mRNA_F-serratus_M_contig99.21189.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig99.21189.1
Unique NamemRNA_F-serratus_M_contig99.21189.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig99.21189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig99contigF-serratus_M_contig99:522192..523029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size838
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig99.21189.1prot_F-serratus_M_contig99.21189.1Fucus serratus malepolypeptideF-serratus_M_contig99 522238..522687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932780.023369-UTR-F-serratus_M_contig99:522191..5222371622932780.023369-UTR-F-serratus_M_contig99:522191..522237Fucus serratus maleUTRF-serratus_M_contig99 522192..522237 +
1690964471.3073754-UTR-F-serratus_M_contig99:522191..5222371690964471.3073754-UTR-F-serratus_M_contig99:522191..522237Fucus serratus maleUTRF-serratus_M_contig99 522192..522237 +
1622932780.0553117-UTR-F-serratus_M_contig99:522687..5230291622932780.0553117-UTR-F-serratus_M_contig99:522687..523029Fucus serratus maleUTRF-serratus_M_contig99 522688..523029 +
1690964471.3310046-UTR-F-serratus_M_contig99:522687..5230291690964471.3310046-UTR-F-serratus_M_contig99:522687..523029Fucus serratus maleUTRF-serratus_M_contig99 522688..523029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932780.0393236-CDS-F-serratus_M_contig99:522237..5226871622932780.0393236-CDS-F-serratus_M_contig99:522237..522687Fucus serratus maleCDSF-serratus_M_contig99 522238..522687 +
1690964471.3198311-CDS-F-serratus_M_contig99:522237..5226871690964471.3198311-CDS-F-serratus_M_contig99:522237..522687Fucus serratus maleCDSF-serratus_M_contig99 522238..522687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig99.21189.1

>prot_F-serratus_M_contig99.21189.1 ID=prot_F-serratus_M_contig99.21189.1|Name=mRNA_F-serratus_M_contig99.21189.1|organism=Fucus serratus male|type=polypeptide|length=150bp
MMLLETNFLYHHSTRCTVVVYFIPVIVCGREIHLVSLRQVSFTSSAVWLS
LQVIIFVTIHVAQASRQMMTCMSFLALLRVSCDLNTQKAVVRVQTVACLT
SIGCFWFKVAWGCRTTERVFAHQVWLPRSKRLVQVWSSIPDLPVGACQE*
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mRNA from alignment at F-serratus_M_contig99:522192..523029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig99.21189.1 ID=mRNA_F-serratus_M_contig99.21189.1|Name=mRNA_F-serratus_M_contig99.21189.1|organism=Fucus serratus male|type=mRNA|length=838bp|location=Sequence derived from alignment at F-serratus_M_contig99:522192..523029+ (Fucus serratus male)
TGGGAGTGGAGCGGGTTTGGTGCGCGAGTACGTGGGGCTTAGACTCATGA
TGTTGTTAGAAACTAATTTCCTCTATCATCACTCAACAAGGTGCACGGTG
GTGGTTTACTTTATACCGGTTATAGTTTGCGGACGAGAAATACATCTTGT
ATCTCTTCGACAAGTTTCATTCACGAGCTCCGCGGTGTGGTTATCTCTTC
AAGTAATTATTTTCGTGACGATACACGTAGCGCAGGCTTCGCGCCAAATG
ATGACTTGTATGTCGTTTCTTGCTTTGCTTCGTGTTTCATGCGACCTCAA
CACGCAAAAAGCAGTAGTAAGAGTACAGACAGTAGCATGTCTCACGTCCA
TCGGTTGTTTCTGGTTCAAAGTTGCCTGGGGTTGCAGGACGACTGAGCGC
GTTTTTGCGCATCAAGTCTGGTTGCCTCGGTCAAAGAGACTGGTACAAGT
GTGGAGTTCGATTCCGGATTTGCCCGTGGGTGCGTGCCAGGAGTGATACA
AGTATGTTCGGCGTTTCTCTGTAGATCAGGAGGGGGACAGAAGCGTATCG
AATTCTGGTGCGCTCACGAGTGTTTCGTGCGAAGCATCCATAGGATGCAT
TCTTGGGGAATAGTTGCGTGGCGTGTTTAGATTACGACTCGACCCGGAAT
CGCAGGGGGCGTGTCGATGGTCTCTACTCCCCCTCGCCCCCCCCCCCATT
CGTATTGCGCGTGAGTGGTGGCCAGAAACGCCGCATGCGATCAACGTTCC
CATCGCGTGGTACACGAGACTGGAGCCTTACAGAGTAATAGTAGGCTGAC
AAACAAAAAACGAAAATCGGATTTGCCTCGGCAATTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig99:522192..523029+

>mRNA_F-serratus_M_contig99.21189.1 ID=mRNA_F-serratus_M_contig99.21189.1|Name=mRNA_F-serratus_M_contig99.21189.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig99:522192..523029+ (Fucus serratus male)
ATGATGTTGTTAGAAACTAATTTCCTCTATCATCACTCAACAAGGTGCAC
GGTGGTGGTTTACTTTATACCGGTTATAGTTTGCGGACGAGAAATACATC
TTGTATCTCTTCGACAAGTTTCATTCACGAGCTCCGCGGTGTGGTTATCT
CTTCAAGTAATTATTTTCGTGACGATACACGTAGCGCAGGCTTCGCGCCA
AATGATGACTTGTATGTCGTTTCTTGCTTTGCTTCGTGTTTCATGCGACC
TCAACACGCAAAAAGCAGTAGTAAGAGTACAGACAGTAGCATGTCTCACG
TCCATCGGTTGTTTCTGGTTCAAAGTTGCCTGGGGTTGCAGGACGACTGA
GCGCGTTTTTGCGCATCAAGTCTGGTTGCCTCGGTCAAAGAGACTGGTAC
AAGTGTGGAGTTCGATTCCGGATTTGCCCGTGGGTGCGTGCCAGGAGTGA
ATGATGTTGTTAGAAACTAATTTCCTCTATCATCACTCAACAAGGTGCAC
GGTGGTGGTTTACTTTATACCGGTTATAGTTTGCGGACGAGAAATACATC
TTGTATCTCTTCGACAAGTTTCATTCACGAGCTCCGCGGTGTGGTTATCT
CTTCAAGTAATTATTTTCGTGACGATACACGTAGCGCAGGCTTCGCGCCA
AATGATGACTTGTATGTCGTTTCTTGCTTTGCTTCGTGTTTCATGCGACC
TCAACACGCAAAAAGCAGTAGTAAGAGTACAGACAGTAGCATGTCTCACG
TCCATCGGTTGTTTCTGGTTCAAAGTTGCCTGGGGTTGCAGGACGACTGA
GCGCGTTTTTGCGCATCAAGTCTGGTTGCCTCGGTCAAAGAGACTGGTAC
AAGTGTGGAGTTCGATTCCGGATTTGCCCGTGGGTGCGTGCCAGGAGTGA
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