mRNA_F-serratus_M_contig981.21119.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig981.21119.1
Unique NamemRNA_F-serratus_M_contig981.21119.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Match: D8LG20_ECTSI (Peroxyredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG20_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 1.940e-95
Identity = 143/165 (86.67%), Postives = 150/165 (90.91%), Query Frame = 1 
Query:    1 SRLAMGLKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTCSDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTMLADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTDKSSGDSVLAAL 495
            SRLAM +KEGDKFPMDSTFQI  + GP+DVPASEIF+GKKVVICGVPGAFTPTC DNHLPSFIA  DKFKEKGVDTVACMSVNDAFVM RWI SL A D+VTMLADGG VFAEESGL VKTGKFGG RLQRLAMIVNDGTIEKLFLE+GTGYTD SSGD+VLAAL
Sbjct:   41 SRLAMAIKEGDKFPMDSTFQIKGDAGPADVPASEIFAGKKVVICGVPGAFTPTCDDNHLPSFIANADKFKEKGVDTVACMSVNDAFVMSRWIKSLDAEDKVTMLADGGAVFAEESGLCVKTGKFGGTRLQRLAMIVNDGTIEKLFLEDGTGYTDVSSGDTVLAAL 205
[Close]
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Match: B7ZGN1_9PHAE (Peroxyredoxin n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN1_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 7.630e-90
Identity = 132/161 (81.99%), Postives = 147/161 (91.30%), Query Frame = 1 
Query:   13 MGLKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTCSDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTMLADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTDKSSGDSVLAAL 495
            M +KEGDKFP  ++FQIL +GGP+DVPA+++F+GKKVVICGVPGAFTPTCSD+HLPSFIAL D+FK KGVDTVAC+SVNDAFVM RWI SL A+D+VTMLADGGGVFAEESGL VKTGKFGG RLQRLAMIVNDGTIEKLFLE+GTGYTD SSG  VLAAL
Sbjct:    1 MAIKEGDKFPAGTSFQILGDGGPADVPAADVFAGKKVVICGVPGAFTPTCSDDHLPSFIALADEFKAKGVDTVACLSVNDAFVMSRWIKSLDAADKVTMLADGGGVFAEESGLCVKTGKFGGTRLQRLAMIVNDGTIEKLFLEDGTGYTDLSSGAGVLAAL 161
[Close]
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Match: A0A836CPD9_9STRA (Peroxyredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD9_9STRA)

HSP 1 Score: 205 bits (521), Expect = 1.790e-64
Identity = 100/164 (60.98%), Postives = 125/164 (76.22%), Query Frame = 1 
Query:    4 RLAMGLKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTCSDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTMLADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTDKSSGDSVLAAL 495
            RLAM LKEGDK PMD+TFQ L +G P+ V A+++F+GKKVVICGVPGA TPTCS++H+P+FI   D FK KGVDTVA +SVND FVM  W   L   D + ML DG   FA+ +GLN+ TG FGG+RL+R+AM+VNDG +EKL +E+G G+TD S   S+LAAL
Sbjct:   37 RLAMVLKEGDKLPMDATFQRLVDGKPTPVSAADLFAGKKVVICGVPGAMTPTCSESHVPTFINAIDDFKAKGVDTVAVISVNDPFVMSAWGKKLEVGDSIMMLGDGSAAFAKSTGLNMDTGDFGGVRLKRMAMLVNDGVVEKLGVEDGGGFTDISDAKSILAAL 200
[Close]
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Match: A0A7S2UXP0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXP0_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.120e-62
Identity = 97/165 (58.79%), Postives = 126/165 (76.36%), Query Frame = 1 
Query:    1 SRLAMGLKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTCSDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTMLADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTDKSSGDSVLAAL 495
            S LAM + EGDK P+D  FQ+L +G PS++PASE+F+GKKV ICG+PGAFTPTCS+ HLP FI + +  K KGVDTV C+SVND FVM  W   LGA D+VTMLADGG  FA+ +GL+  TG FGG RL+RL+M+V+DG I KL +E+G+ +TD SS +++L  +
Sbjct:   34 SSLAM-VAEGDKIPLDGVFQLLADGKPSELPASELFAGKKVAICGLPGAFTPTCSNTHLPGFIEVAEDIKAKGVDTVCCISVNDPFVMGAWGKQLGADDKVTMLADGGAAFAKATGLDFDTGSFGGTRLKRLSMLVDDGVISKLNVEDGSAFTDISSAETLLGQI 197
[Close]
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Match: A0A7S2UXL6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXL6_9STRA)

HSP 1 Score: 199 bits (506), Expect = 3.620e-62
Identity = 96/163 (58.90%), Postives = 125/163 (76.69%), Query Frame = 1 
Query:    7 LAMGLKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTCSDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTMLADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTDKSSGDSVLAAL 495
            LAM + EGDK P+D  FQ+L +G PS++PASE+F+GKKV ICG+PGAFTPTCS+ HLP FI + +  K KGVDTV C+SVND FVM  W   LGA D+VTMLADGG  FA+ +GL+  TG FGG RL+RL+M+V+DG I KL +E+G+ +TD SS +++L  +
Sbjct:   40 LAM-VAEGDKIPLDGVFQLLADGKPSELPASELFAGKKVAICGLPGAFTPTCSNTHLPGFIEVAEDIKAKGVDTVCCISVNDPFVMGAWGKQLGADDKVTMLADGGAAFAKATGLDFDTGSFGGTRLKRLSMLVDDGVISKLNVEDGSAFTDISSAETLLGQI 201
[Close]
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Match: A0A836CG28_9STRA (Peroxyredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG28_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.720e-55
Identity = 90/161 (55.90%), Postives = 113/161 (70.19%), Query Frame = 1 
Query:   13 MGLKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTCSDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTMLADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTDKSSGDSVLAAL 495
            M LKEGD  PMD+ F  L +G P++VPA+++F+GKKV ICGVPGA TPTCS+ HLP FIA  ++ K KGVDTVAC+SVND FVM  W   L   D+V MLADGG  FA+  G    T  FGGIRL+RLAM+V DG ++KL +E+G  +   S   ++L AL
Sbjct:    1 MALKEGDMVPMDAVFSRLVDGKPTNVPAADLFAGKKVAICGVPGAMTPTCSEKHLPGFIAALEELKSKGVDTVACISVNDPFVMGAWGKKLECDDKVMMLADGGANFAKAIGHEFDTKDFGGIRLKRLAMLVKDGVVQKLGVEDGGAFEGASDVKTILEAL 161
[Close]
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Match: A0A7R9U532_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U532_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.780e-51
Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 1 
Query:   19 LKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTCSDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTMLADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTDKSSG---DSVLAAL 495
            +  GD  PMD  F  L  GGP  +   E+F GKKVV+ GVPGA TPTCS+ H+P F++  D+FK KGVD++A +SVND FVM  W   LGA D+V MLADGG  F   + +   TG FGG R  R++M+VNDG +E++F+EEG GYT+   G   D +LA L
Sbjct:   35 ISVGDSVPMDGEFMTLGSGGPGPLKYDEVFKGKKVVVVGVPGALTPTCSEKHVPGFLSKQDEFKAKGVDSIAVLSVNDPFVMGVWKEKLGAGDDVAMLADGGAQFVSAADIGFDTGGFGGTRCTRMSMLVNDGKVEQVFMEEGGGYTESGEGSNADHMLAQL 196
[Close]
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Match: M2X227_GALSU (Peroxiredoxin (Alkyl hydroperoxide reductase subunit C) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X227_GALSU)

HSP 1 Score: 171 bits (433), Expect = 8.090e-51
Identity = 82/163 (50.31%), Postives = 109/163 (66.87%), Query Frame = 1 
Query:    7 LAMGLKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTCSDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTMLADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTDKSSGDSVLAAL 495
            L M +  G +FP D TF  L+EG   ++ ASEIF+GKKVVI GVPGAFTP+CSD HLP F   +DKFKEKG+DTV C++ ND +VM  W    G   ++ ML+DG G   EE GL+V TG FGG R +R +  V +G ++ L LE GT +T+ S+ + VL+ +
Sbjct:   60 LMMIISNGSRFPEDVTFTTLQEGQVKEMKASEIFNGKKVVIFGVPGAFTPSCSDKHLPGFAENFDKFKEKGIDTVICLAANDPYVMNAWAKQKGVDGKILMLSDGSGAVLEELGLSVNTGNFGGRRARRFSAYVENGVVKNLNLENGTSFTETSAAERVLSQI 222
[Close]
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Match: A0A5S9IM09_9BACT (Glutathione-dependent peroxiredoxin n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IM09_9BACT)

HSP 1 Score: 166 bits (421), Expect = 7.030e-50
Identity = 87/159 (54.72%), Postives = 113/159 (71.07%), Query Frame = 1 
Query:   19 LKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTCSDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTMLADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTDKSSGDSVLAAL 495
            +K GDK P + TFQ + +G P ++  +++FSGKKVV+  VPGAFTPTCS+ HLP F+AL DK KEKGVDTVAC +VNDAF+M  W  S GA + ++MLADG G FA+  G    TG FGGIR  R A++ NDG +E +F+EE   +T  SS ++VL AL
Sbjct:    2 IKVGDKLP-EVTFQQMCDGKPQNLSTNDVFSGKKVVVFAVPGAFTPTCSEQHLPGFVALCDKIKEKGVDTVACTAVNDAFIMDAWQKSRGA-ENISMLADGSGQFAKAIGAEKDTGIFGGIRSNRYALVANDGVVEHVFVEEPGKFT-VSSAEAVLEAL 157
[Close]
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Match: M2XVK1_GALSU (Peroxiredoxin (Alkyl hydroperoxide reductase subunit C) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVK1_GALSU)

HSP 1 Score: 166 bits (420), Expect = 2.690e-49
Identity = 78/159 (49.06%), Postives = 113/159 (71.07%), Query Frame = 1 
Query:   19 LKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTCSDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTMLADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTDKSSGDSVLAAL 495
            LKEG +   D  FQIL+EG P  + + ++FSGKKVV+ G+PGAFTPTCS  HLP F    D+ K KGVDTVAC++VND FV+++W  S G + ++ MLADGG    ++ GL++ TG FGGIR +R + ++++  ++K+ LEEGTG++  SS +++L  L
Sbjct:   31 LKEGSRILSDLKFQILQEGKPQVITSDQVFSGKKVVLFGLPGAFTPTCSRQHLPGFGQKVDEIKSKGVDTVACLAVNDPFVLQQWAESQGVAGKILMLADGGAQSVKKLGLDIDTGDFGGIRCRRFSSLIDNFVVKKIHLEEGTGFSGASSAETILKDL 189
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig981.21119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG20_ECTSI1.940e-9586.67Peroxyredoxin n=1 Tax=Ectocarpus siliculosus TaxID... [more]
B7ZGN1_9PHAE7.630e-9081.99Peroxyredoxin n=1 Tax=Laminaria digitata TaxID=803... [more]
A0A836CPD9_9STRA1.790e-6460.98Peroxyredoxin n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S2UXP0_9STRA1.120e-6258.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UXL6_9STRA3.620e-6258.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CG28_9STRA2.720e-5555.90Peroxyredoxin n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7R9U532_9STRA1.780e-5151.23Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
M2X227_GALSU8.090e-5150.31Peroxiredoxin (Alkyl hydroperoxide reductase subun... [more]
A0A5S9IM09_9BACT7.030e-5054.72Glutathione-dependent peroxiredoxin n=1 Tax=Candid... [more]
M2XVK1_GALSU2.690e-4949.06Peroxiredoxin (Alkyl hydroperoxide reductase subun... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig981contigF-serratus_M_contig981:7963..16797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.3
Seed ortholog evalue4.5e-72
Seed eggNOG ortholog2880.D8LG20
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG0678@1,KOG0541@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size498
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig981.21119.1prot_F-serratus_M_contig981.21119.1Fucus serratus malepolypeptideF-serratus_M_contig981 7975..16797 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932767.2090974-UTR-F-serratus_M_contig981:7962..79741622932767.2090974-UTR-F-serratus_M_contig981:7962..7974Fucus serratus maleUTRF-serratus_M_contig981 7963..7974 +
1690964464.2395647-UTR-F-serratus_M_contig981:7962..79741690964464.2395647-UTR-F-serratus_M_contig981:7962..7974Fucus serratus maleUTRF-serratus_M_contig981 7963..7974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932767.2263732-CDS-F-serratus_M_contig981:7974..80461622932767.2263732-CDS-F-serratus_M_contig981:7974..8046Fucus serratus maleCDSF-serratus_M_contig981 7975..8046 +
1690964464.2587883-CDS-F-serratus_M_contig981:7974..80461690964464.2587883-CDS-F-serratus_M_contig981:7974..8046Fucus serratus maleCDSF-serratus_M_contig981 7975..8046 +
1622932767.2424583-CDS-F-serratus_M_contig981:14638..147641622932767.2424583-CDS-F-serratus_M_contig981:14638..14764Fucus serratus maleCDSF-serratus_M_contig981 14639..14764 +
1690964464.26893-CDS-F-serratus_M_contig981:14638..147641690964464.26893-CDS-F-serratus_M_contig981:14638..14764Fucus serratus maleCDSF-serratus_M_contig981 14639..14764 +
1622932767.2622917-CDS-F-serratus_M_contig981:15531..157261622932767.2622917-CDS-F-serratus_M_contig981:15531..15726Fucus serratus maleCDSF-serratus_M_contig981 15532..15726 +
1690964464.2819986-CDS-F-serratus_M_contig981:15531..157261690964464.2819986-CDS-F-serratus_M_contig981:15531..15726Fucus serratus maleCDSF-serratus_M_contig981 15532..15726 +
1622932767.2770145-CDS-F-serratus_M_contig981:16704..167971622932767.2770145-CDS-F-serratus_M_contig981:16704..16797Fucus serratus maleCDSF-serratus_M_contig981 16705..16797 +
1690964464.2924318-CDS-F-serratus_M_contig981:16704..167971690964464.2924318-CDS-F-serratus_M_contig981:16704..16797Fucus serratus maleCDSF-serratus_M_contig981 16705..16797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig981.21119.1

>prot_F-serratus_M_contig981.21119.1 ID=prot_F-serratus_M_contig981.21119.1|Name=mRNA_F-serratus_M_contig981.21119.1|organism=Fucus serratus male|type=polypeptide|length=162bp
MGLKEGDKFPMDSTFQILREGGPSDVPASEIFSGKKVVICGVPGAFTPTC
SDNHLPSFIALYDKFKEKGVDTVACMSVNDAFVMRRWIGSLGASDEVTML
ADGGGVFAEESGLNVKTGKFGGIRLQRLAMIVNDGTIEKLFLEEGTGYTD
KSSGDSVLAAL*
back to top

mRNA from alignment at F-serratus_M_contig981:7963..16797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig981.21119.1 ID=mRNA_F-serratus_M_contig981.21119.1|Name=mRNA_F-serratus_M_contig981.21119.1|organism=Fucus serratus male|type=mRNA|length=8835bp|location=Sequence derived from alignment at F-serratus_M_contig981:7963..16797+ (Fucus serratus male)
AGCAGATTGGCCATGGGTCTCAAGGAGGGTGACAAGTTCCCAATGGACTC
CACGTTCCAGATCCTGAGAGAGGGCGGCCCGTCGGTGAGTTGATCCTCGT
GTACGTATGAATATCGACTGTCTGGGCTTCTGCGGACGAATGGTTCAAGT
GGGCCCAGCTAAAAGCTCCGGATACGATGTCGAGGCGTCTTTACCTTAGA
GCATTAACCAGCCTTCAGTTCCACGGAGGATTGCTGAGGATCTGTAGACT
CACTAGTTTACGCTACAAGTACACACTCACCCACAAAATTCGAAGGACAA
ACTTCTTGTAGGGTACATCAGGTACTTGGGCGCGAAGAATCTGGGCTAGG
CTTCTTTGAAAACAAATGAACTTCTGAATCAACTGACTACTGTACAATCA
GTACGCTGCTTCCTGTCTCTAAATATTTGTGTAGTCATCCCAAACTCGAC
AACTGTTGTACTGTACATGCAATCAGGATGGCAGAGTGAGCTCCATCCAT
GCACCATGCACCATGCACCAGTACGCGTATGATATGAGTAGCGCAAAGCG
TTACTTGTGGTCAGCTGAACAGCGAAAATTAGAGAGAGGGTGTCTGTGTG
GTCACGAGACGCGTTGGGCACGAACCGGATATGGCTGCGAATCCTGCTTG
TGCAGTCTGAATCATGACGCGCCGTACATGATGTACAGTAGTATGTTGTG
CTTCAATGCAGCGATCCCCATACTGGACTCCCACGAATATTAGTAGGTAC
AGACACGAAATATGAATGAGGCGACAGAACACATACGTTGACGAACATAA
ATAAAAACAAGTCTACCGTGCCTTGTAGTTCTTGCTACTTTTGTGTTGTA
CGGTCGCCCCCCGATAGCTCAGAGGTAACCTCGTAACCTTCTGACACGTT
GGGACGTGAGTTCGATCCCGGGCAAGCGGGATTTTCCTCACTAAAAACTA
GTAAACAAAACTAAAATAGAAATACCCAACGAGTGGAGAACGATCAAATC
GTTAGTACACAAAATTCGACTTCACAATCGGCGAGGTAAATGAGTGGCTG
AATCCTTCTAGAGAGAAAAAAATTAAGGCACGCACCGCAGAAGGAAGGTG
GATGAGAAATCCTGTGTGACCCCGGCTGGTACTTCCAACGAACTTGTATG
TCCAGAATGAATGGGAAGAAAACACGCACACACACACACAATACACACAC
ACACTAGTCTGTGTCGGTCTGTTTGTTCTGTACCAGGTGGAAAATTGAAA
AGAAAGCGAAGTAAAGAAGTCCTTGCAGCAATGCCCACTTGAATGCAGTA
TACTGTACAACAAGTACGAGCTACTCTGTAGATGGTAGATAGTAGAGACA
GCAGGTATAGATGCGTTCAGATTTTTCTGTACTACAAACAGTAGTACTGC
TGTTTAAATAGTCATGGTGTTGGCAGAGACTGTACGGAGCAAACAGAGTC
CTTGGTCCCATTCCCTACTTGTATAGAATACAGTATGTACAGTTTAGTAT
GCCGGAGTTTTCACCGTCACGCCTGTGACCTAAAATAATTCCGCCATTTG
TTGATTATATAGATTTATGATGTTACTAGAGGTTTGTATTCAGCAGACAG
ATACAGCCAATCACTACTGTACCCCGGTAGCTCGGAGGTAACCTCGTAAC
CTTCGTACACGTTGGGACGTGAGTTCGAATCCCGGTAAACGGGATTTTTT
CTCACTAAAAAAGAAAAAGAAAAAGATGCCCAACAAGTGGAAACCGATTC
AAATCGTTAGTACACAAAATACGACTCCACGGTCGACGAGGGAAGGGAAC
GGCTGAATCCTTTTCGCGAGAATGCGCCTCAGAAGGAAGGTGGATGAAAA
ATCCGGTGCGACCTTCCTCCTATGTAAACCCGGCTGGTACGTCCAGCGAA
CACGATGTCCAGAATAATTGGGAAGAAAACACACACACACACACATACCA
GACTATACTGTAGAACTGCAGTCTGTATCAGATCTTGTACAGACCTGATA
CAGACAGTACTTCACATACTTTCAACATGCCCACTTCATACCATTAGTGG
GTATGGGAAAGAGAGGCGCATATTAATTGGTCCATGGTGACCTGTTGAGG
TAGCACTCGTTTGGAACTACCTTGAGGTTTACTGGCCCCGTGCCGGTGGG
TTCTCGGCAGCGAACGCCATCGGTACGCCAAGGCGTGACCCGATAAAGTC
GGGGCTGACCCGATGGCGTATGGCGGTTATAGATGAATAAATAGACGCCG
CCGCGGAACTCGGGGAGGAATCCCGTAAGTAAGCACCAGGTTCAGCCTGA
GTATGGAGATGAGCAGGCTGACGCGGGACGGACTGCCGAACCCGTCTCGC
GAGACCAAATTCTCAGGCACGAACGCGGACAGGGAAACATTCATTTTTCT
TTGTTCAGCTGACCACGTGCAGGACTGGCAATCTTACCCGGTTGATCCAT
GCTCTAGCTCTATGTGTGACAACACATAATACCAGGTACATAAGTTCGTC
TACACCAGTCAGAATAAAACACTCGGCCTGAGTAAAGAGAATGAGCAGGC
TGACGCGGGCGGGACGGCCGAACCCGTCTCGCGAGACCAAATTATCACGT
GCGGACGGGGATAGGGGAGTTTCATTTTTCCTGTTCAGCTGCCCACGAGC
AGGATTGGCAAACTTACCCTGCTGGTTCATACTCTGCTATATGTCATGAC
TATACATGCCCACTTCATACCAAGGCGCATATTAATTGGTCCATGGTGAC
CTGCCAAGGCAGCACTTGTTCGGAACTACCTTGAGGTTTATTGGCCCCGC
ACCGGCGGACATTCGGCAGTGAACGCCATCGGTACGCAACTGCGTGATCT
GATAAACTCGGGACTGACCCGATGGCGTATGGCGGGGTTTAGATGGATAA
ATGGACGCCGCCGCCGAACTCGGGAGGAATCCCGTAAGTATGCACCAGAA
TCAGCCTGAGTATTGAGATGAGCAGGCTGACGCGGGACGGGACTGCCAAA
CCCGTCTCGCGAGGCCAAACTCTTAGGCACGAACGTGGACAGGGAAATAT
TCATTTTTCCTGTTCAGCTGACCACGTGCAGGACTGGCAACCTTACCCGG
TTGATCCGTAATCTTGCTATATGTGTGTGACCATACATAGGTCTATACCT
ACTTGTAAGAATAGGACACCAGCGCTCTGAAAGTATGGTACAGTACATTT
AATGTCATGGCATTCAGCAAGAGTATGCGACAGCCAGTTGCCCAGGTAGT
TCATTTGGTAACCTCGTAACCTCCTGACACGTTGGGACGTGAGTTCGAAC
CCCGGTAAGAGATTTTTCCTCACTAAAGAATAAAGATGTCCAGCAAGTGG
AGAACGATTGAATCGTTAGAACACAAAATTCGACTTCACGGTCGACGAGG
GAAAGAAACGGCTGAATCCTTCTCGCGAGAAAAATGAAGACATTGACCGC
AGAAGGAAGGTGGACGAGAAATCTTGTGTGACCTTCCTCCTGTGTGACCC
CGGCTGGTATATCCAACAAACTTGACGTCCAAAATAAATGGGAAGAAACA
CACACACACACACGTCAACACACACACACACTAATAAGTATCATTGATCC
CCCCTCGGGAGGATCAATGCGAGTGGCATTAAAGGACTAGGATGACAGGG
CCGGATTGCGCGGTCATGTGCAATTTAATAAAAAAACACACACACACATT
AGGAGGACAGGACCGGATCGCGCGGTTATGTGCAATTTAATATATAAACA
CACACACACATACACATGGATCAACCGGGTAAGGTTGCCAATCCCGCTCG
TAGTCAGTTGAACAGGGAAAATTGTTATTTCCCTGTCCGCGTTGGCGCCT
GAGAGTTTGGTCTCCCGAGACGGGTTCGGCAGTCCCGTCCCGCGCCAGCC
TGCTCATTCTCAACACTGAAGACAGGCTGAATCTGGTGTTTACTTACGGG
ATTTCTCCCGAATTCCTCGGCGGCGTCCATTTATTTAATGCATTTAGTAC
AGTATCAAATAATGTAATGTTCGTCGCTGGCGTGCCTCGAACTCGAGTTG
ACTGTACGTTTTCTACATGTTGTTGATGCACAGTAGTCACAGTATTAATA
GTCGAGCATTGGCAACTGCTATACAGTTGGGCAGAAGCCCCCAACCTGCC
GCCATAAGGCAATACAAAATGCAATACAATATACCAGGTACCGGCACTTT
GTAGAGGGCATTTTAAAACGAAAAAATCGCTGTTGTGTTTATTTACGCAA
TCCAAACCGTTCACAGTACGGCAAAATTACACCGATACATATCCTCGGGA
ATTGCCATTGACTACCGATGGGGGTTGATGATATAGATGACACCCTGGCG
GAAAGCGGGGGAATCCGTGAGTAAGCACCAGAGTCAGCCTGGGTGTGGAG
AATGAGCAGAGGCTGACGCGGGACGGGACGACGGAGCCTGTCTCGGCAAT
TTCTCAGGCGCGAACAGGGACAAGGAAAAATCAGTTTCCCCGTTCAGCTA
TAGGTAGCTGACTACGAGGGCAGGACTGGCAACCATGCCCGGTGGTTGAT
CCATGAAGTAACAACCATACCAGGTACATATGCATGTATGTATACATACC
TGGTATGTATGTATGTATGGTCATCCTATATAGCAAGAGTAAGGGTCAAC
CGGGTAAGGTTGTTGCCAATCCTACTCGTGGTCAGCTGAACAGGGAAAAT
TAATACTTCCCTGTCCCCGTTCGCGCTTGAGAATTTGGTCTCGCGAGACG
GGTTCGGCACTTGTTGTTGTTGTTGATTTACACATTCAGCGTACTATCCT
TGCTACTAAAGAAACTACGGTGACTCGACAAGCCAGCCATAGACTTATCA
AATGTCAATCGCGCTCGTGGTCACAAGAGGTATACAGGTCAACGGGTCAC
ATCATGGCGACAGCCCGCTACTCAAACCAACATGGATCAAAATCGTGACA
AAATCCTTGCCAGATCCAACCAACCCAGAACTTGGGAAACTTATCGGCGT
CAAGACGATGTCTTTGGGTACGAACTACAGTTTCTACTGTCTGGGGTACT
GCTCTAACTACAGTTTCTACTGTCTGGGGTGCTGCTCTAACTACAGTTTC
TACTGTCTGGAGTGCTGCTCTAACTACAGTTTCTACTGTCTGGGGTGCTG
CTCTAACTACAGTTTCTACTGTCTGGGGTGCTGCTCTAACTACAGTTTCT
ACTGTCTGGGGTACTGCTCTAACTACAGTTTCTACTGTCTGGAGTGCTGC
TCTAACAGTAACAGTATTATTCCAGAATCTGAATTACAAGCTACAGAGAA
TGTCTGATGTGCTACCCAACGCCCAACCAACAAAATCGTCAAAATTGATA
CAAGAAGCTTTGTACAGTAGCTCTTATTAATAGTATAATAGTATAGGAAG
GGTACGCGAAGACAAGTCATGTGACATTTTGCAGGCAATGGATGGCACCG
ACCAATGTTGAAACGGTTCATCAAAGATCTGTTTTTCATATCAAGAGCAA
CCCCGATTGACTCGGATTGTTGCCGCCTTCCCACGACCAGCGTTCTCAGC
AGCAAAGCGGAAAAATCACGCTCCGATCAGTTTTGATACACAAACCTAAG
TTTCTTAAGGTCACCCATTGTAGCAGAGTGAGGGAAAATTAAAATACCGA
ATTCCATGGTGACCCAGGGCTTGAGCTGGTGAAGCCGGCGCGCGAGCCAT
CATCCAGCCGTGCAAAGCCCCGTGCATCCCTGAAAACCCCCAGAAATCTT
GCCCGTACACCGCTCCTTATCGGCCCTCGTAGGATGAAAACAGTCCGTGG
TCAGAAATCAGTTTTCTCTCAGCAAGCTCCCGGTTCGCGCCTTTGATTCT
GGCGCACAGACGTTCAGCATTTCCCTGGCTTGTCGACGATCGAGCTGCCC
TCTGCCCTCGCCGAGTCTCTTGCGTGCCTACCTCTCGCGTGCAGCCACCT
CCCGAAGGGCACCAAATTTGAGCTCGGAAGAGGCGCGCACCTGGAAACAC
CACCCTCAATAAACCATTCCGCCGCCGCATCGCGAAGACAGCCAAATGGC
TGCATCGCTCGAGGGTGATCCCGACCCTACACCCGCCGGAAAGACCCTCC
CACACTCATACCCGGAAACCAGGTTATCATGTTATCATGTCGGAGGGAGG
GAGAGGACACGAGATGGAGCAGTCCCGTCCCGCGTCAGCCTGCTCATGTC
CGCACTCAGGTTGAATCTGATGCTTACTTACGGAATTCCTCCCGAGTTCC
GCGGCGGCGTCCATTTATTTCTTTAAAATATATAGATACAAATATATTTC
AACATGCCCACTTCATGCCAATAATAGGTTTGGCAAAATAGTACTGTACC
TGGTACCAACTACGAAGTGTGCGATTGATGGCTGTGTCCGGAACTTTCTT
TCTTTTGAGAGCGTATGATATGGCGTTTTTTACCTAGCTCTGTACCCACA
GTACAGTACATAATAGTCTAATACCCTATTAATAATGCTTTTTGCGTACT
CGGAAGTACTCGGAAGTCGACTTTTCACCATGCTTGGTCGCTTGAGTTTT
AATTGGTGAAAACTACGGGGTTGTAGATGCACTTATGTATTAATGCTATT
TAATACTCTTGTGCTCAACCGTCGACTGTCGCCTTGGCAACCCGCCCTCG
AATGCCGTGTGTGTGACGTGTTGCAGGATGTGCCGGCGAGCGAGATCTTC
TCGGGCAAGAAGGTGGTCATCTGCGGCGTGCCCGGTGCCTTCACCCCGAC
CTGCAGCGACAACCACCTCCCTTCCTTCATTGCCCTCTACGACAAGTTCA
AGGTGACCCTGGATAAATAGATTTGGTTTTTAATCGATTTGATATTTATT
ACAGAAAAAGTCACGTGCCCCGTAACTCTCAAGCTATTAAAAACTAAACA
AGTATAAGGGGATTTGGCTGCTTTATAAACGGATGGGTCACAATCTTGAC
GTGATGACATGACTGGGATGGCAGGTTCTGTGCAGTGCAATCTATATACA
CACAAACAAACACACACACCCTCGGGAGGATCAATGCGAGTGGTATAGAA
TAGCTAGGATGACAGGGCCGGATTGCGCAGTTATGTGCAATTTAATAAAT
ACACACACACACATACCCCCCGTGGAAAGATCAATGCGAGTGGCATAGAA
TGACTGGGATGACAGGGCCGGATTGCGCGGTTATGTCCAATTCGATAAAT
ATAGACACACACACATACATACACACACACACTTTGAGCCGTACAGTTAG
CGGATACGACTTGACATGAGAGAAAGCGGGCCAATCAAAAAAAATCTGCA
TTTTATAGGCCATTTGTTCGACGTTATTTCCGGTAACAATCTTCATTTTA
ATAATATATATATATATATATATATATTACAGTGAAATGGTTTATAAATA
GAAAGACGAGTTCGTCCGCAGCAAATTGATGCGATAAATAATAAAAATAA
AGGGACCACGGCGACCCTTGGGCGCACCACACTCACCACTCCGCTCTGCT
GCCCGGCACCGGTGAACACTGCTTGTTGAAATTAAAAACCAAACTTTTGA
CACGATTTGCTTGAAACAGGAGAAGGGCGTGGACACGGTGGCGTGCATGT
CGGTGAACGATGCCTTCGTGATGAGGCGCTGGATCGGGTCCCTCGGCGCC
TCCGACGAGGTGACCATGCTCGCCGACGGAGGAGGAGTCTTCGCCGAGGA
GAGCGGCCTCAACGTCAAGACGGGAAAGTTCGGAGGGATCCGTCTTCAGC
GTCTGGCGATGATCGTGAGAACTGTCGTTGTTGGTTGTGAGAGTGTCGTT
GCGAAAAAGTCTTGAATTGGTGTCTAGCTCTATGCCAGCAGTTGGATTTT
CTTGGCTCAACATGTCTTACGAGGTACGTGGTACCATCATCACTGTGCCC
GTATTTTGCTCCGCTGTACGAGAGGCTTGGGGTTTTAATTCTAACGAGGA
GAGGTGATGCCGTGGACGTGTAGATGGAGTCTGTTCTCGAGTTTGTGCAT
GATCTATTTACACAAGTTTGTTTGTTTGTTTGTAATGTATCTCACTTACA
GTATAGTCGATGATCAAGGGCCTCTACGTGCTAAGTTAGTTACCAATCAC
ACCTACTGCAGCAACGTTGTCATCCTGTCTGTGTTCACGAAGGATCTTCC
CATCTTTCCCCGGTTCTCGCTGTACGATTTTTTATCGCTGTTAACCAATT
GCTGAATTATACTTAATCCCGTTCTCATGCTTTTCGCTTGAGAAGCCAGC
ATACAAATTTTGGTTTTAGCAAAAATTCTAACTCACGACTTCGGCACTAC
TAGGTGTACATGGTTATCGACTAAGCCACTCGAGCTAGGGCAATAAGTCG
AAAAGCTTCCGCGAAACACATATATATATATCCCCCGGGCACCGTACTAC
TAATGCACCAGGGAGTTCCATTTGCCTCCAGGAGGCGTGAGTCTCGACCT
TTTTGCGCCAATGGAAAGAGATGAAACCCTCTTACTTGAAAGCGCTCATG
CTTCTCATCTTAGCACAGTAGTCGAGCGCAAACCCGCCATTTCGGCTGGT
GCCGTGGTTTGGCTTGTAAGTATTTGGCTAGTGAAGTAGCTTTTGTGGTG
CCGTCGTATATTCAAGACTCAGTAACTGTCTGTAGGTAGGCATCCATGGC
GGAAGTACCAACACCTGGACCCAACCCAACCCATCACTTTGAAACGCTTT
GGTCGCTCGTCCGCCCGCCCTGACTGCGCTTTTTGGATGAAGGTGAACGA
TGGGACCATTGAGAAGCTTTTCTTGGAGGAGGGCACCGGCTACACGGACA
AGTCTTCCGGCGACTCTGTGCTCGCCGCGCTCTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig981:7963..16797+

>mRNA_F-serratus_M_contig981.21119.1 ID=mRNA_F-serratus_M_contig981.21119.1|Name=mRNA_F-serratus_M_contig981.21119.1|organism=Fucus serratus male|type=CDS|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig981:7963..16797+ (Fucus serratus male)
ATGGGTCTCAAGGAGGGTGACAAGTTCCCAATGGACTCCACGTTCCAGAT
CCTGAGAGAGGGCGGCCCGTCGATGGGTCTCAAGGAGGGTGACAAGTTCC
CAATGGACTCCACGTTCCAGATCCTGAGAGAGGGCGGCCCGTCGGATGTG
CCGGCGAGCGAGATCTTCTCGGGCAAGAAGGTGGTCATCTGCGGCGTGCC
CGGTGCCTTCACCCCGACCTGCAGCGACAACCACCTCCCTTCCTTCATTG
CCCTCTACGACAAGTTCAAGGATGTGCCGGCGAGCGAGATCTTCTCGGGC
AAGAAGGTGGTCATCTGCGGCGTGCCCGGTGCCTTCACCCCGACCTGCAG
CGACAACCACCTCCCTTCCTTCATTGCCCTCTACGACAAGTTCAAGGAGA
AGGGCGTGGACACGGTGGCGTGCATGTCGGTGAACGATGCCTTCGTGATG
AGGCGCTGGATCGGGTCCCTCGGCGCCTCCGACGAGGTGACCATGCTCGC
CGACGGAGGAGGAGTCTTCGCCGAGGAGAGCGGCCTCAACGTCAAGACGG
GAAAGTTCGGAGGGATCCGTCTTCAGCGTCTGGCGATGATCGAGAAGGGC
GTGGACACGGTGGCGTGCATGTCGGTGAACGATGCCTTCGTGATGAGGCG
CTGGATCGGGTCCCTCGGCGCCTCCGACGAGGTGACCATGCTCGCCGACG
GAGGAGGAGTCTTCGCCGAGGAGAGCGGCCTCAACGTCAAGACGGGAAAG
TTCGGAGGGATCCGTCTTCAGCGTCTGGCGATGATCGTGAACGATGGGAC
CATTGAGAAGCTTTTCTTGGAGGAGGGCACCGGCTACACGGACAAGTCTT
CCGGCGACTCTGTGCTCGCCGCGCTCTGAGTGAACGATGGGACCATTGAG
AAGCTTTTCTTGGAGGAGGGCACCGGCTACACGGACAAGTCTTCCGGCGA
CTCTGTGCTCGCCGCGCTCTGA
back to top