mRNA_F-serratus_M_contig989.21168.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig989.21168.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.600e-13 Identity = 92/326 (28.22%), Postives = 143/326 (43.87%), Query Frame = 1 Query: 1162 VRECFLGAIAASDWPTNPLIPGLNLSVALIEAIRQSPDFRQPLLE-LRADVDALVLSVLEHLPDTVAGFNRFTPTGITPADLPSKGPLRMKKSLTGLGGVEASLSSTVARGQTNKGLGAIETAPVMGSGISFVQEMLEPELAGLRAKNCAGPLAQAVHFRHQEFICSPLVVDYLRLKFSAGLPNPFRETDWRRENGRTDRDLARFMLDEDESKLMVYVLQGG--------------------------CADSPRRVKGG--DKEKYWTFSPGMQFILAGLVSKTAAFFGVPAMRLALDVLVYSGVIIVFVLKVVVIRDAGVLTPWE 2052 + +C L +AASD N I G+ LSVA ++ +++P+ + LE ++ V AL+L +LE LP TV GFN GG+ A S+ + +K G F +P LA L N + + F +PL++DYL KF+ GLP+ + D NG T+ D+ L +M V+ GG +SPR + G D+ TF PG QF +AG ++K ++ +PA+R+ LDV+VY ++++ L ++V RD+G LT E Sbjct: 48 LHDCCLRVVAASD---NLFISGMTLSVARVDVTKKAPEGERGTLEAIQGHVHALLLEILERLPQTVNGFN---------------------------GGM-ADCSAVLGPEFDSK----------TGESTGF-----KPPLALLLLANS---------IQTETFCSTPLIMDYLSRKFTHGLPD-VGDKDGVLRNG-TEHDV----LSGSGPGMMSLVIGGGDDEELDERGYHEFRHKDLLVKNGLKASFESPRALLQGANDRLASLTFLPGAQFAIAGFLAKPNNYYRIPAVRMVLDVVVY--LLVIIALSILVFRDSGSLTRGE 310
BLAST of mRNA_F-serratus_M_contig989.21168.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.420e-12 Identity = 125/505 (24.75%), Postives = 208/505 (41.19%), Query Frame = 1 Query: 1570 EPELAGLRAKNCAGPLAQAVHFRHQEFICSPLVVDYLRLKFSAGLP--------NPFR-ETDWRRENGRTDRDLAR-----------------------FMLDEDESKLMVYVLQGGCADSPRRVKGGDKEKY--W--TFSPGMQFILAGLVSKTAAFFGVPAMRLALDVLVYSGVIIVFVLKVVVIRDAGVLTPWELLWLIYVVGAIGQQLREVEETGSIRTHFSNPWNNVETATLVAITTALVFRMWAFVCDGHGEHFCGEQSGEVNEVYLAQYFQAASAPFVLGKVLF-LTQIHSSLGPLMHSLFRMFSDLARFGALMLVFILGFALAFYSLFGSPSALLP----DGGEISNFETYFSSLLTLFSSMLGTFDFAVFD-GAPMAEAGVVLLVLFLCLMNVTLLNLLIAILTTTHSKVEGNADKEAVLSEALIITQYRRAMRSDSLPSPLNVPQELI--------CHLFWWNKERAKE----LFARGMFWLITGPVAIAATAVL 2922 E E G+R GPLA A+ E +CSPLV+D L K +AG+ NP + + R GR LAR + D R G K W T +P +Q +L G+ S+ F+ VPA RLALD +VY ++ ++ + + + + G + PWE+L I+V+ + + T + +T T A R D G+ GE + ++A + A++AP +L ++L + LGP + ++ + + ++ + +LG ALA + ++G S LL GG + F T+ S T+ + G D V D P E VLL +F + L+++ + +L+ +K L+ A +I + A R + LP P N+ Q + CH + +A + R +FWL+ GP+A+A+ +L Sbjct: 1025 ESEAVGMRGAAFEGPLALALQMGWTELVCSPLVLDLLWAKLTAGVELDVHSCGANPAQVPVEKRAREGRRGM-LARSAPAPAVTAATPVHNTAAXXXXXXXXXXXXXXXXATATRVERMDPARSSPGNSKHAAASWDITIAPSLQAVLVGVASRPDVFYRVPAARLALDAVVYLLMLAIYTVALYRV-EPGSIGPWEVLLYIWVLSMCFSE---------VTTGAGGVVGDADTERREGGTPAEPLRQRRR--DYRGDAVDGEWM--CFQGFVALF--ASAAPLLLFRLLRGVAAFLPVLGPAVKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTELSGGFVDGFRTFGVSCRTVARAGFG--DIQVPDEDVPYGEPLYVLLYVFAAAGALALVSIYVGVLSNVKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLAVASAMLL 1510
BLAST of mRNA_F-serratus_M_contig989.21168.1 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 2.600e-12 Identity = 114/477 (23.90%), Postives = 192/477 (40.25%), Query Frame = 1 Query: 1570 EPELAGLRAKNCAGPLAQAVHFRHQEFICSPLVVDYLRLKFSAGL--------------------------PNPFRETDWRRENGRTDRDLARFMLDEDESKLMVYVLQG--GCADSPRRVKGGDKEKYWTFSPGMQFILAGLVSKTAAFFGVPAMRLALDVLVYSGVIIVFVLKVVVIRDAGVLTPWELLWLIYVV------------GAIGQQLREVEETGSIRTHF------------------SNPWNNVETATLVAITTALVFRMWAFVCDGHGEHFCGEQSGEVNEVYLAQYFQAASAPFVLGKVLF-LTQIHSSLGPLMHSLFRMFSDLARFGALMLVFILGFALAFYSLFGSPSALLPD----GGEISNFETYFSSLLTLFSSMLGTFDFAVFD-GAPMAEAGVVLLVLFLCLMNVTLLNLLIAILTTTHSKVEGNADKEAVLSEALIITQYRRAMRSDSLPSPLNVPQ 2808 E E G+R GPLA A+ E +CSPLV+D L K +AG+ P P N ++G SP +K T +P +Q +L G+ + F+ VPA RLALD +VY ++ ++ + + + + G + PWE+L I+V+ G +G + E G+ S+P+ + +T+V + A++ R+ +V D G+ GE V L A++AP +L ++L + LGP + ++ + + ++ + +LG ALA + ++G S LL GG + F T+ S T+ + G D V D P E VLL +F + L+++L+ +L+ +K L+ A +I + A R + LP P N+ Q Sbjct: 286 ESEAVGMRGAAFEGPLALALQMGWTELVCSPLVLDLLWAKLTAGVELDVHSCGANPAQWYARLPGPSAGSAPAPAVTAATPVHNTAXXXXXXXXXXXXXXXXXXATRVEGVDPRRSSPGHLKNAAASWDITIAPSLQAVLVGVATGPDVFYRVPAARLALDAVVYLLMLAIYTVALYRV-EPGSVDPWEVLLYIWVLSMCFSEVATGVWGVVGDADTDPREGGTAAEPLGQRHRVKRSRKRGSLCSCSSPFFGGKFSTVV-LMAAMMCRLGDYVQDSGGDAVDGEWRCFQGFVALL----ASAAPLLLFRLLGGVAAFLPVLGPTVKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTELPGGSVDGFRTFGVSCRTVARAGFG--DIQVLDEDVPYGEPLYVLLYVFAAAGALGLVSILVGVLSNLKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQ 754
BLAST of mRNA_F-serratus_M_contig989.21168.1 vs. uniprot
Match: A0A835T8Q3_9CHLO (Ion_trans domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T8Q3_9CHLO) HSP 1 Score: 77.4 bits (189), Expect = 2.570e-10 Identity = 54/157 (34.39%), Postives = 91/157 (57.96%), Query Frame = 1 Query: 2344 IHSSLGPLMHSLFRMFSDLARFGALMLVFILGFALAFYSLFGSPSALLPDGGEISNFETYFSSLLTLFSSMLGTFDFAVFDGAPMAEA--GVVLLVLFLCLMNVTLLNLLIAILTTTHSKVEGNADKEAVLSEALIITQYRRAMRSDSLPSPLNVPQ 2808 ++ +LGPL++++ RM ++ F ML+ + GF+ ++F +PD + NF T S+LTLFSSMLG FD ++DG P A+ G+++ V+FL + + LLNLL+AI+T + E A E +A I+ Y+ + + + SP ++ Q Sbjct: 1203 VYPTLGPLLNTVARMMEEVVAFLFPMLIILTGFSTMMSAVFQES---VPD--DYGNFAT---SMLTLFSSMLGNFDLTIYDGLPPAQRLYGIIMSVIFLVISAILLLNLLVAIITNRYRPEEVEA--ETKFKKAQIVNYYQTQVSRNLICSPFSLVQ 1349
BLAST of mRNA_F-serratus_M_contig989.21168.1 vs. uniprot
Match: A0A6H5JX68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX68_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 7.600e-10 Identity = 117/484 (24.17%), Postives = 185/484 (38.22%), Query Frame = 1 Query: 1162 VRECFLGAIAASDWPTNPLIPGLNLSVALIEAIRQSPDFRQPLLE-LRADVDALVLSVLEHLPDTVAGFNRFTPTGITPADLPSKGPLRMKKSLTGLGGVEASLSSTVARGQTNKGLGAIETAPVMGSGISFVQEMLEPELAGL-RAKNCAGPLAQAVHFRH-QEFIC-SPLVVDYLRLKFSAGLPNPFRETDW--RRENGRTDRDL------------------------------------------------------ARFMLDED---ESKLMVYVLQG---------GCADSPRRVKGG----------------DKEKYW--TFSPGMQFILAGLVSKTAAFFGVPAMRLALDVLVYSGVIIVFVLKVVVIRDAGVLTPWELLWLIYVVGAIGQQLREVEETGSIRTHFSNPWNNVETATLVAITTALVFRMWAFVCDGHGEHFCGEQSGEVNEVYLAQYFQAASAPFVLGKVLFLTQ 2343 +++CFLG ++ D NP IPGL+LSVAL E+ + +P+ + LE L+ +DAL+L+VL+ LP T+A F P G+ GG E+ +LEPE+AG+ R ++ GPL A+ R + +C +PL+ +Y+ +F AGLP+ TD RRE RT L R L D +LQG P +GG D E + TF PG QF+L G+++K A++ VP MR+ L V+ + ++ V + D L+ E+ +V+ I L ++ G + + + WN +E+ +L+ + L R+ + +V+ + A SAP V +VLF Q Sbjct: 213 MKDCFLGGLSFVD---NPFIPGLSLSVALEESFKNAPERERRFLEALQKAMDALLLAVLDRLPQTIASF----PGGV--------------------GGCES---------------------------------VLEPEVAGVVRDRDFRGPLRLALQERQFSKTLCIAPLMFEYMCYRFVAGLPDLQDSTDLLGRREERRTRTSLQSSGPVRAPVASAASVSSVCTDGXXXXXXXXXXXXXXXXXXXXXPPLGTRRGRKGRGFLYSDGFVAGSATERLLQGLGWTGRRAAEALTPPPERRGGLPIDVTLCRSDVLVPSDWETVFSGTFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYT-TVALESDDAELSNTEIALTFHVMAEIVSNLLQMR-AGFVE-FWRDKWNWLESLSLLLLAGGLTIRI------------------DNRDVHQGRALFALSAPLVFSRVLFFGQ 615 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig989.21168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig989.21168.1 >prot_F-serratus_M_contig989.21168.1 ID=prot_F-serratus_M_contig989.21168.1|Name=mRNA_F-serratus_M_contig989.21168.1|organism=Fucus serratus male|type=polypeptide|length=1268bp MPLSERKLVFTTEIETDSEDDNRSAISVAIKRGELSLLEAVLKWIPMGQVback to top mRNA from alignment at F-serratus_M_contig989:130375..187357- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig989.21168.1 ID=mRNA_F-serratus_M_contig989.21168.1|Name=mRNA_F-serratus_M_contig989.21168.1|organism=Fucus serratus male|type=mRNA|length=56983bp|location=Sequence derived from alignment at F-serratus_M_contig989:130375..187357- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig989:130375..187357- >mRNA_F-serratus_M_contig989.21168.1 ID=mRNA_F-serratus_M_contig989.21168.1|Name=mRNA_F-serratus_M_contig989.21168.1|organism=Fucus serratus male|type=CDS|length=7608bp|location=Sequence derived from alignment at F-serratus_M_contig989:130375..187357- (Fucus serratus male)back to top |