mRNA_F-serratus_M_contig981.21120.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig981.21120.1 vs. uniprot
Match: M2XZ59_GALSU (9-cis-epoxycarotenoid dioxygenase, neoxanthin cleavage enzyme-like protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XZ59_GALSU) HSP 1 Score: 258 bits (659), Expect = 1.620e-76 Identity = 152/409 (37.16%), Postives = 229/409 (55.99%), Query Frame = 1 Query: 52 GSIPEDIEGTWFRNGPAKFKIGNDLVKHPFDGDGMVMAISFSKEGAYFRNRFVRTKGFVKELEAGKQLYRGF--SNIPGGLLRNAFRIGRKNVANTNVHFWGGNLLALWEGGLPYRLDAKSLDTLGETKLGGTIDEKRPTFTAHPRIDVINQRLVGFGS----HNMQEVTLYEYDKNFKLVKS-RLMKDVKGMLHDFVVTDDHYVFYSGPVGLNPLKWVLGLDTMGSAIKWEGQKRGARVYVVPRDP------SKTTKTIDIPAGFCFHLANGFQDPNTGE--LVLDVVESEFLL---LDNKKEGDKPLWENIDFPEEVPQNKLQRYRMDLSSPEGAFSSKTILYNKILDFPVVS----CREHRYVWASCGRVESEEACPVQGVVKVDTQTGIIEK--WLPSPHEFLSE 1206 G IP+D+ GT +RNGPAKF++G LVKHP+DGDGM+ AIS S G +FRNRFVRTKG++ E AGK LYRG + PGG + NAF + KNVANT V W L A WE G+PY+L+ +L T G T+ G I K FTAHP+ID+ L+GF + + E+T +E F+ KS + + G HDF VT+D+YV + GP+ NPL ++LG+ + I ++ A++ ++ R+ + + GF FH AN ++ L++D+V+ L + D L+EN++ E VP++ L RY + + E + L ++ ++FP + + H +++AS + S+ P QG+ K+DT G ++ W+P P+EF E Sbjct: 126 GKIPKDLRGTLYRNGPAKFEVGKILVKHPWDGDGMITAISISDNGVWFRNRFVRTKGYMAEQAAGKVLYRGTFGTQKPGGWIANAFDLSMKNVANTGVVHWDNRLFAFWEAGVPYQLNPSNLATAGPTQFQGAI-LKSGNFTAHPKIDLQTGCLIGFSTKAYPRSGTEITFHEMKPGFQWRKSIKALIPGFGFYHDFAVTEDYYVLFQGPLEFNPLPFILGVRPVADCIH-SCLEKPAKIILISRNSVTEDGYAAHVHILSTETGFVFHFANAYEQGEGANRTLIVDLVKVRRYYAAELKTDRSQDPCLYENLE--ERVPKSCLYRYIVSIGKSEPFILDQLALSSRQVEFPGIHPFFMSKCHSFIYASTSGL-SDGVAPFQGIAKIDTNKGSQKEQVWIPQPYEFAGE 529
BLAST of mRNA_F-serratus_M_contig981.21120.1 vs. uniprot
Match: UPI001C0168C2 (carotenoid oxygenase family protein n=1 Tax=Leptothoe kymatousa TaxID=2651727 RepID=UPI001C0168C2) HSP 1 Score: 254 bits (649), Expect = 1.880e-76 Identity = 162/419 (38.66%), Postives = 234/419 (55.85%), Query Frame = 1 Query: 1 GYEDADSEDQYLMEPSEGSIPEDIEGTWFRNGPAKFKIGNDLVKHPFDGDGMVMAISFSKEGAYFRNRFVRTKGFVKELEAGKQLYRGF--SNIPGGLLRNAFRIGRKNVANTNVHFWGGNLLALWEGGLPYRLDAKSLDTLGETKLGGTIDEKRPTFTAHPRIDV----INQR--LVGFGSHN--MQEVTLYEYDKNFKLVKSRLMKDVKGM--LHDFVVTDDHYVFYSGPVGLNPLKWVLGLDTMGSAIKWEGQKRGARVYVVPRDPSKTTKTIDIPAGFCFHLANGFQDPNTGELVLD-VVESEFLLLDNKKEGDKPLWENIDFPEEVPQNKLQRYRMDLSSPEGAFSSKTILYNKILDFPVVSC----REHRYVWASCGRVESEEACPVQGVVKVDTQTGIIEKWLPSPHEFLSE 1206 GY +E Y +E EG+IP D++GT FRNGP +G V HPFDGDGM+ AIS AYFRNRFVRT+G+VKE AGK LYRG + PGG L NAF + KN+ANTNV +WGG LLALWE P++LD +L+TLG L G + + +F+AHPRID NQ+ LV FG +++YE+ N +L ++ G LHDF +T ++ +F+ PV NP+ ++ GL I++ K+ R ++PRD + +TID+ F FH AN F+ G+L LD V EF L + + DF +P+ +L R+ +DL +G+ ++ +L + +FP ++ R +RY++ +S+ P+Q ++K D TG E W +P F E Sbjct: 21 GYRSQPNEYAYEIEDIEGTIPPDLQGTLFRNGPGLLDVGGQPVHHPFDGDGMITAISIGDGKAYFRNRFVRTEGYVKEQAAGKPLYRGVFGTQKPGGPLANAFDLRLKNIANTNVIYWGGKLLALWEAAEPHQLDVTTLETLGLEYLDGVL-KPGESFSAHPRIDPSCDRTNQQPCLVNFGVKTGLSSTISIYEFATNGRLAHIH-RHNIPGFAFLHDFAITPNYCIFFQNPVSFNPVPYLAGLKGAAECIQFN-PKQPTRAIIIPRDGTSPVQTIDLQPCFVFHHANAFE--TDGKLYLDSVCYQEFPDLKGAEN-----YLEADFSR-IPEGQLWRFELDLD--QGSSQAQCLL-ERGCEFPHLNPNHVGRPYRYLYIGVAH-QSQGNAPLQAILKRDLDTGKEEIWSFAPRGFAGE 424
BLAST of mRNA_F-serratus_M_contig981.21120.1 vs. uniprot
Match: A0A0G4EKI7_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EKI7_VITBC) HSP 1 Score: 259 bits (661), Expect = 2.850e-76 Identity = 166/444 (37.39%), Postives = 239/444 (53.83%), Query Frame = 1 Query: 52 GSIPEDIEGTWFRNGPAKFKIGNDLVKHPFDGDGMVMAISFSKEGAYFRNRFVRTKGFVKELEAGKQLYRGFSNIP--GGLLRNAFRIGRKNVANTNVHFWGGNLLALWEGGLPYRLDAKSLDTLGETKLGGTIDEKRPTFTAHPRIDVINQRLVGFGSHNM---QEVTLYEYDKNFKLVKSRLMKDVKGM--LHDFVVTDDHYVFYSGPVGLNPLKWVLGLDTMGSAIKWEGQKRGARVYVVPRD------PSKTT--------------------------------KTIDIPAGFCFHLANGFQDPNTGELVLDVVESEFLLLD-------NKKEGDK--PLWENIDFPEEVPQNKLQRYRMDLSSPEGAFS-SKTILYNKILDFPVVSC----REHRYVWASCGRVESEEACPVQGVVKVDTQTGIIEKWLPSPHEFLSE 1206 G++P DI+GT+FRNG KF+IG DLV HPFDGDGMV AI+FS AYFR+++V+TKG+VKE + G+ +RG GG LR+ + KNVANT V +W LLALWE G PY LD SL TL E+ L G + ++ AH +ID LV FG +V+++E+D +FKL+K R + + G+ LHDF +TD++Y+F P+ L+PL W+LG +G A+ + R AR+Y+VPR+ P TT + +D+ F FH AN +++ N G LV+D+ SE D N K P+W +++P+ +L RYR+ S + K L + +FPV++ + +RYV+ G SE A P+QG++K+D +T W P HEF E Sbjct: 67 GTVPADIKGTYFRNGHGKFQIGEDLVLHPFDGDGMVAAITFSNGRAYFRSQYVKTKGYVKEQKEGRICFRGVFGTAKRGGWLRSFLDLRVKNVANTGVLWWNRKLLALWEQGRPYALDPISLSTLRESSLNGLL-KRGGVMAAHYKIDPKTNCLVAFGCQIRPVSSKVSVWEFDPSFKLLKQRSFR-MPGLAFLHDFAITDNYYLFIQPPLSLHPLPWLLGKCGIGQALSFHPD-RPARLYIVPRNREQQRQPHTTTGGRRWLGWASCVWMALGVWMAKGKRRERADGIRCVDLDPFFIFHFANAYEEEN-GNLVIDIDRSERYTFDLTLRTASNPHPIPKHTPIWLFDQVEKKIPKIELFRYRITTSGSGRPLAYDKRPLLKRFTEFPVINPANVGQRYRYVYGLAGGDPSESA-PLQGILKLDVETKEASYWFPDAHEFCGE 505
BLAST of mRNA_F-serratus_M_contig981.21120.1 vs. uniprot
Match: A0A846FJ26_9CYAN (Dioxygenase n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FJ26_9CYAN) HSP 1 Score: 254 bits (648), Expect = 2.930e-76 Identity = 160/419 (38.19%), Postives = 226/419 (53.94%), Query Frame = 1 Query: 1 GYEDADSEDQYLMEPSEGSIPEDIEGTWFRNGPAKFKIGNDLVKHPFDGDGMVMAISFSKEGAYFRNRFVRTKGFVKELEAGKQLYRGF--SNIPGGLLRNAFRIGRKNVANTNVHFWGGNLLALWEGGLPYRLDAKSLDTLGETKLGGTIDEKRPTFTAHPRIDVINQR------LVGFGSHN--MQEVTLYEYDKNFKLVKSRLMKDVKGM--LHDFVVTDDHYVFYSGPVGLNPLKWVLGLDTMGSAIKWEGQKRGARVYVVPRDPSKTTKTIDIPAGFCFHLANGFQDPNTGELVLD-VVESEFLLLDNKKEGDKPLWENIDFPEEVPQNKLQRYRMDLSSPEGAFSSKTILYNKILDFPVVSC----REHRYVWASCGRVESEEACPVQGVVKVDTQTGIIEKWLPSPHEFLSE 1206 GY E Y ++ EG IP ++EGT FRNGP + + HPFDGDGMV AI+FS+ AY+RNRFVRT GFV E +A K LYRG + PGG L NAF + KN+ANTNV +WG LLALWE PYRLD ++L+T+G L G + P F+AHPRID R LV F +T+YE+D +LVK + G LHDF +T ++ +F+ PV NPL +V+G +++ + V V+PRD + I+ F FH AN F+ ++ L +D + F LD K+ ++ IDF +EVP +L R+++DL + + L + +FP ++ R RY++ A P+Q ++KVD TG + W +P F+SE Sbjct: 24 GYRSQPEEFDYWIDQVEGQIPHELEGTLFRNGPGLLDVNGQRLHHPFDGDGMVSAIAFSQGRAYYRNRFVRTTGFVAEQQANKVLYRGTFGTQKPGGWLANAFDLRLKNIANTNVIYWGDKLLALWEAAEPYRLDPRTLETMGPELLDGLLAVGSP-FSAHPRIDPHGGRTEEQPCLVNFSVKPGLSSTITIYEFDPTGQLVKEHA-HSIPGFAFLHDFAITPNYCIFFQNPVTFNPLPYVVGFKGAAECLQFR-PNQPTLVIVIPRDGQAAVQMIETEPCFVFHHANAFEQGDS--LYIDSICYDTFPSLDTHKD-----YQQIDF-DEVPVGQLWRFQLDLKAKTA---QRQCLIKRGCEFPSLNPEQVGRNCRYLYLGTTHAPEGNA-PLQALLKVDLTTGAQQYWSAAPRGFMSE 427
BLAST of mRNA_F-serratus_M_contig981.21120.1 vs. uniprot
Match: UPI0020217F10 (carotenoid oxygenase family protein n=1 Tax=Chroococcidiopsis sp. CCMEE 29 TaxID=155894 RepID=UPI0020217F10) HSP 1 Score: 253 bits (647), Expect = 3.820e-76 Identity = 156/418 (37.32%), Postives = 231/418 (55.26%), Query Frame = 1 Query: 1 GYEDADSEDQYLMEPSEGSIPEDIEGTWFRNGPAKFKIGNDLVKHPFDGDGMVMAISFSKEGAYFRNRFVRTKGFVKELEAGKQLYRGF--SNIPGGLLRNAFRIGRKNVANTNVHFWGGNLLALWEGGLPYRLDAKSLDTLGETKLGGTIDEKRPTFTAHPRIDVINQR------LVGFGSHNMQE--VTLYEYDKNFKLVKSRLMKDVKGM--LHDFVVTDDHYVFYSGPVGLNPLKWVLGLDTMGSAIKWEGQKRGARVYVVPRDPSKTTKTIDIPAGFCFHLANGFQDPNTGELVLDVVESEFLLLDNKKEGDKPLWENIDFPEEVPQNKLQRYRMDLSSPEGAFSSKTILYNKILDFPVVSC----REHRYVWASCGRVESEEACPVQGVVKVDTQTGIIEKWLPSPHEFLSE 1206 GYE E Y ++ EG IP ++ GT FRNGP + + HPFDGDGM+ AI+F A+FRNRF+RT G+++E +AGK LYRG + PGG L NAF KN+ANTNV +WGG LLALWE P+RLD +L+TLG+ L G + E F AHPR D + LV F +T++E D K+V+ V G +HDF +T ++ +F+ PV NPL +V GL G IK++ + RV ++PR SK+ K ++ +GF FH AN F+ + E+V+D + E L + G ++ +DF P +L R+ ++L S+ ++ ++ +FP + R +RY++ ES A P+Q ++KVD ++G + W +P F+SE Sbjct: 26 GYESLKQEGNYWIDDVEGQIPTELHGTLFRNGPGLLDVNGQPIHHPFDGDGMISAIAFHNGRAHFRNRFIRTTGYLEEQKAGKILYRGVFGTQKPGGWLANAFDFRLKNIANTNVIYWGGKLLALWEAADPHRLDPHTLETLGKDSLNGVLAEGE-AFAAHPRFDPSCGQDGGAPCLVNFSIKPALSTTITIFELDSTAKVVRKHA-HSVPGFAFIHDFAITPNYCIFFQNPVAFNPLPFVFGLRGPGECIKFQPHQP-TRVILIPRHTSKSVKILETQSGFVFHHANAFEQGD--EVVIDSICYESLP--EVEPGSD--FKQVDFDALQP-GQLWRFHLNLKDKAV---SRELIEDRCCEFPSMHKERVGRPYRYLYMGAADAESGNA-PLQAILKVDLESGERQIWSAAPRGFVSE 429 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig981.21120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig981.21120.1 >prot_F-serratus_M_contig981.21120.1 ID=prot_F-serratus_M_contig981.21120.1|Name=mRNA_F-serratus_M_contig981.21120.1|organism=Fucus serratus male|type=polypeptide|length=402bp GYEDADSEDQYLMEPSEGSIPEDIEGTWFRNGPAKFKIGNDLVKHPFDGDback to top mRNA from alignment at F-serratus_M_contig981:76309..104099+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig981.21120.1 ID=mRNA_F-serratus_M_contig981.21120.1|Name=mRNA_F-serratus_M_contig981.21120.1|organism=Fucus serratus male|type=mRNA|length=27791bp|location=Sequence derived from alignment at F-serratus_M_contig981:76309..104099+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig981:76309..104099+ >mRNA_F-serratus_M_contig981.21120.1 ID=mRNA_F-serratus_M_contig981.21120.1|Name=mRNA_F-serratus_M_contig981.21120.1|organism=Fucus serratus male|type=CDS|length=2412bp|location=Sequence derived from alignment at F-serratus_M_contig981:76309..104099+ (Fucus serratus male)back to top |