTGLGNLQTLTDELVLDILGLLEGTHLGILSNVSKGFYIFCNHEPLWRNLVLETC----KGGFFFKGSWKSTFVSAYKQPSF----PVLSSG--LKVRDFYSDYLFQSWLCANLEMKPEWLEKDNIVRRRGISVDEFVMNFEEPNKPVLLEGCLESWPALEKWNRDYLAEECGDVKFSVGPVEMKLEDYFSYSDQAREEKPLYLFDPKFAEKVPQLGKDYDVPMYFNEDLFSVLGNE-RPDYRWIIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWVLFPPDVVPPGVHPSPDGAEVASPVSIIEWFMNFYNATKNWKKR--PIECVCKAGEVIFVPNGWWHLVINLEDSIAITQNFVSRRNLLNVLEFLKKPNACTLVSGT--SDRVNLHDKFKNAIEAYLP 473
BLAST of mRNA_F-serratus_M_contig99.21203.1 vs. uniprot
Match: Q2R2A5_ORYSJ (Os11g0572800 protein n=13 Tax=Oryza TaxID=4527 RepID=Q2R2A5_ORYSJ) HSP 1 Score: 401 bits (1030), Expect = 1.420e-127 Identity = 209/425 (49.18%), Postives = 273/425 (64.24%), Query Frame = 1
Query: 34 VEPLGNIFLRRSS-DCRPGGLGKLAILDDERMLDLMGYMDLSSLGRLAVVSRATYVYAHVDDLWKALVVQEMWRRPGQGVQTRGGWKTTLRYILGGTSAADGDPRVSNHVP---LKVSGFFSDLLFQPYHCATAALRPEWISRNTVDRRVGISPSDFRRLYEEPNRPVVLTDAAKSWPALEKWTRSKLLAEHRDLRLHAGGLEIALKDYLRYAEESKDELPLYVFDKKFVDKCPALGQDYDVPDVFPEDLLSVLGDEQRPDHRWLIAGPARSGSSFHVDPNCTSAWNATVSGKKKWILFPPGETPPGVHPSEDGLDLAAPVSLMEWFLNFYEECHDPGRKVCPLECVVSAGEVVFVPMGWWHCVINLEWSVAITQNFVSRVNLPNVIRFLL--TKKHLISGLPPDQRLDLGERFVSALTAKRPDL 1290
V+PLGN+ L + R GLG L L D+ +LD++G + L RL+ SRA YV A D LW+ALV+ E+ G G W+ T YI +AA G H+P L++ GF+SD LFQ + CA +RPEW+ R+T+DRR G+S F +EEPNRPV+L +SWPAL+KWTR LL G + + L YL+YA+ ++E PLY+FD KF +K P +G+DY+VP F EDL VLG E+RPDHRW+I GPA SGSSFHVDPN TSAWNA + G KKW++FPP PPGVHPS DG ++ +PVS+MEWF+NFY C ++ P+EC+ AGEVVFVP GWWH VINLE S+AITQN+VSR NL NV+ FL L+SG R++L ++F +A+ P +
Sbjct: 78 VQPLGNLLLLGGGGNLRDAGLGALRPLPDDVLLDVLGLLAARDLARLSAASRALYVVASHDPLWRALVLDEL----GGDFAFSGSWRAT--YI----AAASGGRA---HLPPRGLEIRGFYSDYLFQSWLCANMEMRPEWLHRDTIDRRRGMSVEQFVSEFEEPNRPVLLEGCLESWPALQKWTREHLLKVSAGKEFAVGPVSMTLDRYLQYADNVQEERPLYLFDAKFTEKVPEMGRDYEVPAYFREDLFGVLG-EERPDHRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADGAEVTSPVSIMEWFMNFYGACKTWEKR--PVECICRAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASELVSGTT--DRVNLHDKFRNAIDMTYPGM 484
BLAST of mRNA_F-serratus_M_contig99.21203.1 vs. uniprot
Match: A0A4D6MNE9_VIGUN (F-box and leucine-rich repeat protein 10/11 n=6 Tax=Phaseoleae TaxID=163735 RepID=A0A4D6MNE9_VIGUN) HSP 1 Score: 400 bits (1029), Expect = 1.770e-127 Identity = 210/428 (49.07%), Postives = 280/428 (65.42%), Query Frame = 1
Query: 22 HPYGVEPLGNIFLRRSS-DCRPGGLGKLAILDDERMLDLMGYMDLSSLGRLAVVSRATYVYAHVDDLWKALVVQEMWRRPGQGVQTRGGWKTTLRYILGGTSAADGDPRVSNHV----PLKVSGFFSDLLFQPYHCATAALRPEWISRNTVDRRVGISPSDFRRLYEEPNRPVVLTDAAKSWPALEKWTRSKLLAEHRDLRLHAGGLEIALKDYLRYAEESKDELPLYVFDKKFVDKCPALGQDYDVPDVFPEDLLSVLGDEQRPDHRWLIAGPARSGSSFHVDPNCTSAWNATVSGKKKWILFPPGETPPGVHPSEDGLDLAAPVSLMEWFLNFYEECHDPGRKVCPLECVVSAGEVVFVPMGWWHCVINLEWSVAITQNFVSRVNLPNVIRFLL--TKKHLISGLPPDQRLDLGERFVSALTAKRP 1284
H +GV+PLGN++L SS + R GLG L IL DE +LD++G++D SSLG L+ VS++ YV+ + + LWK LV++ G Q +G WK+T Y+ SA P +N KV F+SD LFQ + CA ++PEW+ R+ V R+ GIS +F +EEPNRPV+L +W AL W R L+ D++ G +E+ L DY Y+++ ++E PLY+FD KF +K P LG +Y+VP F EDL VLG+E RPD+RW+I GPA SGSSFHVDPN TSAWNA + G KKWILFPP PPGVHPS DG D+A+PVS++EWF+NFY + +K P+ECV AGEV+FVP GWWH VINLE S+AITQN+VSR NL V+ FL L+SG R++L ++F +A+ A P
Sbjct: 69 HTHGVQPLGNLYLNPSSVNSRDTGLGNLHILSDELVLDMLGFLDASSLGVLSAVSKSFYVFTNHEPLWKNLVLENFL----SGFQYKGSWKST--YV----SACY--PSFANSAIALRGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNRPVLLEGCIDNWSALGNWDRDYLVRLSGDVKFSVGPVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFGVLGNE-RPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNWKKK--PIECVCKAGEVIFVPSGWWHLVINLEESIAITQNYVSRRNLVKVLDFLKRPNASTLVSGTR--DRVNLYDKFKNAIEASFP 479
BLAST of mRNA_F-serratus_M_contig99.21203.1 vs. uniprot
Match: A0A1Y1I8P8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I8P8_KLENI) HSP 1 Score: 404 bits (1037), Expect = 1.950e-127 Identity = 218/485 (44.95%), Postives = 291/485 (60.00%), Query Frame = 1
Query: 1 SKQIDRG-HPYGVEPLGNIFLRRSS-DCRPGGLGKLAILDDERMLDLMGYMDLSSLGRLAVVSRATYVYAHVDDLWKALVVQEMWRRPGQGVQTRGGWKTT-LRYILGGTSAADGDPRVSN-------------------------------------HVPLKVSGFFSDLLFQPYHCATAALRPEWISRNTVDRRVGISPSDFRRLYEEPNRPVVLTDAAKSWPALEKWTRSKLLAEHRDLRLHAGGLEIALKDYLRYAEESKDELPLYVFDKKFVDKCPALGQDYDVPDVFPEDLLSVLGDEQRPDHRWLIAGPARSGSSFHVDPNCTSAWNATVSGKKKWILFPPGETPPGVHPSEDGLDLAAPVSLMEWFLNFYEECHDPGRKVCPLECVVSAGEVVFVPMGWWHCVINLEWSVAITQNFVSRVNLPNVIRFLL--TKKHLISGLPPDQRLDLGERFVSALTAKRPD----LGAEEMARRA 1317
S +++ G HPYGV P+GN++ ++ + R GLG+L L DE++LD++G +D L R+A VS++ YV+AH D+LW+AL +QE G GWK T + ++L T A+ +P S+ H PL+VSGF+SD LFQ + CA+ +++ EW+ R+TV RR +S F +E PNRPV++TD K WPA +KW R LL D + G +E L +Y Y + +++E PLY+FD KF +K P L DY+VP+ F EDL +LGD+ RPD RWLI GPARSGSS+H+DPN TSAWNA + G KKWIL+PP TPPGV PS DG D+ APVS+ EWF+NFY+E G + PLEC+ AGEV+FVP GWWH VINLE SVA+TQN+VSR N+ + FL K L+SG R L F +A K P L AE A +A
Sbjct: 79 SYELENGSHPYGVRPMGNMYFEKAEVNVRDAGLGELCNLSDEQVLDILGRLDSKDLSRVAQVSKSLYVFAHHDELWRALTLQEF---SGGFSYAPEGWKQTFVTHLLNAT--ANPNPNTSSRPQLHSLQQDPPANGARQSGKEERSLQASALGTAIAVHKPLQVSGFYSDYLFQSWLCASISVKQEWLERSTVPRRSNLSLQQFIDDFERPNRPVIITDVVKEWPAFQKWDREYLLKAVGDEKFACGPVEFTLDEYHAYGDWAREERPLYLFDSKFGEKVPQLVADYEVPEYFREDLFGLLGDK-RPDFRWLIIGPARSGSSWHIDPNSTSAWNAVIRGSKKWILYPPNMTPPGVRPSADGADVVAPVSIAEWFMNFYDETRQ-GDAMRPLECICRAGEVLFVPRGWWHTVINLEESVAVTQNYVSRRNILETLSFLARPNAKDLVSGTR--DRESLHGAFKAAFENKFPGELERLEAEAAAEKA 554
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 676.8 |
Seed ortholog evalue | 7.5e-192 |
Seed eggNOG ortholog | 2880.D8LEI9 |
KEGG ko | ko:K11323 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000976,GO:0000987,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0010029,GO:0010030,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018193,GO:0018195,GO:0018216,GO:0019538,GO:0032259,GO:0034969,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043565,GO:0043985,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0051276,GO:0065007,GO:0071704,GO:0071840,GO:0097159,GO:1900140,GO:1901363,GO:1901564,GO:1990837,GO:2000026 |
EggNOG free text desc. | peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine |
EggNOG OGs | KOG2130@1,KOG2130@2759 |
Ec32 ortholog description | Jumonji and F-box domain protein |
Ec32 ortholog | Ec-21_004490.1 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko01000,ko03036 |
Exons | 9 |
Model size | 2454 |
Cds size | 1446 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932785.356319-UTR-F-serratus_M_contig99:851472..852357 | 1622932785.356319-UTR-F-serratus_M_contig99:851472..852357 | Fucus serratus male | UTR | F-serratus_M_contig99 851473..852357 - |
1690964474.366654-UTR-F-serratus_M_contig99:851472..852357 | 1690964474.366654-UTR-F-serratus_M_contig99:851472..852357 | Fucus serratus male | UTR | F-serratus_M_contig99 851473..852357 - |
1622932785.5352454-UTR-F-serratus_M_contig99:857547..857556 | 1622932785.5352454-UTR-F-serratus_M_contig99:857547..857556 | Fucus serratus male | UTR | F-serratus_M_contig99 857548..857556 - |
1690964474.476423-UTR-F-serratus_M_contig99:857547..857556 | 1690964474.476423-UTR-F-serratus_M_contig99:857547..857556 | Fucus serratus male | UTR | F-serratus_M_contig99 857548..857556 - |
1622932785.5574353-UTR-F-serratus_M_contig99:858108..858222 | 1622932785.5574353-UTR-F-serratus_M_contig99:858108..858222 | Fucus serratus male | UTR | F-serratus_M_contig99 858109..858222 - |
1690964474.493503-UTR-F-serratus_M_contig99:858108..858222 | 1690964474.493503-UTR-F-serratus_M_contig99:858108..858222 | Fucus serratus male | UTR | F-serratus_M_contig99 858109..858222 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932785.3799372-CDS-F-serratus_M_contig99:852357..852742 | 1622932785.3799372-CDS-F-serratus_M_contig99:852357..852742 | Fucus serratus male | CDS | F-serratus_M_contig99 852358..852742 - |
1690964474.3807971-CDS-F-serratus_M_contig99:852357..852742 | 1690964474.3807971-CDS-F-serratus_M_contig99:852357..852742 | Fucus serratus male | CDS | F-serratus_M_contig99 852358..852742 - |
1622932785.3969917-CDS-F-serratus_M_contig99:853109..853276 | 1622932785.3969917-CDS-F-serratus_M_contig99:853109..853276 | Fucus serratus male | CDS | F-serratus_M_contig99 853110..853276 - |
1690964474.3915884-CDS-F-serratus_M_contig99:853109..853276 | 1690964474.3915884-CDS-F-serratus_M_contig99:853109..853276 | Fucus serratus male | CDS | F-serratus_M_contig99 853110..853276 - |
1622932785.4157157-CDS-F-serratus_M_contig99:853781..854036 | 1622932785.4157157-CDS-F-serratus_M_contig99:853781..854036 | Fucus serratus male | CDS | F-serratus_M_contig99 853782..854036 - |
1690964474.400303-CDS-F-serratus_M_contig99:853781..854036 | 1690964474.400303-CDS-F-serratus_M_contig99:853781..854036 | Fucus serratus male | CDS | F-serratus_M_contig99 853782..854036 - |
1622932785.4350197-CDS-F-serratus_M_contig99:854825..854945 | 1622932785.4350197-CDS-F-serratus_M_contig99:854825..854945 | Fucus serratus male | CDS | F-serratus_M_contig99 854826..854945 - |
1690964474.4102561-CDS-F-serratus_M_contig99:854825..854945 | 1690964474.4102561-CDS-F-serratus_M_contig99:854825..854945 | Fucus serratus male | CDS | F-serratus_M_contig99 854826..854945 - |
1622932785.4582736-CDS-F-serratus_M_contig99:855197..855291 | 1622932785.4582736-CDS-F-serratus_M_contig99:855197..855291 | Fucus serratus male | CDS | F-serratus_M_contig99 855198..855291 - |
1690964474.4231098-CDS-F-serratus_M_contig99:855197..855291 | 1690964474.4231098-CDS-F-serratus_M_contig99:855197..855291 | Fucus serratus male | CDS | F-serratus_M_contig99 855198..855291 - |
1622932785.477339-CDS-F-serratus_M_contig99:855766..855945 | 1622932785.477339-CDS-F-serratus_M_contig99:855766..855945 | Fucus serratus male | CDS | F-serratus_M_contig99 855767..855945 - |
1690964474.4338226-CDS-F-serratus_M_contig99:855766..855945 | 1690964474.4338226-CDS-F-serratus_M_contig99:855766..855945 | Fucus serratus male | CDS | F-serratus_M_contig99 855767..855945 - |
1622932785.492105-CDS-F-serratus_M_contig99:856648..856777 | 1622932785.492105-CDS-F-serratus_M_contig99:856648..856777 | Fucus serratus male | CDS | F-serratus_M_contig99 856649..856777 - |
1690964474.4530032-CDS-F-serratus_M_contig99:856648..856777 | 1690964474.4530032-CDS-F-serratus_M_contig99:856648..856777 | Fucus serratus male | CDS | F-serratus_M_contig99 856649..856777 - |
1622932785.51263-CDS-F-serratus_M_contig99:857430..857547 | 1622932785.51263-CDS-F-serratus_M_contig99:857430..857547 | Fucus serratus male | CDS | F-serratus_M_contig99 857431..857547 - |
1690964474.465856-CDS-F-serratus_M_contig99:857430..857547 | 1690964474.465856-CDS-F-serratus_M_contig99:857430..857547 | Fucus serratus male | CDS | F-serratus_M_contig99 857431..857547 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig99.21203.1 >prot_F-serratus_M_contig99.21203.1 ID=prot_F-serratus_M_contig99.21203.1|Name=mRNA_F-serratus_M_contig99.21203.1|organism=Fucus serratus male|type=polypeptide|length=482bp
MLDLMGYMDLSSLGRLAVVSRATYVYAHVDDLWKALVVQEMWRRPGQGVQ TRGGWKTTLRYILGGTSAADGDPRVSNHVPLKVSGFFSDLLFQPYHCATA ALRPEWISRNTVDRRVGISPSDFRRLYEEPNRPVVLTDAAKSWPALEKWT RSKLLAEHRDLRLHAGGLEIALKDYLRYAEESKDELPLYVFDKKFVDKCP ALGQDYDVPDVFPEDLLSVLGDEQRPDHRWLIAGPARSGSSFHVDPNCTS AWNATVSGKKKWILFPPGETPPGVHPSEDGLDLAAPVSLMEWFLNFYEEC HDPGRKVCPLECVVSAGEVVFVPMGWWHCVINLEWSVAITQNFVSRVNLP NVIRFLLTKKHLISGLPPDQRLDLGERFVSALTAKRPDLGAEEMARRALL VAVDGRNQSNRRGLKNTAVHRREDDVNKKPRLWAKLKQGAAAVEPSTDDG SNGEGRAAGGERSKTGVEGSGSNDFSFGFSF* back to topmRNA from alignment at F-serratus_M_contig99:851473..858222- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig99.21203.1 ID=mRNA_F-serratus_M_contig99.21203.1|Name=mRNA_F-serratus_M_contig99.21203.1|organism=Fucus serratus male|type=mRNA|length=6750bp|location=Sequence derived from alignment at F-serratus_M_contig99:851473..858222- (Fucus serratus male) TCGAAACAGATCGATCGTGGCCACCCTTACGGTGTGGAGCCGCTGGGCAA
CATCTTCTTGAGGCGGAGTTCCGACTGCCGACCCGGGGGCCTAGGGAAGC
TTGCGATCCTGGACGTGAGCGAAGCCTGGTTTTTATTTTCTTTCGTTCCA
ACAGTAGTGTACGTTTTACGGAGCACGTTAAAGCTCTTATGCAAGAAGGA
GTGCGTCTTCTTGTGGCGAGGGAGGGCGGTTTTGTGAGTGTCTTACCGTT
GTGCTACCTATCTTAAAACGATATTTTCTTGGGAAGCATCGAGCCTCTCA
GGTGTGTGTCATATTTTATTATACTGCAGATTTATACTGCTGATCCGCCC
TACGTTAACGATTCATGAGCGGACGAACATACTTCTTTCCGGAGACTGGT
ACGGCGGCCATACTCTTGCCGGCGCCTAGATCCGCTCTCTCATGCGATGC
TGCGGGCGATGTGTAATTCGTATCGATCAGAAAGTACGCGTGGCAGATAT
ACTTACAGTTGAAGAGGGAAATTATAAGGTAGTTCTACTCCAAAGTACTG
TATAGTACCATACTGTGTAGTGTACATATACATACAGTGTGTGGTACTTT
TCCAGAAACGTTTTGGTAACCATTTATCTGTCTTGTATCGCCGTTCGCTT
CACCACCACTTGGTAGGATGAGAGAATGCTAGACTTGATGGGGTATATGG
ACTTGTCATCCCTCGGCCGCCTGGCGGTCGTGAGCCGCGCTACGTACGTG
TACGCTCACGTGGACGACCTGTGGAAAGCTCTCGTGGTGCAGGTAAAACG
CACGAGACGGTGCCGTACTGTGCTCTACTCCGACCCCCCCGCCTAGCTTG
ATTGCTGAGCTTAGTTCAATAACAAAGTATTCGGCATGAAGAAGATCTTC
TGCAAGGAAAATATATTTAGTCTAAATATATAACAACATATCTATTGTCT
CGTAATCAGTAGAAAGTTATCGTGGAGATCTCTCGCTTGAACGCTCCTAA
TATTTTCTGGGCGGGGTATCGTTGTTATGCTACTCTCTATTGATAGCGAA
ATAGTATGGAAACATAATCCACTTTTCTAGCAATAGACTTCAAATCGCAG
CCTGACCCTTTTTTCTGTGACGCCTCCTTGAAAGGTTTTTGTAGGTATTT
GTATCAGTTTTATCTTGATCCTTTTATGATTGAAATCAAAATAATTTTTC
CGCTCCGGTCACATCATCAAACTACTCGTGGCTGCTGAGAGAATTGATGG
CAAGTCTTGATCCCCTCTTCGAAACCCTATCATAGATGCCGAAAATCCAT
GAGACCGAATCTTTAGGTCTTGCATGTACAAAAAGCTACAAAATACAACA
ATGAAACAGAGGAGATTTGTTTTAACGGCGAGACATTTGGTGGAGTGAGA
CTGAACGTCCCACGCGTCTTGGGTTGTTTTCGACGGCTTCGTTAGGAGAT
GTGGCGACGGCCGGGACAGGGGGTGCAGACGCGTGGAGGCTGGAAAACCA
CCCTGCGGTACATCTTGGGAGGCACCTCTGCTGCGGACGGTGACCCCCGC
GTTTCGAATCACGTACCCTTGAAGGTATGGCAAGAGTATACAGTTCACAA
GAGTAGTGATTTTCAAACCACACGAGGGTCCGTTGTATTTGTGGAAAAGC
TCACACATGACGAGGCATGCCTGGAACATCAAGAGGTTTTGTATTTGCAG
CCTATGATCCCACCGAAACGTTTTGACATTTTCCCCCCCTGACTGGGGTA
TAGTATAGTATAGTATGCTTAGAAGGTCTAAATGCGTTCAGATTTTTCTT
TGAAGACACATCCGAAAGTACTACACTACTCGTGTATTGGTTAATATTTA
ATGTATTGTAGCGCTGGAAAAGCTCTACAAGTACTGCGCATTGGCCGCTT
TGCAAAAAACGCTCGAAACTCACTCTTCCGAATGGCGCGGTTGCTTGCGG
TGATATGGTGGTATTTAGGTTTTATTCGTGTGTCATGGCTATCCACCAGC
ACGAGTCCTTGCTAAACTCAGCAAGTGATGATGGGTGTGATTAAAATTAT
TACCGGTACAGTAATATTTCCTCCTCTCTCCCCCCCCTCCGCCCAACGAA
ATATGGAACATGAACTGCACACACAACTCTAGAGCTTCTATATACGTAGA
CGTGCATGGATGAGGCAATGCATATGAACAAATGCTCCGTCATCCACCAT
GCACCACCCGCACACATAACCACAACGTTAAGTTTCTGTTCTGGACTAAA
TTACACAGGCGACACCTTCCCCGCCAGGTGTCGGGATTTTTTTCGGATCT
TCTGTTCCAGCCGTACCATTGCGCCACCGCTGCCTTGAGACCCGAGTGGA
TCAGCCGTAACACGGTGGACAGGAGGGTAGGGATTTCTCCCTCGGACTTC
CGACGGCTCTACGAGGAGCCCAACAGACCCGTAGTCCTCACAGACGCCGC
AAAAAGGTACAAGTACTGCAATCAATTCGCAATGATAATGTACTGTGTAC
ATAATTTTCTACTGTACATTTCTATACGAACACGACCCTGTAGTACGCAG
ATCACGTCCTTGGTCGATGTGTGCGTGAAGTATGCTTGTCGTGGGCAGGC
CTGGCTTGAACATGTTTTCAGAAAGAGCATCTCGCCGCCGCTCGGAAACC
CTCCGTAGACCGCTGTTCCGCCGAGATTTCGGGAAAGAAAACAACTATTT
ATAGAACAAGCCTGGTGTCCTCTTTTTTCGTCTTGAGGAAGGGTTACTCA
CGTGAATAAAACGTGTGGAATCCTTGCGCATGGATTTGCGCTTGCTTACT
CCTCTAAAACCCGACCCCCCGTCTCGGAATCATAGCCGCGTGATGCACCT
TGCGTGTTACAACATTCATAGTCATCCGCGGAACGTCTGTTAACACCTGT
TCGTCGTTTTACCTCGTCGGCGCTCTCGCAGCTGGCCTGCCCTTGAAAAG
TGGACCCGAAGCAAGCTTCTGGCAGAGCACAGGGATCTCCGCCTGCATGC
CGGAGGCCTAGAGATCGCGCTGAAGGTGCTGTATAACCAACTGGCCTGTC
ATATACCAATGCTCGCAACGGTGCGCCAGTTGTTTGCCCGGCAGACTAAA
AAAAGAAACACACAACTCGTCGTTTCATTTATTCGTTCTTTCTGCCGACT
ACATCTCTGCCGACAGCAAGATCGTAAGGAACGATGCTGCTGCTGCTGCT
GCACCCGCTGTGCAGTGATTCGAGAACGGTTCCCCCTTGCCCCCCCCCCC
CCGCTCCCCCTTGTAATTCATCGGCAGGACTATCTCCGCTACGCCGAGGA
GTCGAAGGACGAGCTACCGCTTTACGTGTTCGACAAGAAATTTGTCGACA
AGTGCCCCGCCCTCGGCCAAGACTATGACGTCCCAGACGTCTTCCCGGTG
AGCCGTTCTTTCTGTATTGGGTGTAATAGCGCTCACTTGCTCTACTGTGT
GTGTGTGTCATGAAGCAGAGCGTGTCCGTTTATTGACCTCGTGGTCATCG
TCTGCGTGTCGTGTGGGTGTCAGGACGATCGCTTAGGCTGGATAGTTAAG
CCGTATCATCTCGTTTCTCTTCCCTCCTAACTTTAAAAGCCCTTTTTGCG
TGGTTATTATCACGCGACCAGCTCAGGAGGCAACGGGCGGACATACAACC
TTCGCCGGTCGTGTTGTTCGGCAAAGCATTTTTATCGGAACTTAGCGGTC
TCTCAGTCACAGGAGAAAGAAAAAGAAGAAACAAATGTTTTCTGCGTTAT
TCTTCATGAAAAGGCCACATTATTCCGCATCGTCCACACGGTAGCGACGC
CTCGCCGACGGCTGCGTAATTGTGTTTCGAAAGAGCGATCGAACGTGTTT
TACCCTTGCTTGCATCGACTTGAGCCGGCATCGTTCAAGTGTCGCAATTG
CCTCCAGTGCCACGCTCCCTGTAAGCTCTTTTTACTCAAGACAGCCCAGT
GCTGTACGGAAGCTCCTGTGTGTCTTCACATAACACAGAAGACGATTTAT
GCCGCTCTTTCCCTCGAAAATTGCCCCTCCCCGTCCTTATCCGTGGCGTC
ATACACCTTTACACCTCGCCATCTGGTTTGGGTTGACAGTTTGGATGAGT
ACTGAGTAGGGTTTACGGAACATACGGTAATAGATGTTGCGATAGGGCCG
TAACAACATCGCCTCCTCTTAAAACACGACTCTCAGGAGGACCTGCTTTC
CGTGCTTGGTGACGAGCAACGTCCGGATCACCGTTGGCTCATTGCGGGTC
CCGCTCGCTCGGGCTCATCGTTCCACGTCGACCCCAACTGTACGAGCGCC
TGGAACGCAACGGTCTCGGGCAAGAAAAAATGGATCTTGTTTCCCCCAGG
AGAAACGCCTCCGGGAGTTCACCCGAGTGAAGACGGGCTAGACCTGGCGG
CTCCCGTGTCCCTCATGGAGTGGTTCTTGAATTTCTACGAGGTATCTGAA
CAAGATCGAGATTCGGTCCTGACGCGTTGATATGTACTTGTTGTATCACT
TAGGCTGCCAAGTATCGGTATTCTGTTTTGTGCCGCGATGCCATGTTGGT
TGTGTTTGGTGCAACCAGCAGTAGCATGCCGGGTTCCTTTTTTCCCCCAG
AGAGAGGTAAAGTTGGGGGTAGGGCTGAGCAGGGGTAGCATAGCGTTAAG
ATACTCATATCCCGAACTATTTTCGTTCAATCTCCATGAAGCACTAAGTG
CATGCATCGCCACGCTATAGCCCTAATATGAGCTCGTGCGCGAGGTACTT
TTCCAGAGAGGTGCCGTTGACGGAGTCTAACCAAAAGCAGCACGTGACAT
GATCATGATCAGGCCTTCTCTTACAGCAGAGGGGGAAAAGTGTAGCGTAT
GCAACTTTGAACCACCACTCTTTTCACTTGTCGATTGACTCTTTTGTCGT
CTCTTGCCACGGTGTGATCGTACCGTCGTACGGGGGATGGAGGCAGGAAT
GTCATGACCCCGGGCGGAAGGTGTGCCCGCTCGAGTGCGTTGTCTCTGCC
GGAGAGGTGGTGTTCGTGCCGATGGGATGGTGGCACTGCGTCATCAATCT
TGAGTGGTCCGTGGCAATCACGCAGAATTTCGTCAGCAGGGTCAATCTCC
CGAACGTCATCAGGTTCGTTCGGTGCTGTTCTCTACGTTCGTCGAGGGTG
GGGGGAGCCTGTTCTCAGTCGGTTTTGCTAAGCTCTTCCCGCCCCCCCAA
AATAAAAAGCACTAACACAACAAAGGACGCCGAATGACCAATTTTACCAC
TAACCGGAACCGAGTCAACGTTTCTTCCTGCCACACACTCCATCATCGAC
CTGGCCGGCGTCGACGCCTCCTCCTTGACGGCCTGGAGAAAGAACCTCAC
CATTATTCAGGCTGCTACCTAAACATACTTTTTCCTTCAACCGGGGGGTA
ATTAACCCTTTACCCCCCCCCTCCTCCCCCTGACCCGTTGCTGTCTGTCT
CGCGCGTGTGACCATAACGGTGCGTTCCAGGTTTTTGCTTACTAAAAAAC
ATCTCATATCCGGTCTGCCGCCCGACCAACGCTTAGATCTCGGAGAGAGA
TTCGTTTCTGCTTTGACCGCCAAGCGTCCTGACCTCGGCGCCGAGGAGAT
GGCGAGACGCGCTCTCCTGGTCGCCGTCGATGGGCGGAATCAGTCGAACC
GTCGAGGTTTGAAAAACACGGCAGTTCACCGCCGAGAGGATGATGTGAAT
AAAAAGCCGAGGCTGTGGGCGAAACTCAAGCAGGGAGCCGCGGCTGTCGA
GCCCTCCACGGATGATGGCAGCAACGGCGAGGGCAGGGCTGCTGGTGGAG
AGAGGAGCAAGACTGGGGTGGAGGGTTCAGGCAGCAATGATTTTAGTTTT
GGGTTCTCGTTCTAATAACCATTCTAGCGTTCAAACTGTACGTGACGGCG
GTGTACCAGGTAATATGACGACTCCCAGGGGATGGTTAATGGGTGTCCCC
GGTCTAATTGTTTCGCTGTCCTGCGCAGACACTATTTGTAAACTTGACGG
ATTTAACAACATTTGTGCAATTCAATGGGAAAAAACTAGCTTAGGGGATG
TTTGCTGTCCTTGTGGTCGAACGAAAAAGGTTGGGGGGGGCACCCCGGAG
TTATACATTTTATGCAATTTAATGCGTAACAGGATACTACTTTGAAGTAT
TTAGTCAACCGCATCACCTAAGGCATAAGACGAAATGCCGAACAAACGTA
TCTAGGTTGTATGTATGTATCTATGTGTGTATGGTCATCACTCATAGCAA
GATTATGGATCAACCGGGTAAGGTTGCCAATCCTACTCGTAGATGATGTT
TCCCTGTCCCCGTTCTTGCTGAGAATTTGGTCTCGCGAGACAGATTCAGC
GGTCCCGTGTGCCCCTGACTTAACTGTTAAAACTTCGGTATTGTCATCGG
TGCAAAAAACATCCGAACAGGACACCGGCTGTCGTGCTGTTTTGAACTTG
GAGGAAATACAATACTTCTATTAATAGTCAAGCACGAGGAGTTGCGGGCA
TTTCTAACGTGGAACTAACTCCCTCATTTCACACCGACGCGACTTTCTAC
AGTTTTTAGTCGTTTGAAACACCACGGTCCCTCGCCTTTTCCGCCCCCAG
CATGTGTCAAGTCGAAGGCACCTGATCGCAGAAGTGCAGTTGGCGAGACC
TAGGAGATCTCAAGTTGGGGTTTACAGTATCACATGCTGCTTGCGAAAAA
TTACCAGATATTTACTAAGGTTTTTCATAATCGAATTCCATTCGTACATA
back to topCoding sequence (CDS) from alignment at F-serratus_M_contig99:851473..858222- >mRNA_F-serratus_M_contig99.21203.1 ID=mRNA_F-serratus_M_contig99.21203.1|Name=mRNA_F-serratus_M_contig99.21203.1|organism=Fucus serratus male|type=CDS|length=2892bp|location=Sequence derived from alignment at F-serratus_M_contig99:851473..858222- (Fucus serratus male) ATGCTAGACTTGATGGGGTATATGGACTTGTCATCCCTCGGCCGCCTGGC GGTCGTGAGCCGCGCTACGTACGTGTACGCTCACGTGGACGACCTGTGGA AAGCTCTCGTGGTGCAGATGCTAGACTTGATGGGGTATATGGACTTGTCA TCCCTCGGCCGCCTGGCGGTCGTGAGCCGCGCTACGTACGTGTACGCTCA CGTGGACGACCTGTGGAAAGCTCTCGTGGTGCAGGAGATGTGGCGACGGC CGGGACAGGGGGTGCAGACGCGTGGAGGCTGGAAAACCACCCTGCGGTAC ATCTTGGGAGGCACCTCTGCTGCGGACGGTGACCCCCGCGTTTCGAATCA CGTACCCTTGAAGGAGATGTGGCGACGGCCGGGACAGGGGGTGCAGACGC GTGGAGGCTGGAAAACCACCCTGCGGTACATCTTGGGAGGCACCTCTGCT GCGGACGGTGACCCCCGCGTTTCGAATCACGTACCCTTGAAGGTGTCGGG ATTTTTTTCGGATCTTCTGTTCCAGCCGTACCATTGCGCCACCGCTGCCT TGAGACCCGAGTGGATCAGCCGTAACACGGTGGACAGGAGGGTAGGGATT TCTCCCTCGGACTTCCGACGGCTCTACGAGGAGCCCAACAGACCCGTAGT CCTCACAGACGCCGCAAAAAGGTGTCGGGATTTTTTTCGGATCTTCTGTT CCAGCCGTACCATTGCGCCACCGCTGCCTTGAGACCCGAGTGGATCAGCC GTAACACGGTGGACAGGAGGGTAGGGATTTCTCCCTCGGACTTCCGACGG CTCTACGAGGAGCCCAACAGACCCGTAGTCCTCACAGACGCCGCAAAAAG CTGGCCTGCCCTTGAAAAGTGGACCCGAAGCAAGCTTCTGGCAGAGCACA GGGATCTCCGCCTGCATGCCGGAGGCCTAGAGATCGCGCTGAAGCTGGCC TGCCCTTGAAAAGTGGACCCGAAGCAAGCTTCTGGCAGAGCACAGGGATC TCCGCCTGCATGCCGGAGGCCTAGAGATCGCGCTGAAGGACTATCTCCGC TACGCCGAGGAGTCGAAGGACGAGCTACCGCTTTACGTGTTCGACAAGAA ATTTGTCGACAAGTGCCCCGCCCTCGGCCAAGACTATGACGTCCCAGACG TCTTCCCGGACTATCTCCGCTACGCCGAGGAGTCGAAGGACGAGCTACCG CTTTACGTGTTCGACAAGAAATTTGTCGACAAGTGCCCCGCCCTCGGCCA AGACTATGACGTCCCAGACGTCTTCCCGGAGGACCTGCTTTCCGTGCTTG GTGACGAGCAACGTCCGGATCACCGTTGGCTCATTGCGGGTCCCGCTCGC TCGGGCTCATCGTTCCACGTCGACCCCAACTGTACGAGCGCCTGGAACGC AACGGTCTCGGGCAAGAAAAAATGGATCTTGTTTCCCCCAGGAGAAACGC CTCCGGGAGTTCACCCGAGTGAAGACGGGCTAGACCTGGCGGCTCCCGTG TCCCTCATGGAGTGGTTCTTGAATTTCTACGAGGAGGACCTGCTTTCCGT GCTTGGTGACGAGCAACGTCCGGATCACCGTTGGCTCATTGCGGGTCCCG CTCGCTCGGGCTCATCGTTCCACGTCGACCCCAACTGTACGAGCGCCTGG AACGCAACGGTCTCGGGCAAGAAAAAATGGATCTTGTTTCCCCCAGGAGA AACGCCTCCGGGAGTTCACCCGAGTGAAGACGGGCTAGACCTGGCGGCTC CCGTGTCCCTCATGGAGTGGTTCTTGAATTTCTACGAGGAATGTCATGAC CCCGGGCGGAAGGTGTGCCCGCTCGAGTGCGTTGTCTCTGCCGGAGAGGT GGTGTTCGTGCCGATGGGATGGTGGCACTGCGTCATCAATCTTGAGTGGT CCGTGGCAATCACGCAGAATTTCGTCAGCAGGGTCAATCTCCCGAACGTC ATCAGGAATGTCATGACCCCGGGCGGAAGGTGTGCCCGCTCGAGTGCGTT GTCTCTGCCGGAGAGGTGGTGTTCGTGCCGATGGGATGGTGGCACTGCGT CATCAATCTTGAGTGGTCCGTGGCAATCACGCAGAATTTCGTCAGCAGGG TCAATCTCCCGAACGTCATCAGGTTTTTGCTTACTAAAAAACATCTCATA TCCGGTCTGCCGCCCGACCAACGCTTAGATCTCGGAGAGAGATTCGTTTC TGCTTTGACCGCCAAGCGTCCTGACCTCGGCGCCGAGGAGATGGCGAGAC GCGCTCTCCTGGTCGCCGTCGATGGGCGGAATCAGTCGAACCGTCGAGGT TTGAAAAACACGGCAGTTCACCGCCGAGAGGATGATGTGAATAAAAAGCC GAGGCTGTGGGCGAAACTCAAGCAGGGAGCCGCGGCTGTCGAGCCCTCCA CGGATGATGGCAGCAACGGCGAGGGCAGGGCTGCTGGTGGAGAGAGGAGC AAGACTGGGGTGGAGGGTTCAGGCAGCAATGATTTTAGTTTTGGGTTCTC GTTCTAAGTTTTTGCTTACTAAAAAACATCTCATATCCGGTCTGCCGCCC GACCAACGCTTAGATCTCGGAGAGAGATTCGTTTCTGCTTTGACCGCCAA GCGTCCTGACCTCGGCGCCGAGGAGATGGCGAGACGCGCTCTCCTGGTCG CCGTCGATGGGCGGAATCAGTCGAACCGTCGAGGTTTGAAAAACACGGCA GTTCACCGCCGAGAGGATGATGTGAATAAAAAGCCGAGGCTGTGGGCGAA ACTCAAGCAGGGAGCCGCGGCTGTCGAGCCCTCCACGGATGATGGCAGCA ACGGCGAGGGCAGGGCTGCTGGTGGAGAGAGGAGCAAGACTGGGGTGGAG GGTTCAGGCAGCAATGATTTTAGTTTTGGGTTCTCGTTCTAA back to top
|