mRNA_F-serratus_M_contig989.21172.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig989.21172.1
Unique NamemRNA_F-serratus_M_contig989.21172.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A438GMM1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMM1_VITVI)

HSP 1 Score: 241 bits (614), Expect = 2.690e-67
Identity = 142/375 (37.87%), Postives = 206/375 (54.93%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRADG-PKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            +V  P G   +G K VFK K    G +E+YK R +AKGF Q +GI Y E+ SP   + S+R+ LA++A  D E +Q+DV+  FL  ++ EE+Y++ P+G+  S  +  V  L+K++YGL  A   W  KF   + + GF  +  D C++  K  G  V  +V+YVDD+L+ +  K   H   + L  +F +KD+GE SY +G  I RDR        Q+ Y   V ERF  +  S    P+ K      D  PKND E   M   PY  AVG+LM+    TRPD+A+    L ++  N G +HWKA  K ++YL+ T    +     T N+++  + D+D A C D+ +S SG   +L GGAISW S  Q +TAT
Sbjct:  381 LVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTTFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYL-KVSGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYR-RTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTAT 753          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A225WDK2_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDK2_9STRA)

HSP 1 Score: 235 bits (600), Expect = 3.730e-67
Identity = 139/376 (36.97%), Postives = 214/376 (56.91%), Query Frame = 1
Query:    1 KVVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMG-KASLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMK-LSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 1116
            K+V  PKGK  L +K +FK K    G +E+YK R + +G+ QIK I Y+E  +P     S+R+ LA++A  DWE  Q DV+ AFL  D+ EE+Y+  P+G  ++  +  V  L +A+YGL  A   W KK    L +KGF +  +D C++ R   G  V II +YVDDLL++++T          L + F  KD+G + + LG  + R+R  +T + DQ  YA+ V E+F   + +    P      LS+ + PKN+ E A M    YR  VG+LM++   +RPD+A+    ++K+ ++ G  HW A  + L+Y+K T   G+   G +   K L+A+VD+D+A   DT RSVSG  + +G  AI++  ++QR  A
Sbjct:   74 KLVKLPKGKRALTSKWIFKIKYDALGNIERYKARLVIRGYEQIKYIDYEEIFAPVIRLESLRLLLALVAINDWECEQTDVDTAFLNGDLAEEVYMIQPEGLEEAGKEDLVCQLLQALYGLKQAPRAWHKKLTDYLKSKGFVKLDSDSCIYVRTG-GSGVAIIGIYVDDLLLIADTASRIQEMKSMLSAGFKCKDMGAVHHILGLRVKRNRALKTLSIDQTAYAKGVIEKFNLMQLNPCKTPCDPNVILSKENCPKNEDERAQMKNKDYRGLVGSLMYLMTGSRPDIAFGIQCVSKYLNDPGLAHWNAAKRILRYVKGTIGYGLVIDGRSRTGKQLTAFVDSDYAKDIDTRRSVSGYVMQMGDCAITYSCKSQRTVA 448          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A438J7E3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J7E3_VITVI)

HSP 1 Score: 244 bits (622), Expect = 4.240e-67
Identity = 143/375 (38.13%), Postives = 208/375 (55.47%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRADG-PKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            +V+ P G   +G K VFK K    G +E+YK R +AKGF Q +GI Y E+ SP   + S+R+ LA++A  D E +Q+DV+ AFL  ++ EE+Y++ P+G+  S  +  V  L+K++YGL  A   W  KF   + + GF  +  D C++  K  G  V  +V+YVDD+L+ +  K   H   + L  +F +KD+GE SY +G  I RDR        Q+ Y   V ERF  +  S    P+ K      D  PKND E   M   PY  AVG+LM+    TRPD+A+    L ++  N G +HWKA  K ++YL+ T    +     T N+++  + D+D A C D+ +S SG   +L GGAISW S  Q +TAT
Sbjct: 1035 LVDLPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVSKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYL-KVSGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFVVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYR-RTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTAT 1407          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A284R853_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284R853_ARMOS)

HSP 1 Score: 231 bits (590), Expect = 5.880e-67
Identity = 127/368 (34.51%), Postives = 205/368 (55.71%), Query Frame = 1
Query:   16 PKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSA-WVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 1116
            P G+  +G K VF +K  +DG + +YK R +A+G+ QI G+ Y E+ +P     S+  AL + A  D E  Q+DV+ A+L  ++ EE+Y+  P+GY D   +V  L+K +YGL  +G  W+ +F  +L + GF + +AD CV++R   G++  II V+VDDLL+ SET +D      +L + F +KDLGE    +G  I RDR+  T +  Q++Y + V  RFG +    +   +    + +       A+ A + G  Y+  +G+L++ A  TRPD+++    L +F  N GPEHW A+ +  +YL  T +L +      E   +S  + D   AS PD  +S+SG   ++GG + +W S+ Q   A
Sbjct:   10 PAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYNETFAPVVRLESVHAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGCEWNWEFDRKLTSIGFSKLEADHCVYKRIREGRMT-IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVSTLLDPNVILKKRTDDLIADPAMVGG--YQSVIGSLLYAARGTRPDISHAVQELGQFASNPGPEHWTALKRVCRYLAGTRNLELVFRANEEGEIISTGYSDASFASNPDDRKSISGYTYLIGGASFAWSSKKQSTVA 374          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A2N9EBY4_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EBY4_FAGSY)

HSP 1 Score: 243 bits (619), Expect = 5.990e-67
Identity = 140/375 (37.33%), Postives = 211/375 (56.27%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKAS-LSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            +V+ P G   +G K VFK K    G++E+YK R +AKGF Q +G+ Y+E+ SP  ++ S R+ +A++A  D+E  Q+DV+ AFL  D+TE++Y+  PDG++ S  +  V  L+K++YGL  A   W  KF   + + GF+ +  D C++  K  G  ++ +V+YVDD+L+ S            L  +F +KDLGE S+ LG  I RDR        Q+ Y   V ERF     +    P+ K   LS+   P+ND E   M   PY  AVG+LM+    TRPD+A+    L +F  +   +HW+A  K L+YL+RT    +T   + + +++  + D D+A C D  +S SG   ML GGAISW S  Q +TA+
Sbjct:  670 LVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYL-KISGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPSMDHWRAAKKVLRYLQRTKDFMLTYRHS-DLLEVVGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTAS 1042          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A5N6QA02_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6QA02_9ASTR)

HSP 1 Score: 240 bits (613), Expect = 7.820e-67
Identity = 140/375 (37.33%), Postives = 209/375 (55.73%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRA-DGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            +V  P G   +G K VFK K+  +G +E++K R +AKGF Q +GI YQE+ SP   + S+R+ +A++A  D E  Q+DV+ AFL  D+ E+++++ P+G+     +  V  L+K++YGL  A   W  KF   +   GF ++Q D C +  K  G    I+V+YVDD+L+ S +    H +   L  +F +KDLGE SY +G  I RDR        Q+ Y   V  R+  +  S    P+ K  +  +   PK +AE A M   PY   VG+LM+    TRPD+AY A  L ++  N G +HWKA  K L+YL+ T    +T    ++N+++  + D+D A C D  +S SG   ML GG ISW S  Q++T T
Sbjct:  445 LVELPNGVKPVGCKWVFKTKLDPNGNIERFKARLVAKGFTQKEGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLYEDVFMKQPEGFMPEGQEHLVCKLKKSIYGLKQASRQWYLKFDEVMKKHGFLKNQVDQCTYL-KMSGSNFTILVLYVDDILLASNSLDMLHESKRLLSHNFDMKDLGEASYVIGIEIHRDRVNGLLGLSQKAYIDRVLTRYNMQHCSPSVAPVVKGDVFGSFQCPKTEAEKAQMRMIPYASVVGSLMYAQVCTRPDIAYIAGMLGRYQTNPGLDHWKAAKKVLRYLQGTKDFKLTYR-RSDNLEVVGYSDSDFAKCKDDKKSTSGYIFMLAGGPISWKSHKQQLTTT 817          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A5N6MU84_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Heliantheae alliance TaxID=911341 RepID=A0A5N6MU84_9ASTR)

HSP 1 Score: 231 bits (589), Expect = 1.310e-66
Identity = 136/374 (36.36%), Postives = 205/374 (54.81%), Query Frame = 1
Query:    7 VNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRA-DGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            V  P G   +G K VFK K+  +G +E++K R +AKGF Q + I YQE+ SP   + S+R+ +A++A  D E  Q+DV+ AFL  D+ E+++++ P+G+     +  V  L+K++YGL  A   W  KF   +   GF ++Q D C +  K  G    I+V+YVDD+L+ S +    H +   L  +F +KDLGE SY +G  I RDR +      Q+ Y   V  R+  +  S    P+ K  +  +   PK +AE A M   PY   VG+LM+    TRPD+AY    L ++  N G +HWKA  K L+YL+ T    +T    ++N+++  + D+D A C D  +S SG   ML    ISW S  Q++T T
Sbjct:   10 VELPNGVKPVGCKWVFKTKLDPNGNIERFKARLVAKGFTQKERIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLYEDVFMKQPEGFMPEGQEHLVCKLKKSIYGLKQASRQWYLKFDEVMKKHGFLKNQVDQCTYL-KMSGSNFTILVLYVDDILLASNSLDMLHESKRLLSHNFDMKDLGEASYVIGIEIHRDRVSGLLGLSQKAYIDRVLTRYNMQHCSPSVAPVVKGDVFGSFQCPKTEAEKAQMRMIPYASVVGSLMYAQVCTRPDIAYIFGMLGRYQTNPGLDHWKAAKKVLRYLQGTKDFKLTYR-RSDNLEVVGYSDSDFAKCKDDKKSTSGSIFMLADEPISWKSHKQQLTTT 381          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A015J5I9_RHIIW (Gag-pol fusion protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015J5I9_RHIIW)

HSP 1 Score: 241 bits (614), Expect = 4.100e-66
Identity = 136/374 (36.36%), Postives = 209/374 (55.88%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDS--PNQVG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPM-GKASLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 1116
            +V+   G+  +G K +FK+K   DG+V  +K R +AKGF Q  G+ Y E+ SP     SIR+ LA+ A  D+E  Q+DV+ AFL   +TE++Y+  P+G+ D+  PN+V  L++++YGL  A   W+  F  ++   GF RS+ + CV+  K  G +V  +V+YVDD+L++             L   F +KDLGE +Y LG  I RDRK R     Q  Y + V +RF    +    +P+   A LS+   P  D EIA M   PY  AVG++M+    TRPD+A+    ++++  N G  HW AV   L+YL+RT ++ +  GG+ + +++  + D    +  D+ RS SG   +L GGA++W S  Q   A
Sbjct:  812 LVDNVPGRKTVGCKWIFKKKTDMDGKVHTFKARLVAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDYEIWQMDVKTAFLNGKLTEDVYMNQPEGFVDAKYPNKVCKLERSIYGLKQASRSWNLCFHEKVKEFGFSRSEDESCVYV-KASGSIVTFLVLYVDDILLMGNDIPTLQDVKAWLGKCFAMKDLGEAAYILGIRILRDRKKRLIGLSQGTYLEKVLKRFSMENSKKGELPIQSNAKLSKTQSPSTDEEIAEMSRVPYASAVGSIMYAMTCTRPDVAFALSMVSRYQGNPGRAHWIAVKNILKYLRRTKNMVLVLGGS-DTLRVEGYTDASFQTDRDSGRSQSGWVFLLNGGAVTWKSSKQETVA 1183          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A151S6Y9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S6Y9_CAJCA)

HSP 1 Score: 229 bits (584), Expect = 4.370e-66
Identity = 135/374 (36.10%), Postives = 199/374 (53.21%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGY--RDSPNQVG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTSVIPVPMGKA-SLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITA 1116
            +V  PKGK  L  + +FK K   +     YK R + KGFRQ KG+ + E  SP    SSIR  L++   LD E  ++DV+  FL  D+ EE+Y++ PDG+      + V  L+K++YGL  A   W KKF   +  + ++++ +D CVF RK      +I+++YVDD+L++ +      R  + L  SF +KD+G     LG  I RDRK +     Q+ Y Q V +RF       +  P+     LS    P N+ E   M   PY  AVG+LM+    TRPD+A+   T+++F  N G EHW AV   L+YL+ T+ L +  GG  +   L  + D+D A   D+ +S SG  V   GG ++W SR Q+  A
Sbjct:   42 LVKLPKGKRALENRWIFKVKQESNSTSPIYKARLVVKGFRQRKGVDFNEIFSPVVRMSSIRTMLSLATTLDLEVEKMDVKTIFLHGDLEEEIYMKQPDGFLIEGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMCEQDYKKTTSDHCVFVRKFSDDDFIILLLYVDDMLIVGKDVSKIDRLKKQLGESFSMKDMGAAKKILGISIIRDRKDKKLWLSQEHYIQNVLQRFHMENVKAVSTPLAAHFKLSVKQCPSNEVEKINMSRVPYAYAVGSLMYAMVCTRPDIAHAVGTVSRFLSNPGREHWNAVKWILRYLRGTSGLKLYFGG--DKPTLVGYSDSDMAGDIDSRKSTSGYLVKFAGGVVAWQSRLQKCVA 413          
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Match: A0A438GI73_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GI73_VITVI)

HSP 1 Score: 240 bits (613), Expect = 5.900e-66
Identity = 144/377 (38.20%), Postives = 212/377 (56.23%), Query Frame = 1
Query:    4 VVNRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFMAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VG*LQKAMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGTFDQQRYAQTVTERFGTRKTS--VIPVPMG-KASLSRADGPKNDAEIAAMHGFPYREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKRTASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWFSRAQRITAT 1119
            +V  P G   +G K VFK K    G +E+YK R +AKGF Q +GI Y E+ SP   + S+R+ LA++A  D E +Q+DV+ AFL  ++ EE+Y++ P+G+  S  +  V  L+K++YGL  A   W  KF   + + GF  +  D C++  K  G  V  +V+YVDD+L+ +  K   H   + L  +F +KD+GE SY +G  I RDR        Q+ Y   V ERF  +  S  V P+  G + +L++   PKND E   M   PY  AVG+LM+    TRPD+A+    L ++  N G +HWKA  K ++YL+ T    +     T N+++  + D+D A C D+ +S SG   +L GGAISW S  Q +TAT
Sbjct:  857 LVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYL-KVSGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLNQC--PKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYR-RTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTAT 1229          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig989.21172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438GMM1_VITVI2.690e-6737.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A225WDK2_9STRA3.730e-6736.97Integrase, catalytic core protein n=1 Tax=Phytopht... [more]
A0A438J7E3_VITVI4.240e-6738.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A284R853_ARMOS5.880e-6734.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9EBY4_FAGSY5.990e-6737.33Integrase catalytic domain-containing protein n=4 ... [more]
A0A5N6QA02_9ASTR7.820e-6737.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6MU84_9ASTR1.310e-6636.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A015J5I9_RHIIW4.100e-6636.36Gag-pol fusion protein n=1 Tax=Rhizophagus irregul... [more]
A0A151S6Y9_CAJCA4.370e-6636.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GI73_VITVI5.900e-6638.20Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig989contigF-serratus_M_contig989:297100..298526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1427
Cds size801
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig989.21172.1prot_F-serratus_M_contig989.21172.1Fucus serratus malepolypeptideF-serratus_M_contig989 297442..298242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932778.8735828-UTR-F-serratus_M_contig989:297099..2974411622932778.8735828-UTR-F-serratus_M_contig989:297099..297441Fucus serratus maleUTRF-serratus_M_contig989 297100..297441 +
1690964470.684142-UTR-F-serratus_M_contig989:297099..2974411690964470.684142-UTR-F-serratus_M_contig989:297099..297441Fucus serratus maleUTRF-serratus_M_contig989 297100..297441 +
1622932778.9106004-UTR-F-serratus_M_contig989:298242..2985261622932778.9106004-UTR-F-serratus_M_contig989:298242..298526Fucus serratus maleUTRF-serratus_M_contig989 298243..298526 +
1690964470.7100713-UTR-F-serratus_M_contig989:298242..2985261690964470.7100713-UTR-F-serratus_M_contig989:298242..298526Fucus serratus maleUTRF-serratus_M_contig989 298243..298526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932778.8933263-CDS-F-serratus_M_contig989:297441..2982421622932778.8933263-CDS-F-serratus_M_contig989:297441..298242Fucus serratus maleCDSF-serratus_M_contig989 297442..298242 +
1690964470.6995745-CDS-F-serratus_M_contig989:297441..2982421690964470.6995745-CDS-F-serratus_M_contig989:297441..298242Fucus serratus maleCDSF-serratus_M_contig989 297442..298242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig989.21172.1

>prot_F-serratus_M_contig989.21172.1 ID=prot_F-serratus_M_contig989.21172.1|Name=mRNA_F-serratus_M_contig989.21172.1|organism=Fucus serratus male|type=polypeptide|length=267bp
MYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYV
DDLLVLSETKQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTGT
FDQQRYAQTVTERFGTRKTSVIPVPMGKASLSRADGPKNDAEIAAMHGFP
YREAVGALMWVANMTRPDLAYTAHTLAKFGDNHGPEHWKAVLKALQYLKR
TASLGVTCGGATENMKLSAWVDTDHASCPDTHRSVSGGAVMLGGGAISWF
SRAQRITATRRPNRST*
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mRNA from alignment at F-serratus_M_contig989:297100..298526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig989.21172.1 ID=mRNA_F-serratus_M_contig989.21172.1|Name=mRNA_F-serratus_M_contig989.21172.1|organism=Fucus serratus male|type=mRNA|length=1427bp|location=Sequence derived from alignment at F-serratus_M_contig989:297100..298526+ (Fucus serratus male)
AAGGTCGTCAATCGACCCAAAGGAAAAACCGTACTCGGCACCAAGACCGT TTTTAAACGGAAGGTCGGCCAGGATGGCCGTGTAGAAAAATACAAGTGCC GCTTCATGGCCAAGGGTTTCCGCCAGATCAAGGGGATCCATTACCAAGAG TCATCGTCGCCGACTCCTACACAGTCGAGCATCCGGATGGCGCTGGCGGT GATGGCCCAGTTGGACTGGGAGGGGCGGCAGCTTGACGTAGAAATGGCGT TTCTCGAGGCGGATGTTACGGAGGAGCTATACGTTGAGCTCCCCGATGGG TATCGCGACTCGCCGAATCAGGTTGGATGACTGCAGAAGGCCATGTACGG CCTGATGCACGCCGGACTACTGTGGTCGAAGAAGTTCGGCGGAGAGTTGA TAGCGAAGGGGTTCGAGAGGTCCCAAGCCGATCCCTGTGTGTTCCGGCGG AAGCATCTAGGGAAGGTCGTTGTCATCATTGTGGTCTACGTTGACGATCT ACTGGTGCTGAGCGAAACGAAGCAGGACGAGCATCGGGCGATGGAAGACC TTCGATCCAGCTTCCCCATCAAAGATCTAGGGGAGATCTCGTACTACCTG GGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGGGACGTTCGATCA GCAGCGTTACGCGCAGACAGTAACCGAGCGATTCGGAACTCGGAAGACCA GCGTGATCCCTGTTCCTATGGGGAAAGCGTCACTTTCGAGGGCAGACGGG CCGAAAAACGATGCTGAGATCGCAGCGATGCATGGCTTCCCGTATCGCGA GGCAGTGGGGGCACTTATGTGGGTAGCCAACATGACTCGGCCTGACCTAG CTTATACCGCGCACACGCTCGCCAAGTTCGGTGACAACCACGGGCCCGAG CACTGGAAGGCAGTACTGAAAGCGCTACAGTACCTGAAACGAACGGCGAG CCTAGGGGTAACATGTGGAGGCGCGACGGAGAACATGAAGCTATCGGCAT GGGTGGACACCGATCACGCATCATGCCCTGATACGCACCGTTCGGTATCG GGGGGCGCGGTGATGCTCGGTGGAGGAGCAATCAGTTGGTTTTCGCGGGC TCAGAGAATAACCGCGACGCGACGTCCGAATCGGAGTACGTAGCACTGGC GGAGATTGTGAATGAGCTACGTTTCCTTCGGCAGGTGAAAGCGTTTATGG TACCTCCAATCGACACCAACATCTGTGTTCACGAGGACAACGAAGGCGCT ATCAAGATGGCAGAGAACAGGTTTAGTAGTCGACGAACAAGACACATCGA CGTGAAGCATCATATGGTTCGGGATGCCGTCGATGGGGGAATAGTCCGTG TAGAGTATGTCAAGTCGAGAGAACAGCATGCGGACGTACTAACTAAGGCG ATAGATGCTAAGTCGTTTGAAAAGCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig989:297100..298526+

>mRNA_F-serratus_M_contig989.21172.1 ID=mRNA_F-serratus_M_contig989.21172.1|Name=mRNA_F-serratus_M_contig989.21172.1|organism=Fucus serratus male|type=CDS|length=1602bp|location=Sequence derived from alignment at F-serratus_M_contig989:297100..298526+ (Fucus serratus male)
ATGTACGGCCTGATGCACGCCGGACTACTGTGGTCGAAGAAGTTCGGCGG
AGAGTTGATAGCGAAGGGGTTCGAGAGGTCCCAAGCCGATCCCTGTGTGT
TCCGGCGGAAGCATCTAGGGAAGGTCGTTGTCATCATTGTGGTCTACGTT
GACGATCTACTGGTGCTGAGCGAAACGAAGCAGGACGAGCATCGGGCGAT
GGAAGACCTTCGATCCAGCTTCCCCATCAAAGATCTAGGGGAGATCTCGT
ACTACCTGGGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGGGACG
TTCGATCAGCAGCGTTACGCGCAGACAGTAACCGAGCGATTCGGAACTCG
GAAGACCAGCGTGATCCCTGTTCCTATGGGGAAAGCGTCACTTTCGAGGG
CAGACGGGCCGAAAAACGATGCTGAGATCGCAGCGATGCATGGCTTCCCG
TATCGCGAGGCAGTGGGGGCACTTATGTGGGTAGCCAACATGACTCGGCC
TGACCTAGCTTATACCGCGCACACGCTCGCCAAGTTCGGTGACAACCACG
GGCCCGAGCACTGGAAGGCAGTACTGAAAGCGCTACAGTACCTGAAACGA
ACGGCGAGCCTAGGGGTAACATGTGGAGGCGCGACGGAGAACATGAAGCT
ATCGGCATGGGTGGACACCGATCACGCATCATGCCCTGATACGCACCGTT
CGGTATCGGGGGGCGCGGTGATGCTCGGTGGAGGAGCAATCAGTTGGTTT
TCGCGGGCTCAGAGAATAACCGCGACGCGACGTCCGAATCGGAGTACGTA
GATGTACGGCCTGATGCACGCCGGACTACTGTGGTCGAAGAAGTTCGGCG
GAGAGTTGATAGCGAAGGGGTTCGAGAGGTCCCAAGCCGATCCCTGTGTG
TTCCGGCGGAAGCATCTAGGGAAGGTCGTTGTCATCATTGTGGTCTACGT
TGACGATCTACTGGTGCTGAGCGAAACGAAGCAGGACGAGCATCGGGCGA
TGGAAGACCTTCGATCCAGCTTCCCCATCAAAGATCTAGGGGAGATCTCG
TACTACCTGGGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGGGAC
GTTCGATCAGCAGCGTTACGCGCAGACAGTAACCGAGCGATTCGGAACTC
GGAAGACCAGCGTGATCCCTGTTCCTATGGGGAAAGCGTCACTTTCGAGG
GCAGACGGGCCGAAAAACGATGCTGAGATCGCAGCGATGCATGGCTTCCC
GTATCGCGAGGCAGTGGGGGCACTTATGTGGGTAGCCAACATGACTCGGC
CTGACCTAGCTTATACCGCGCACACGCTCGCCAAGTTCGGTGACAACCAC
GGGCCCGAGCACTGGAAGGCAGTACTGAAAGCGCTACAGTACCTGAAACG
AACGGCGAGCCTAGGGGTAACATGTGGAGGCGCGACGGAGAACATGAAGC
TATCGGCATGGGTGGACACCGATCACGCATCATGCCCTGATACGCACCGT
TCGGTATCGGGGGGCGCGGTGATGCTCGGTGGAGGAGCAATCAGTTGGTT
TTCGCGGGCTCAGAGAATAACCGCGACGCGACGTCCGAATCGGAGTACGT
AG
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