mRNA_F-serratus_M_contig989.21171.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig989.21171.1
Unique NamemRNA_F-serratus_M_contig989.21171.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig989.21171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig989contigF-serratus_M_contig989:271835..272298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size464
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932776.0669096-UTR-F-serratus_M_contig989:271834..2719861622932776.0669096-UTR-F-serratus_M_contig989:271834..271986Fucus serratus maleUTRF-serratus_M_contig989 271835..271986 +
1690964469.1139462-UTR-F-serratus_M_contig989:271834..2719861690964469.1139462-UTR-F-serratus_M_contig989:271834..271986Fucus serratus maleUTRF-serratus_M_contig989 271835..271986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932776.107185-CDS-F-serratus_M_contig989:271986..2722981622932776.107185-CDS-F-serratus_M_contig989:271986..272298Fucus serratus maleCDSF-serratus_M_contig989 271987..272298 +
1690964469.132912-CDS-F-serratus_M_contig989:271986..2722981690964469.132912-CDS-F-serratus_M_contig989:271986..272298Fucus serratus maleCDSF-serratus_M_contig989 271987..272298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig989.21171.1prot_F-serratus_M_contig989.21171.1Fucus serratus malepolypeptideF-serratus_M_contig989 271987..272298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig989.21171.1

>prot_F-serratus_M_contig989.21171.1 ID=prot_F-serratus_M_contig989.21171.1|Name=mRNA_F-serratus_M_contig989.21171.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MGLPNPSRETKSSGANADRETFVFPVQIATSKIGNLTRLIHTHVMCMCVA
IRCKIQHHVGHYLSPRAKCSVTHVGMKLAASSSRIAILGGMIRRQDERGM
YGTK
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mRNA from alignment at F-serratus_M_contig989:271835..272298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig989.21171.1 ID=mRNA_F-serratus_M_contig989.21171.1|Name=mRNA_F-serratus_M_contig989.21171.1|organism=Fucus serratus male|type=mRNA|length=464bp|location=Sequence derived from alignment at F-serratus_M_contig989:271835..272298+ (Fucus serratus male)
ATCGGTACGCAATTGCGTGACCCGATAAACTCGGGACTGATCCGATGGCT
TATGGCGGTATAGATAATGGACGCCGCCGTGGAAATCGGGAGGAATCCCG
TGAGTGAGCACCAGATTCAGCTTGAGGATGGAGATGAGCAGGCGGAGGCG
GGATGGGACTGCCGAACCCGTCTCGCGAGACCAAATCCTCAGGCGCAAAC
GCGGACAGAGAAACATTCGTTTTCCCTGTTCAGATCGCCACGAGCAAGAT
TGGCAACCTTACCCGTTTGATCCATACTCATGTTATGTGTATGTGTGTGG
CCATACGTTGCAAGATCCAGCATCACGTTGGTCATTATTTGTCGCCGCGT
GCAAAGTGTTCCGTTACTCACGTGGGGATGAAGCTCGCCGCAAGCTCCTC
TCGCATCGCCATCTTAGGAGGTATGATACGTAGACAAGACGAAAGAGGTA
TGTATGGTACAAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig989:271835..272298+

>mRNA_F-serratus_M_contig989.21171.1 ID=mRNA_F-serratus_M_contig989.21171.1|Name=mRNA_F-serratus_M_contig989.21171.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig989:271835..272298+ (Fucus serratus male)
ATGGGACTGCCGAACCCGTCTCGCGAGACCAAATCCTCAGGCGCAAACGC
GGACAGAGAAACATTCGTTTTCCCTGTTCAGATCGCCACGAGCAAGATTG
GCAACCTTACCCGTTTGATCCATACTCATGTTATGTGTATGTGTGTGGCC
ATACGTTGCAAGATCCAGCATCACGTTGGTCATTATTTGTCGCCGCGTGC
AAAGTGTTCCGTTACTCACGTGGGGATGAAGCTCGCCGCAAGCTCCTCTC
GCATCGCCATCTTAGGAGGTATGATACGTAGACAAGACGAAAGAGGTATG
TATGGTACAAAGATGGGACTGCCGAACCCGTCTCGCGAGACCAAATCCTC
AGGCGCAAACGCGGACAGAGAAACATTCGTTTTCCCTGTTCAGATCGCCA
CGAGCAAGATTGGCAACCTTACCCGTTTGATCCATACTCATGTTATGTGT
ATGTGTGTGGCCATACGTTGCAAGATCCAGCATCACGTTGGTCATTATTT
GTCGCCGCGTGCAAAGTGTTCCGTTACTCACGTGGGGATGAAGCTCGCCG
CAAGCTCCTCTCGCATCGCCATCTTAGGAGGTATGATACGTAGACAAGAC
GAAAGAGGTATGTATGGTACAAAG
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