mRNA_F-serratus_M_contig987.21155.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig987.21155.1
Unique NamemRNA_F-serratus_M_contig987.21155.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig987.21155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig987contigF-serratus_M_contig987:174576..177342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932775.492371-CDS-F-serratus_M_contig987:174575..1747671622932775.492371-CDS-F-serratus_M_contig987:174575..174767Fucus serratus maleCDSF-serratus_M_contig987 174576..174767 +
1690964468.9395003-CDS-F-serratus_M_contig987:174575..1747671690964468.9395003-CDS-F-serratus_M_contig987:174575..174767Fucus serratus maleCDSF-serratus_M_contig987 174576..174767 +
1622932775.5100114-CDS-F-serratus_M_contig987:177291..1773421622932775.5100114-CDS-F-serratus_M_contig987:177291..177342Fucus serratus maleCDSF-serratus_M_contig987 177292..177342 +
1690964468.9520216-CDS-F-serratus_M_contig987:177291..1773421690964468.9520216-CDS-F-serratus_M_contig987:177291..177342Fucus serratus maleCDSF-serratus_M_contig987 177292..177342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig987.21155.1prot_F-serratus_M_contig987.21155.1Fucus serratus malepolypeptideF-serratus_M_contig987 174576..177342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig987.21155.1

>prot_F-serratus_M_contig987.21155.1 ID=prot_F-serratus_M_contig987.21155.1|Name=mRNA_F-serratus_M_contig987.21155.1|organism=Fucus serratus male|type=polypeptide|length=81bp
RRAPGRHIPCRASAATLPSSVERFGSQLAVQNFGDFWLYRVGHCAEGSLP
FHKTRAIELADSTDKENNRGDLTQEGDLVHG
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mRNA from alignment at F-serratus_M_contig987:174576..177342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig987.21155.1 ID=mRNA_F-serratus_M_contig987.21155.1|Name=mRNA_F-serratus_M_contig987.21155.1|organism=Fucus serratus male|type=mRNA|length=2767bp|location=Sequence derived from alignment at F-serratus_M_contig987:174576..177342+ (Fucus serratus male)
CGCCGAGCTCCTGGTCGTCACATCCCTTGTCGCGCGTCTGCCGCGACCCT
GCCTAGTTCGGTAGAGCGGTTCGGGTCGCAACTGGCCGTCCAGAATTTCG
GTGATTTCTGGTTGTACCGAGTTGGCCATTGCGCAGAAGGTTCGTTGCCA
TTCCACAAAACCCGTGCCATCGAACTTGCTGATTCAACGGATAATAAGGT
GGGTGGTCGCTGCAGTAGACTCCATGACGCTCCAGTTTGTTTATTTAGAA
ATTTACGGTAGGTAAGGATGAACGTGCGTCAAACTGAATGTTGTTGAAAC
TCTCCGATCTCCGACCGTAAAACTGTCTCTACCGATGAACACGACGAACC
TGGGAGAACGTCGGTGAATACGCGATGTGCTGATCACGAACGAGGCTCAT
AATATGAAAGTACACAGTGTCAGGGGCTTTTGTGTAAAACAATATCTCAA
GAGAGATGCACAGGGTCAGCACGAAGTGGCGCTGATGCCCACTTGTTTGA
CAGGGGAGACAGATTATTGAAAATAAAGTTGGCGCATATTTGGCCGCGTC
ACAAGCTGGAGACAGAAAAGAGAGAAAACAAAAAGTGATGTCAAAAGAGG
CCCTCAGAGTAATCTACTTCGGGCTATTTCCCAGGTCAATCACTGCGGGC
TGTTTAATTTTCCGACTAACCGAAATAATGATTGATCAAATGTACGTACT
CAGTACAAGACCCAACATACTGTTACGATATTGTTCTTAGTTAGCGCTTA
CTACCGATAGTCCGCTCAAAAGGTATAATAAACGCAAAATGATTGAACAG
CTCGACACAGAGGACAATCGATATTAGACACAAGTGCTCCGTCGCCAGTT
GTTCCAACAGTTGACGTCAACAGACAGGTTGGCATTGTGGCTGACATCCC
CCCGAGGTATACAAACTCGTTCGTTTGATTTTTTGTTGAACGATCTTTGT
ATTTTAGAGGGGTTCAACGATTGGGGAGGGCGGGGATACGACGATTTTAT
TCTGGTGTGTTTATTTCTCCGTATCATCAGCAGCGTAGGGGGGGGGGGGT
AGGGGGAAGCGTTGCCAGATTTTCTTCCTTTCCCTGTTTAGCAGACAAGA
ACAAAAACGGGGCACCCAAAAGCTGCACATGAACACCAACATGAAATAGT
GTGGATACCTGTGCGACAATGATAGATAGTACCTGGTATATTTTACAATC
GAGTCCGCTTTAAGTGTACGATCCCAAACCCAATATATAACATAACTGAA
TTGCATCCAGATTTAACGTGTGTTCTGCCTCACTTTATTTAAAGAAGGCA
GCATAAAACGTAAAACAATAACATAAAAAATTAAAAGTATAATAATTAAC
CAACAAACTTGGTTAAAAACAGTCATTATATCAAATTGAGGCATATATTT
AAAAATAAAAGTGACCGGCAAGATAAACCTTTAAAACACGACTTTTTGGT
GTCCCTGCATTGCGGTAAATGTAGGTATACAGTGCAACCGTGTTACGGCG
GGCTTTTCCTTTATGTTATACTGTTGACCCTATGCTACTACCATTCATTG
GTGAATCCAATTAACTGCCATGGAGGTTTGCGTCTTTGCAACAGCCAGTA
ACAATTTTCCTACCTAAATGCTTTGACATTCCCCCCCCTGAATGCGTGGA
TGACATTAACAGAAGATTTTGATGTTTTCATATTTTTCTTCAAGCAACCA
TTGCCGAGAGTACGCCGGCACAGGGCCAGTAGAAGACCTCAACACATTTT
CATTAACGAGTGCTGCCTACTCGGGTATCACCGAGCGCTATGGTAGGAGG
AGTACTAATGAACAGTGGCACTTATGTAGACAAAAGAGAGGGTAGGACTG
CGGTTGTTAGAGATACAGCAGGTAAGGGTCGGAAGAGGTGTGTACATGCA
TGCTTGAACGTCATCGTCAGGGAGTGCAAATAAACAGTGGCACTTTTGTA
GGCAAAGAGGGTGGAAATGCTATTAGAGATGCAGCAGCAAATAAGTCTCG
GAGGAGGTATGCACATGCATGCTGGAACGTTGTAGAATGGGGAGTTATAA
TGAACAGTGGCACTTATTATGTAGACAAACGAGGGGGTGGAAATGCTATT
GTATACATAGAATACCAACATATATGTACATAACAGATAAAAATAAGCAA
TTGCCACAGAACCAGCCCTGGCGACGCTGCTACGAGGGCAAAAACTGTTT
CCACCCTCTAGGGGGGAACATAGCATACCCCCAGGCCCTTGCTATTGTAA
TTAATATATATATATATATATATGTAGAACCTAACCCTAAGGCGTCTGGC
CTCACCGTATCGGACGCCAAAACTGAAATAATGTGTTTCGCACAATCCAC
CGCCATATTGAGCGTAGATGCAGCGGGTCAGGTGTACAACCAAACGAACG
AGTTCGTACACCTCGGGGGGGTACGTCAACCACAATGACGACCTCGCTAT
CAGCGTCGACCGGCGTATATGCAACGCATGGTGAAGCTTCCGGTAGAACG
ACCGACCAAGCGCTCCCTTTGCGAACTCCGGATGCTAAGAACCGAAGTAC
TCGAGACAATACTGTACGGCTACGTCACGTGAAGCTTGCGCGCGTGACAT
TACCACACGCTGCACGGTGCTCACCACAGCTTCCTGACTTGCTGCATCGG
TTGGCGAAAGAATAATTGCTACGCTGATCACCCGACTTTCAACCTGGACG
CACTTATCAAAACGGGAAGGAAAATAATCGAGGCGACCTTACGCAGGAGG
GGGATCTTGTTCACGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig987:174576..177342+

>mRNA_F-serratus_M_contig987.21155.1 ID=mRNA_F-serratus_M_contig987.21155.1|Name=mRNA_F-serratus_M_contig987.21155.1|organism=Fucus serratus male|type=CDS|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig987:174576..177342+ (Fucus serratus male)
CGCCGAGCTCCTGGTCGTCACATCCCTTGTCGCGCGTCTGCCGCGACCCT
GCCTAGTTCGGTAGAGCGGTTCGGGTCGCAACTGGCCGTCCAGAATTTCG
GTGATTTCTGGTTGTACCGAGTTGGCCATTGCGCAGAAGGTTCGTTGCCA
TTCCACAAAACCCGTGCCATCGAACTTGCTGATTCAACGGATCGCCGAGC
TCCTGGTCGTCACATCCCTTGTCGCGCGTCTGCCGCGACCCTGCCTAGTT
CGGTAGAGCGGTTCGGGTCGCAACTGGCCGTCCAGAATTTCGGTGATTTC
TGGTTGTACCGAGTTGGCCATTGCGCAGAAGGTTCGTTGCCATTCCACAA
AACCCGTGCCATCGAACTTGCTGATTCAACGGATAAGGAAAATAATCGAG
GCGACCTTACGCAGGAGGGGGATCTTGTTCACGGGAAGGAAAATAATCGA
GGCGACCTTACGCAGGAGGGGGATCTTGTTCACGGG
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