mRNA_F-serratus_M_contig981.21121.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig981.21121.1
Unique NamemRNA_F-serratus_M_contig981.21121.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig981.21121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig981contigF-serratus_M_contig981:132935..133656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932766.8971047-CDS-F-serratus_M_contig981:132935..1331291622932766.8971047-CDS-F-serratus_M_contig981:132935..133129Fucus serratus maleCDSF-serratus_M_contig981 132936..133129 -
1690964464.0959713-CDS-F-serratus_M_contig981:132935..1331291690964464.0959713-CDS-F-serratus_M_contig981:132935..133129Fucus serratus maleCDSF-serratus_M_contig981 132936..133129 -
1622932766.9109356-CDS-F-serratus_M_contig981:133595..1336561622932766.9109356-CDS-F-serratus_M_contig981:133595..133656Fucus serratus maleCDSF-serratus_M_contig981 133596..133656 -
1690964464.1141217-CDS-F-serratus_M_contig981:133595..1336561690964464.1141217-CDS-F-serratus_M_contig981:133595..133656Fucus serratus maleCDSF-serratus_M_contig981 133596..133656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig981.21121.1prot_F-serratus_M_contig981.21121.1Fucus serratus malepolypeptideF-serratus_M_contig981 132936..133656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig981.21121.1

>prot_F-serratus_M_contig981.21121.1 ID=prot_F-serratus_M_contig981.21121.1|Name=mRNA_F-serratus_M_contig981.21121.1|organism=Fucus serratus male|type=polypeptide|length=85bp
TGTLLCPAAVESQGKCSGCVGGIQVAIAGDLRGTYRTCLGHRYSWSRSAA
RRPCAAFWRAILASRWMNGGRERNVAGRKGMPNPS
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mRNA from alignment at F-serratus_M_contig981:132935..133656-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig981.21121.1 ID=mRNA_F-serratus_M_contig981.21121.1|Name=mRNA_F-serratus_M_contig981.21121.1|organism=Fucus serratus male|type=mRNA|length=722bp|location=Sequence derived from alignment at F-serratus_M_contig981:132935..133656- (Fucus serratus male)
ACCGGAACCCTGCTCTGTCCTGCTGCAGTTGAATCTCAAGGCAAATGCTC
TGGGTGTGTAGGTACTACTGTTAATACTGTAGGAAGGCGTGTACGAAGTA
ATTTGTAGAGAGATGTTGAAGATCCAAGTTGTTTCGCGTTGTCAATGAGA
ACTATAATACTGCTGTTAGTGCTTTGTATGTCTAGTGTATGTTGCCAGTC
CAAAGATCTCAAGATCCTTTTGTTTTGAATTCCAGCAGAATAACAAAAAA
TGGAAAACTTGGGAAAGGCATTTTTTTTGCCAACACTTCTTCCGAAGCCA
CCTTTCCTCGCGAAGGCAAAGCAAGCCTTGTTGATGACAGGCTTTGTAAA
ATTCTACATTATTCTCCGGAACAGTATACCGATACTTCTCCCTACCCTCA
CAGCCACCGTATCCCTCCTACCGCGTTTTTTTCCGCGACGCTCTTCCTCA
GAGCAGTCGTCGGTGAGACACACGATACAGAACGCCACCTGACGCCCCGT
CTTATCCTCCGTCCATACGAGCGGCAGGTGGGATTCAGGTGGCCATCGCC
GGCGATTTGCGGGGGACTTATCGGACATGTCTGGGCCACAGGTACTCTTG
GTCGCGCTCGGCCGCGCGGCGTCCATGCGCAGCCTTTTGGAGAGCCATTT
TAGCGAGCAGATGGATGAACGGAGGCAGGGAGAGGAATGTGGCAGGGAGA
AAAGGCATGCCGAACCCTTCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig981:132935..133656-

>mRNA_F-serratus_M_contig981.21121.1 ID=mRNA_F-serratus_M_contig981.21121.1|Name=mRNA_F-serratus_M_contig981.21121.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig981:132935..133656- (Fucus serratus male)
ACCGGAACCCTGCTCTGTCCTGCTGCAGTTGAATCTCAAGGCAAATGCTC
TGGGTGTGTAGACCGGAACCCTGCTCTGTCCTGCTGCAGTTGAATCTCAA
GGCAAATGCTCTGGGTGTGTAGGTGGGATTCAGGTGGCCATCGCCGGCGA
TTTGCGGGGGACTTATCGGACATGTCTGGGCCACAGGTACTCTTGGTCGC
GCTCGGCCGCGCGGCGTCCATGCGCAGCCTTTTGGAGAGCCATTTTAGCG
AGCAGATGGATGAACGGAGGCAGGGAGAGGAATGTGGCAGGGAGAAAAGG
CATGCCGAACCCTTCAGTGGGATTCAGGTGGCCATCGCCGGCGATTTGCG
GGGGACTTATCGGACATGTCTGGGCCACAGGTACTCTTGGTCGCGCTCGG
CCGCGCGGCGTCCATGCGCAGCCTTTTGGAGAGCCATTTTAGCGAGCAGA
TGGATGAACGGAGGCAGGGAGAGGAATGTGGCAGGGAGAAAAGGCATGCC
GAACCCTTCA
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