mRNA_F-serratus_M_contig98.21094.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig98.21094.1 vs. uniprot
Match: UPI001686E2C2 (NFACT family protein n=4 Tax=Nostoc TaxID=1177 RepID=UPI001686E2C2) HSP 1 Score: 264 bits (674), Expect = 4.100e-74 Identity = 213/687 (31.00%), Postives = 307/687 (44.69%), Query Frame = 3
Query: 282 DVVTMESRGSRHRELQRTIVPSRMETVYQLGPHDVAVSLRTLSGNIWLRISWNPKGARCHVGAPPPREKEQKAYTFSQTLRALLRGLNIVAVGLARPFERVIYLDFASRLDTPPTFRLYVEIMASRSNVILAAKEEGVQETVAACAYQVSPTKS-VRPLSTGQLYELPQLRPTGTRSRDGLEESLEDFAERVGRVPTQQLKKALVSVYQGTSPMLVTVM--ASRVPGLTPVMKVGDIAPEQWELLHSGPWKRWLQLVGDGSATSVAHNDGAAGSDSSADARAMATPWIAEDGSSYYPTTLAEKCCSIGGGEVGGGSAGLGRGDGSENGPAMSLQAMLETYYGATRSSAEFDNLKRRCTARVTATLAKLRERVKDFEGQLAAAQEDKVSELNRRGDLLVTFAHVWRDGDPCVECEDFETGERISIELKSDKTPVETAQEAYKLGKKLKRSATFVRDLLDQTKAQVLYAEGIEVALEQLLGGNETGSQSSSSREELSVLRGIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVGAGTGKRESQTAGLLQLRRVAGSPPVLVGRNNLQNERITFSVGQAHELWFHARGVAGAHVLLRLDPGRDPEDDDLAFAADVAVYFSKARQSASTAVDFISPKAVKKLGSAGPGMVKYEGAKVVRGMP 2333
D+ T+ + S EL+ +PSR+E VYQ H +AV+LRTL WL ISW+P+ AR +G PPPR + +TFSQ L L GL +VA+ P+ER I L FA R + LYVEIM SNVIL + A+QVS +S VRP+ TGQ YE+P P T L ES + ERV VP +K+ L+ Y G S LV M A+ +P T K + E W L W+ WLQ + G + P A +G G + PA Q++L YY + F L+ + + ++ LAKL+ + + F +L Q D+ + ++ DLL+ W+ G + DFET E ++I L+ DK V+ AQ YK +KLKR+ + V LL K+++ Y E +E A+ Q+ +S + E+L L I + D ES + R + +L+GRNN QN+ +TF V ++LWFHA+ + G+H+L+RL+PG PE DL FAA++A Y+S+ARQS V + PK V K A PG+ Y+ +++ G P
Sbjct: 5 DLTTLTATCS---ELRAYWLPSRLEQVYQRDRHTIAVALRTLKQRGWLEISWHPQAARICIGDPPPRLPD--TFTFSQQLVHQLSGLALVAIEAIAPWERAIDLQFARRPGENALYHLYVEIMGKYSNVILT----DANNFIITAAHQVSEQQSSVRPIQTGQPYEIP---PKLTGPVPSLSESQIRWQERVSLVPGA-IKRQLIQSYSGLSAALVNSMLLAANIPAETTTDK---LTAEDWNKLFQH-WQEWLQALDLGK---------------------------------FQPAWTATGYTVMGWGAIA---------------PAKDTQSLLNKYYTDQLNQQVFTQLRHQLSQKLNNILAKLQIKAQTFTERLQ--QSDQADDYRQKADLLMANLQNWQPGMKEITLPDFETDEPVAIALQPDKNAVQNAQSLYKQHQKLKRARSAVEPLLLDVKSEIEYLEQVEAAIAQI--------ESYQTAEDLQALEEIRDELIGQKYLE----------------------------------------------DPEYRNRSTEESANTNFHRYR-TPNNFEILIGRNNRQNDYLTFRVAGDYDLWFHAQEIPGSHLLMRLEPGAVPEASDLEFAANLAAYYSRARQSDQVPVVYTQPKYVYKPKGAKPGIAIYKQERILWGKP 569
BLAST of mRNA_F-serratus_M_contig98.21094.1 vs. uniprot
Match: K8GJA5_9CYAN (Rqc2 homolog RqcH n=1 Tax=Leptolyngbyaceae cyanobacterium JSC-12 TaxID=864702 RepID=K8GJA5_9CYAN) HSP 1 Score: 264 bits (674), Expect = 6.010e-74 Identity = 197/672 (29.32%), Postives = 304/672 (45.24%), Query Frame = 3
Query: 321 ELQRTIVPSRMETVYQLGPHDVAVSLRTLSGNIWLRISWNPKGARCHVGAPPPREKEQKAYTFSQTLRALLRGLNIVAVGLARPFERVIYLDFASRLDTPPTFRLYVEIMASRSNVILAAKEEGVQETVAACAYQVSPTKS-VRPLSTGQLYELPQLRPTGTRSRDGLEESLEDFAERVGRVPTQQLKKALVSVYQGTSPMLVTVMASRVPGLTPVMKVGDIAPEQWELLHSGPWKRWLQLVGDGSATSVAHNDGAAGSDSSADARAMATPWIAEDGSSYYPTTLAEKCCSIGGGEVGGGSAGLGRGDGSENGPAMSLQAMLETYYGATRSSAEFDNLKRRCTARVTATLAKLRERVKDFEGQLAAAQEDKVSELNRRGDLLVTFAHVWRDGDPCVECEDFETGERISIELKSDKTPVETAQEAYKLGKKLKRSATFVRDLLDQTKAQVLYAEGIEVALEQLLGGNETGSQSSSSREELSVLRGIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVGAGTGKRESQTAGLLQLRRVAGSPPVLVGRNNLQNERITFSVGQAHELWFHARGVAGAHVLLRLDPGRDPEDDDLAFAADVAVYFSKARQSASTAVDFISPKAVKKLGSAGPGMVKYEGAKVVRGMP 2333
+L+ T +P+R+E VYQ + + + LRT WL +SW+P+ AR + PPPR + +TFSQ LR + L +VA+ P+ERV+ L FA R PP + LYVEIM SNVILA ++ + A+QVS +S VRP+ TGQ YE+P P + ES E + ERV VP LKK L+ Y+G S +V + L P ++ E W L W++WLQ++ D ++P ++ +G G P+ ++ +++ YY + EF L + +++ L KLR + +DF ++A Q D+ + ++ DLL+ H W+ G + DF TG I+I L +K V+ AQ YK +KLKR+ + + LL+ ++ Y E +E +L +L + ++E+L L+ I + RE + + + AG VLVGRNN QN+++TF ++LWFH + + G+HVLLRL+PG P+ DL + A+VA + S+ RQS V + PK V K A PGM+ Y+ +V+ G P
Sbjct: 15 DLRATWLPARLEQVYQRDRYTLFLGLRTFDQRGWLLVSWHPQAARLCISDPPPRHPD--TFTFSQQLRHQIGNLALVAIAAIAPWERVLDLQFARRPGDPPLWHLYVEIMGKYSNVILANQDN----QIITAAHQVSVQQSSVRPIQTGQSYEVP---PISSDPSPSFHESFERWQERVSLVPGV-LKKRLLKTYRGLSSAIVQSLIQAAQ-LDPNQSTESLSLEDWRSLFQ-QWQQWLQIL---------------------------------DKEDFHPGWVSTGYTVLGWGATT---------------PSENVHDLIDRYYRDQLNVQEFTQLHHHLSQKLSNLLTKLRLKAQDFYARMA--QSDQADQYRQQADLLMAHLHKWQPGMSSISLADFATGNPITIPLNPEKNAVQNAQALYKRHQKLKRARSAIAPLLEDVINEIHYLEQVEASLAEL--------KQYETQEDLDALQEIRDELVQQQYLEKPEYSSVSL---------------------------------------------NREDGASQPYRYKTPAGFE-VLVGRNNRQNDQLTFRTAGDYDLWFHTQEIPGSHVLLRLEPGSIPDTPDLEYVANVAAFHSRGRQSEQVPVVYTKPKNVYKPKGAKPGMIIYKHEQVIWGKP 570
BLAST of mRNA_F-serratus_M_contig98.21094.1 vs. uniprot
Match: K9TWZ5_CHRTP (Rqc2 homolog RqcH n=5 Tax=Chroococcidiopsis TaxID=54298 RepID=K9TWZ5_CHRTP) HSP 1 Score: 262 bits (670), Expect = 1.690e-73 Identity = 201/684 (29.39%), Postives = 298/684 (43.57%), Query Frame = 3
Query: 321 ELQRTIVPSRMETVYQLGPHDVAVSLRTLSGNIWLRISWNPKGARCHVGAPPPREKEQKAYTFSQTLRALLRGLNIVAVGLARPFERVIYLDFASRLDTPPTFRLYVEIMASRSNVILAAKEEGVQETVAACAYQVSPTKS-VRPLSTGQLYELPQLRPTGTRSRDGLEESLEDFAERVGRVPTQQLKKALVSVYQGTSPMLVTVMASRVPGLTPVMKVGDIAPEQWELLHSGPWKRWLQLVGDGSATSVAHNDGAAGSDSSADARAMATPWIAEDGSSYYPTTLAEKCCSIGGGEVGGGSAGLGRGDGSENGPAMSLQAMLETYYGATRSSAEFDNLKRRCTARVTATLAKLRERVKDFEGQLAAAQEDKVSELNRRGDLLVTFAHVWRDGDPCVECEDFETGERISIELKSDKTPVETAQEAYKLGKKLKRSATFVRDLLDQTKAQVLYAEGIEVALEQLLGGNETGSQSSSSREELSVLRGIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVGAGTGKRESQTAGLLQLRRVAGSP--PVLVGRNNLQNERITFSVGQAHELWFHARGVAGAHVLLRLDPGRDPEDDDLAFAADVAVYFSKARQSASTAVDFISPKAVKKLGSAGPGMVKYEGAKVVRGMPGRVEALVAEA 2363
EL + +P+R+E VYQ + + ++LRTL WL ISW+P+ A +G PPPR+ + +TFSQ L L GL +++ P+ERV+ L FA R P + +YVEIM SNV+L + A+QVSP KS VRP+ TGQ YELP P T + L+E + ERV VP+ LK+ L+ Y+G SP L+ +A + L P + E W+ L W+ WLQ + A A +P G + + P S+Q +L YY + EF L+ + + ++ + LA D+ ++ DLL+ W G + DFETGE I+I L +K ++ AQ YK KLKR+ V LL + + + Y E +E A+ Q+ S E+L L+ I E G+R + + R + +LVGRNN QN+++TF V ++LWFHA+ + G+HVL+R+ PG +PE+ DL FAAD A Y+S+ARQS V + PK V K A PG+ Y+ +V+ G P + E + ++
Sbjct: 15 ELSKDWIPARLEQVYQRDRYTILLALRTLDRRGWLEISWHPQAAHICIGTPPPRQPD--TFTFSQQLLHQLNGLALISCRPVVPWERVVDLQFARRPGEPVLWHVYVEIMGKYSNVVLT----NTANEITTAAHQVSPQKSSVRPIQTGQSYELP---PALTGTAPALDEPFSRWQERVSLVPSA-LKRCLLKSYRGISPTLIEAIA-QAADLDPEQSTDSLTAEDWQQLFHY-WQAWLQTL----------------------ATAQFSPGWTATGYTVLKWNAIQ--------------------------PVASVQELLNQYYTNQLNRQEFSQLQYQLSQKIQSLLAXXX--XXXXXXXXXXXXSDRADSYRQQADLLMAHLQEWLPGMKSITLADFETGEPIAIALNPEKNAIQNAQGLYKQAGKLKRARGAVEPLLAEVEQERDYLEQVEAAVAQV--------DKYQSTEDLEALKEIREELIQQKYLKAPDY-------------------------------------------------GRRNANEDSSVNFHRYSTPSGFELLVGRNNRQNDQLTFRVAGDYDLWFHAQEIPGSHVLMRVTPGAEPEEVDLQFAADFAAYYSRARQSDRVPVIYTEPKYVYKPKGAKPGIAIYKQEQVIWGQPLQAEQYLQQS 579
BLAST of mRNA_F-serratus_M_contig98.21094.1 vs. uniprot
Match: A0A3M9YYZ8_9CYAN (Rqc2 homolog RqcH n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9YYZ8_9CYAN) HSP 1 Score: 261 bits (668), Expect = 3.740e-73 Identity = 210/676 (31.07%), Postives = 310/676 (45.86%), Query Frame = 3
Query: 321 ELQRTIVPSRMETVYQLGPHDVAVSLRTLSGNIWLRISWNPKGARCHVGAPPPREKEQKAYTFSQTLRALLRGLNIVAVGLARPFERVIYLDFASRLDTPPTFRLYVEIMASRSNVILAAKEEGVQETVAACAYQVSPTKS-VRPLSTGQLYELPQLRPTGTRSRDGLEESLEDFAERVGRVPTQQLKKALVSVYQGTSPMLVTVMASRVPGLTPVMKVGDIAPEQWELLHSGPWKRWLQLVGDGSATSVAHNDGAAGSDSSADARAMATPWIAEDGSSYYPTTLAEKCCSIGGGEVGGGSAGLGRGDGSENGPAMSLQAMLETYYGATRSSAEFDNLKRRCTARVTATLAKLRERVKDFEGQLAAAQEDKVSELNRRGDLLVTFAHVWRDGDPCVECEDFETGERISIELKSDKTPVETAQEAYKLGKKLKRSATFVRDLLDQTKAQVLYAEGIEVALEQLLGGNETGSQSS--SSREELSVLRGIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVGAGTGKRESQTAGLLQLRRVAGSPPVLVGRNNLQNERITFSVGQAHELWFHARGVAGAHVLLRLDPGRDPEDDDLAFAADVAVYFSKARQSASTAVDFISPKAVKKLGSAGPGMVKYEGAKVVRGMPGR 2339
EL+ +P+R+E VYQ + +A++LRTL WL +SW+P+ AR +G PPPR + +TFSQ LR L GL +VA+ P+ERV+ L FA R + LY+EIM + SNVILA ++ + AYQVS +S +RP+ TGQ YE+P P T + LEE + ER+ +P LK+ L+ Y+G S LV M + GL P + E W+ L W WL + + W+ G Y + ++ R D P S+ +L YY + EF L+ + T +++ L KL + DF+ +L Q D+ + + DLL+ + H W+ G + DF TG+ I I L+ +K V+ AQ YK +KLKRS + LL + +A+ Y E ++VA+ QL +S R+EL + +G E E+Q L+ R +G VL+GRNN QN+ +TF + ++LWFH + + G+HVLLRL+PG E+ DL F AD+A Y+S+ARQS V + PK V K A PG+ Y+ +V+ G P R
Sbjct: 15 ELRTDWLPARLEQVYQRDRYTIALALRTLDQRGWLTLSWHPQAARLCIGDPPPRTPD--TFTFSQQLRHQLNGLALVAIVPIAPWERVVDLQFAQRPGEAALWHLYMEIMGNYSNVILANQDN----QIVTAAYQVSSQQSSLRPIQTGQPYEMP---PILTNAVPSLEEPQSRWQERLSLIPGP-LKRNLLKNYRGLSSALVNSMV-QAAGLGPDQLTESLKAEDWQRLFQR-WHEWLHAL---------------------EREQFQPGWL---GQGYTVMSWSDWQTP--------------RPDWK---PEKSIHPILNRYYTDQLNRQEFGQLRHQITQKLSHHLKKLATKAADFQSRLQ--QSDRADQYREQADLLMAYLHEWQPGMTEITLADFVTGDPIRIPLEPEKNAVQNAQALYKRHQKLKRSRAAIEPLLIEVQAERDYLEQVDVAIAQLDEYRTPADLASLIEIRDEL-IQQGYLEDPDQRYRN-----------------------------------------------------NSNPETQ---YLRYRSPSGYE-VLIGRNNRQNDLLTFRLASDYDLWFHTQEIPGSHVLLRLEPGAAAEEVDLQFTADLAAYYSRARQSDQAPVIYTEPKQVFKPKGAKPGIAIYKQERVIWGEPQR 577
BLAST of mRNA_F-serratus_M_contig98.21094.1 vs. uniprot
Match: H1WH19_9CYAN (Rqc2 homolog RqcH n=3 Tax=Oscillatoriales TaxID=1150 RepID=H1WH19_9CYAN) HSP 1 Score: 261 bits (666), Expect = 6.050e-73 Identity = 207/680 (30.44%), Postives = 307/680 (45.15%), Query Frame = 3
Query: 321 ELQRTIVPSRMETVYQLGPHDVAVSLRTLSGNIWLRISWNPKGARCHVGAPPPREKEQKAYTFSQTLRALLRGLNIVAVGLARPFERVIYLDFASRLDTPPTFRLYVEIMASRSNVILAAKEEGVQETVAACAYQVSPTKS-VRPLSTGQLYELPQLRPTGTRSRDGLEESLEDFAERVGRVPTQQLKKALVSVYQGTSPML-VTVMASRVPGLTPVMKVGDIAPEQWELLHSGPWKRWLQLVGDGSATSVAHNDGAAGSDSSADARAMATPWIAEDGSSYYPTTLAEKCCSIGGGEVGGGSAGLGRGDGSENGPAMSLQAMLETYYGATRSSAEFDNLKRRCTARVTATLAKLRERVKDFEGQLAAAQEDKVSELNRRGDLLVTFAHVWRDGDPCVECEDFETGERISIELKSDKTPVETAQEAYKLGKKLKRSATFVRDLLDQTKAQVLYAEGIEVALEQLLGGNETGSQSSSSREELSVLRGIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVGAGTGKRESQTAGLLQLRRVAGSPPVLVGRNNLQNERITFSVGQAHELWFHARGVAGAHVLLRLDPGRDPEDDDLAFAADVAVYFSKARQSASTAVDFISPKAVKKLGSAGPGMVKYEGAKVVRGMPGRVEALV 2354
EL+ +P+R+E VYQ ++++LRTL G WL ISW+P+ AR + PPPR + +TFS LR L GL +V + P+ERV+ L FA R + LYVEIM SNVIL K+ + A+QVS +S VRP+ TG YELP P T LEE LE + ERV +P LK+ L+ Y+G S L V +MA+ L ++ E+WE L W++WL + G + P A +G G++G PA ++Q +L YY + EF L+ + + ++ L KL ++ +F +L Q +K + DLL+ H W+ G + DFET + I L+ +K V+ AQ YK +K+KR+ + L++ + ++ Y E +E AL Q+ + G + L+ +RG +G T T G +L LVGRNN QN+R+TF V ++LWFH + + G+H LLRL G+ P+D+DL F A++ Y+S+ARQS V + PK V K A PGMV Y+ +V+ G+P + AL+
Sbjct: 15 ELRSNWLPARLEQVYQRDRFTISLALRTLKGRGWLDISWHPQAARICISTPPPRVAD--TFTFSDQLRHQLSGLALVDIAEVAPWERVLDLQFAKRPGEAALWHLYVEIMTKYSNVILTGKDN----LIVTAAHQVSSQQSSVRPIQTGDRYELP---PGLTDPIPKLEEPLEKWQERVSLIP-DLLKRQLMKSYRGLSSTLAVGLMAAA--NLESDRTTDSLSNEEWEKLFQ-QWRQWLTALETGK---------------------------------FEPVWTATGYSVMGWGKIG-------------ESPA-NVQELLNEYYTQELNGQEFRQLQHQISQKLQTLLKKLGVKLAEFNQRLQ--QSEKADLYRSQADLLMASLHEWQPGMKSITLADFETSAPVKIPLEPEKNAVQNAQSLYKRHQKMKRARMAIAPLIEAVREEINYLEQVEAALYQVANYRKPGDLQT-----LTEIRG-------------------------------------------ELIEEGYLTIPDYRPQNLGTETEFYRYVTPGGFEL---------LVGRNNQQNDRLTFRVATDYDLWFHTQEIPGSHALLRLPAGQVPDDNDLQFTANITAYYSRARQSEQVPVIYTQPKYVYKPKGAKPGMVIYKNEQVLWGVPQQAIALL 575 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig98.21094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig98.21094.1 >prot_F-serratus_M_contig98.21094.1 ID=prot_F-serratus_M_contig98.21094.1|Name=mRNA_F-serratus_M_contig98.21094.1|organism=Fucus serratus male|type=polypeptide|length=700bp MESRGSRHRELQRTIVPSRMETVYQLGPHDVAVSLRTLSGNIWLRISWNPback to top mRNA from alignment at F-serratus_M_contig98:386563..393108+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig98.21094.1 ID=mRNA_F-serratus_M_contig98.21094.1|Name=mRNA_F-serratus_M_contig98.21094.1|organism=Fucus serratus male|type=mRNA|length=6546bp|location=Sequence derived from alignment at F-serratus_M_contig98:386563..393108+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig98:386563..393108+ >mRNA_F-serratus_M_contig98.21094.1 ID=mRNA_F-serratus_M_contig98.21094.1|Name=mRNA_F-serratus_M_contig98.21094.1|organism=Fucus serratus male|type=CDS|length=4200bp|location=Sequence derived from alignment at F-serratus_M_contig98:386563..393108+ (Fucus serratus male)back to top |