mRNA_F-serratus_M_contig98.21097.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig98.21097.1
Unique NamemRNA_F-serratus_M_contig98.21097.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig98.21097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig98contigF-serratus_M_contig98:451550..452176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size152
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932760.6991568-CDS-F-serratus_M_contig98:451549..4515911622932760.6991568-CDS-F-serratus_M_contig98:451549..451591Fucus serratus maleCDSF-serratus_M_contig98 451550..451591 +
1690964460.845198-CDS-F-serratus_M_contig98:451549..4515911690964460.845198-CDS-F-serratus_M_contig98:451549..451591Fucus serratus maleCDSF-serratus_M_contig98 451550..451591 +
1622932760.7168868-CDS-F-serratus_M_contig98:452067..4521751622932760.7168868-CDS-F-serratus_M_contig98:452067..452175Fucus serratus maleCDSF-serratus_M_contig98 452068..452175 +
1690964460.85618-CDS-F-serratus_M_contig98:452067..4521751690964460.85618-CDS-F-serratus_M_contig98:452067..452175Fucus serratus maleCDSF-serratus_M_contig98 452068..452175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig98.21097.1prot_F-serratus_M_contig98.21097.1Fucus serratus malepolypeptideF-serratus_M_contig98 451550..452175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig98.21097.1

>prot_F-serratus_M_contig98.21097.1 ID=prot_F-serratus_M_contig98.21097.1|Name=mRNA_F-serratus_M_contig98.21097.1|organism=Fucus serratus male|type=polypeptide|length=50bp
GGRSAAGSPGSAPQAIQSPDHVRQKFVKSLQRKVDAAITDKSRFPFTDFM
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mRNA from alignment at F-serratus_M_contig98:451550..452176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig98.21097.1 ID=mRNA_F-serratus_M_contig98.21097.1|Name=mRNA_F-serratus_M_contig98.21097.1|organism=Fucus serratus male|type=mRNA|length=627bp|location=Sequence derived from alignment at F-serratus_M_contig98:451550..452176+ (Fucus serratus male)
GGCGGCCGGAGTGCAGCTGGATCACCAGGCAGTGCACCGCAGGTGCTTGT
TTTTTGTTTCATTGTTGTCATGGGACTTTGACTATTGCTTTGCCGTGAGA
TATCGGGATACGTACACACAGCGTGTCGGCAAATGGCTTTTACCCTGTGG
TGTAATGGTAACCTTATCACATACCACTTGTACAATGTACTACTATATGA
TTGTATCTTTATACGAACAAGTTGTACTGGTAGTTGAATTTACCCTGTGG
TGTATTATTAATAGTAACCTTATCACATACTCCGTACTTGTTCAACCTAA
ATGATTGTATGTATAGTCACACATATAGCAAGGGTATGGATCAACCTGGT
AAGGCTGCCAATTCTGCTCGTGGTCAGCTGAACAGCAAAAATAATATTTC
TCTGTCCGCGTTCGTGCCTGAAAATTTGGTATCGCGAGACGGTTGTTTCT
TTACACGAACAAGTTGTACTAGTATGTACTGTACTGGTATTGTTCTTGTG
TTTATCCGTATGGTCCAGGCTATACAGTCGCCTGATCATGTGCGGCAGAA
ATTCGTCAAGAGTCTGCAACGCAAGGTCGATGCCGCCATCACTGACAAGA
GCCGGTTTCCGTTCACCGACTTCATGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig98:451550..452176+

>mRNA_F-serratus_M_contig98.21097.1 ID=mRNA_F-serratus_M_contig98.21097.1|Name=mRNA_F-serratus_M_contig98.21097.1|organism=Fucus serratus male|type=CDS|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig98:451550..452176+ (Fucus serratus male)
GGCGGCCGGAGTGCAGCTGGATCACCAGGCAGTGCACCGCAGGGCGGCCG
GAGTGCAGCTGGATCACCAGGCAGTGCACCGCAGGCTATACAGTCGCCTG
ATCATGTGCGGCAGAAATTCGTCAAGAGTCTGCAACGCAAGGTCGATGCC
GCCATCACTGACAAGAGCCGGTTTCCGTTCACCGACTTCATGGCTATACA
GTCGCCTGATCATGTGCGGCAGAAATTCGTCAAGAGTCTGCAACGCAAGG
TCGATGCCGCCATCACTGACAAGAGCCGGTTTCCGTTCACCGACTTCATG
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