mRNA_F-serratus_M_contig98.21090.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig98.21090.1
Unique NamemRNA_F-serratus_M_contig98.21090.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig98.21090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig98contigF-serratus_M_contig98:181169..184715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003760.1
Exons2
Model size841
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig98.21090.1prot_F-serratus_M_contig98.21090.1Fucus serratus malepolypeptideF-serratus_M_contig98 181223..184552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932761.721883-UTR-F-serratus_M_contig98:181168..1812221622932761.721883-UTR-F-serratus_M_contig98:181168..181222Fucus serratus maleUTRF-serratus_M_contig98 181169..181222 +
1690964461.3449354-UTR-F-serratus_M_contig98:181168..1812221690964461.3449354-UTR-F-serratus_M_contig98:181168..181222Fucus serratus maleUTRF-serratus_M_contig98 181169..181222 +
1622932761.7646785-UTR-F-serratus_M_contig98:184552..1847151622932761.7646785-UTR-F-serratus_M_contig98:184552..184715Fucus serratus maleUTRF-serratus_M_contig98 184553..184715 +
1690964461.3861794-UTR-F-serratus_M_contig98:184552..1847151690964461.3861794-UTR-F-serratus_M_contig98:184552..184715Fucus serratus maleUTRF-serratus_M_contig98 184553..184715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932761.7342162-CDS-F-serratus_M_contig98:181222..1812341622932761.7342162-CDS-F-serratus_M_contig98:181222..181234Fucus serratus maleCDSF-serratus_M_contig98 181223..181234 +
1690964461.36146-CDS-F-serratus_M_contig98:181222..1812341690964461.36146-CDS-F-serratus_M_contig98:181222..181234Fucus serratus maleCDSF-serratus_M_contig98 181223..181234 +
1622932761.7498477-CDS-F-serratus_M_contig98:183940..1845521622932761.7498477-CDS-F-serratus_M_contig98:183940..184552Fucus serratus maleCDSF-serratus_M_contig98 183941..184552 +
1690964461.373162-CDS-F-serratus_M_contig98:183940..1845521690964461.373162-CDS-F-serratus_M_contig98:183940..184552Fucus serratus maleCDSF-serratus_M_contig98 183941..184552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig98.21090.1

>prot_F-serratus_M_contig98.21090.1 ID=prot_F-serratus_M_contig98.21090.1|Name=mRNA_F-serratus_M_contig98.21090.1|organism=Fucus serratus male|type=polypeptide|length=208bp
MGPSLERSVVEVGFLLALVAAIAGFHYTRGFHSAFAHLATDLVAVQQSSP
LDNYLSLLAATVAAYLIARGACVAASRLPESVRSSPSVKVAFIAVSVPAV
ARVLFVTLGSPPLGEHVAVQWLAGNWERNGKRDAAWCARLFVLLLWSQAL
LAVVVAFCSTGWGMLVAIFKLCAGKLLSSGKERSTTASRELERPTYGPTH
QNGHGLL*
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mRNA from alignment at F-serratus_M_contig98:181169..184715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig98.21090.1 ID=mRNA_F-serratus_M_contig98.21090.1|Name=mRNA_F-serratus_M_contig98.21090.1|organism=Fucus serratus male|type=mRNA|length=3547bp|location=Sequence derived from alignment at F-serratus_M_contig98:181169..184715+ (Fucus serratus male)
TGAGGTTCTATACTCTGCCCTATCTTTGACAAAACAAAAGCCGTCACGTC
ACCAATGGGGCCGTCGGTGAGGTTATGCTGTGTTCTTACTCCTTTCCCTA
GGCAGACAGCAACAGGTCGGCTTTCCAGCGATATACGGTTGTGCAACAAC
CTCTGTAGACTAGCCGGATGACATCGTTCATCGTTGAGTCGTATAACGAC
AAAAAATCTCGTGCTTGTCTGGAGTCGGAGAATCGTCACGTGCTATATCC
TCGGCTAGTGTACTGTACTGAACGGTAGCGGCCGTGTGGTATAGGTATTG
CTCCGCGCTCCGCAGACCAGCGACTATACGTAGGATCCACATCTACACAA
GTATACTGGTATAGTGGTAGTAACACCACCGCAGTACAGCAGGAGTTGAA
CGCCTACCTCGGTACTCCCAGAAAACTCTGAACACATCCAAATCTTCCGG
ACATCCACAACGTCTGGGAGGCTTAACTTCACAGGGTTCGAGCACAGGCA
CTGAACATGCCTAGAATAGGATACGTTAGACGAGCATATACAAGTACCTC
CGAATCATCCGCTATAAGTGATCCCCAGGTATGAGAGGAATCCCGTAAGT
AAGCACTAGATTCAGCCTTAGTATGGAGATGAGCAGGCTGACGCGGGACG
CCACTGTCGAAACCGTCTCTCGAGACCAAGTTCTCAGGCACAAACGCGGA
CAGTGGAATATTCTTTTTCCTGTTCAGCTGACCACGAGCAGGATTGGCAA
CCTTACCAGGTTGATCCATACTCTTGCAATATGTGTGACCATACATAGTC
TACATACATACCAGGTACGCATTAACCAGATAGAGAATGAGCAGGCTGAC
GCGGGACGGGACGGCCGAACCCGTCTCGCGAGACGAAATTCTCAGGCGCA
AATGGGGACAGGGAAAAAAACGTTTTTCCTGTTCTTCAGCTGACCACGAG
CAGGATTGGCAACCTTACCCGGTTGATCCATATTCTACTACCAACAGTAT
TTTGGTGACATAAAGAACGATTTTTTTTTTTAAGAACGAGCTTTTCTTTA
AAGATCCAGAATACGTTATTTGACGTAGCGCACGCCCTTCTACGATTTTT
ACCTATTGAGTATGCTCAAACGAAAGGGCTTCCTCATGGAAACATGTCAA
TACCTCAATCGAGGCCATCGACCAATTTACGACCCCGTTACAGCAAAAAT
AGTGTTTTTTCCATAAGAAAAATCGATTCCTGGCAACTGCGCCGACCATT
TGGACTTGTTTTTCAAACCCCTGTAACTTTTGATTGGCATATCGTACATT
TTTCATTTTTTTATGTTTGTGATCGTATGGATAAGAGCTTTCATTTGAGC
TGTCGCCGAGCCGAATCGGTAAGATGGTTGAAAAAGTAAAATTTCGGGCC
TCGTTCTTAAAAAAAAAGTTCGTTCTTTATTTCACCAAATTACTGTTTAC
CGTAGTATAAGTGATACCATACTGTACCATAAGTGGGCGTTGGAAAAGAT
ACCGGTAAGTACACAAGAACTGGTCCGCATTGATACCGATAAAGGCAGCA
CCCGTTACTCGAATCACCTTGAGGGCTACTGGCCCTTCGCCGGCGGACTC
TCAGTGAACGCTATCAGTATGCACCTGCGTAACCTGACCACCTAAATGCG
TTCAGATTTTTTCTATATATTCATACTCAGGACTGACCCGATGTCGGTTT
AAATAAATGAACGGACGCGGCCTTGGAAAGCGGGAGGAATCCCGTGAGTT
ATTAATAGTACCAGGTTTAGCCTGGGTGCGGAAAATGGGCGGTCTGGCGC
GGGATCCTGTCTCGCGAGACCAAACTCCTATGCGCAAACGGGGACTCAAC
TGACCACGAGGAGGGTTGGCAATAATTGATACATACCAGTATTTCGCTAT
AAGTGATGACCATACATTCATGCCAATTACTGTACACCACTTCCACAGCA
ATTTCCTGGTACACTATTACATACGGAGTAGTAATAATACTCGTGTGTTT
TGAAACAGCCCCTAACAAGACAAGGCCTCCAAGGTCATGATAACTTTGTG
TGATTGGTGGAGGCACACCCGCCAAAGAAAAGCTTCCGTTGTAGTTCCTG
CTTCAGATTGAAAGCTTACCATCATACCACTAAGCTCTTGGTCCTTTCCA
GGGGAGTGTACACGCATATGTTAAACGACCGTTTTGTTTCCAGTTGTGTA
CACATTGCTCTTGAATGTTGGGATCAAATCTTCTTCGTACCCAAAGATGT
CGTCTATAGACGCGGATTGAATTCCCGATGTTCTTGGGTGGTTAACATTA
GGCAAGGGTTTTGTCGCGGTTTGATTCCTTGCTGGTTTGAGTAGCGGGTT
GTTATCATGATGTGACCCGTTGACCTCCGTACCTCTTTGTGACCACGTAC
AGTACAACCGGATTGGCAACCGCGTATATTACGGAATATGGTTGTGGCCG
GATCGGTTAATGTGAAAAACACACACACACACACACACCCGTATTCATAC
ATGGCACTGTAGACCTACCGTTCTGCTCGTCCACAGCCAGCACTTCTACA
GAACTAGTCTGCGATCGAAACGTTTTTGGTGGCGCTGTTGCTTTGTGGAT
TCCTTTTCCAGAAATTTGTTCCGTGGGTCTCCGCTGATCCCTGTGCTCCA
TCGCCGCCCGTGTGCCCATCCTTCCCACCCTCAATCTCAATTGCTTTATC
TCAATCGGTTAACGAACTTCTGTACCCTCAAACCCCTCCGGGATCCGGTG
TGTGCTGCTCAACCTTCCCAAGTTGGAGAGGAGCGTCGTGGAGGTGGGAT
TCCTCCTTGCCTTGGTGGCAGCAATCGCGGGCTTCCACTACACACGCGGC
TTCCACTCCGCCTTCGCGCACCTCGCGACCGACCTTGTGGCCGTCCAGCA
AAGCAGCCCGCTAGACAATTACCTGTCCCTGCTCGCGGCGACCGTCGCGG
CGTATCTTATCGCCCGTGGAGCTTGCGTCGCGGCTTCACGTCTGCCGGAG
TCTGTCAGATCAAGTCCATCAGTAAAGGTGGCTTTCATTGCGGTATCGGT
GCCGGCTGTGGCGCGGGTCCTCTTTGTCACGTTGGGTTCTCCTCCGCTGG
GCGAACACGTCGCTGTGCAGTGGCTCGCGGGCAACTGGGAGCGTAACGGG
AAGCGGGACGCGGCGTGGTGCGCTCGGCTCTTCGTGCTGCTTCTCTGGTC
GCAGGCCTTGCTCGCCGTTGTCGTGGCATTTTGCAGCACTGGCTGGGGAA
TGCTGGTGGCCATATTTAAGTTATGCGCGGGGAAACTATTGAGCAGCGGC
AAGGAGCGCTCGACTACCGCCTCTCGGGAGCTCGAGCGTCCAACCTACGG
GCCTACTCATCAAAACGGGCACGGACTGTTGTAGGCGGGTGCGGTGGTGA
ATGATGTAACGCTAAAGCACCAAGGCAGAGGTTGATGTACCCTTGCTAGC
CAAACCCGTTTTGTGTTCCTCGGTAAAGAGGTCATTCGAAGTACGTGCGT
AAGAAATACTGTAAGTCTTAGGGACAAGCGCAGAGGGCGGGGGCGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig98:181169..184715+

>mRNA_F-serratus_M_contig98.21090.1 ID=mRNA_F-serratus_M_contig98.21090.1|Name=mRNA_F-serratus_M_contig98.21090.1|organism=Fucus serratus male|type=CDS|length=1248bp|location=Sequence derived from alignment at F-serratus_M_contig98:181169..184715+ (Fucus serratus male)
ATGGGGCCGTCGATGGGGCCGTCGTTGGAGAGGAGCGTCGTGGAGGTGGG
ATTCCTCCTTGCCTTGGTGGCAGCAATCGCGGGCTTCCACTACACACGCG
GCTTCCACTCCGCCTTCGCGCACCTCGCGACCGACCTTGTGGCCGTCCAG
CAAAGCAGCCCGCTAGACAATTACCTGTCCCTGCTCGCGGCGACCGTCGC
GGCGTATCTTATCGCCCGTGGAGCTTGCGTCGCGGCTTCACGTCTGCCGG
AGTCTGTCAGATCAAGTCCATCAGTAAAGGTGGCTTTCATTGCGGTATCG
GTGCCGGCTGTGGCGCGGGTCCTCTTTGTCACGTTGGGTTCTCCTCCGCT
GGGCGAACACGTCGCTGTGCAGTGGCTCGCGGGCAACTGGGAGCGTAACG
GGAAGCGGGACGCGGCGTGGTGCGCTCGGCTCTTCGTGCTGCTTCTCTGG
TCGCAGGCCTTGCTCGCCGTTGTCGTGGCATTTTGCAGCACTGGCTGGGG
AATGCTGGTGGCCATATTTAAGTTATGCGCGGGGAAACTATTGAGCAGCG
GCAAGGAGCGCTCGACTACCGCCTCTCGGGAGCTCGAGCGTCCAACCTAC
GGGCCTACTCATCAAAACGGGCACGGACTGTTGTAGTTGGAGAGGAGCGT
CGTGGAGGTGGGATTCCTCCTTGCCTTGGTGGCAGCAATCGCGGGCTTCC
ACTACACACGCGGCTTCCACTCCGCCTTCGCGCACCTCGCGACCGACCTT
GTGGCCGTCCAGCAAAGCAGCCCGCTAGACAATTACCTGTCCCTGCTCGC
GGCGACCGTCGCGGCGTATCTTATCGCCCGTGGAGCTTGCGTCGCGGCTT
CACGTCTGCCGGAGTCTGTCAGATCAAGTCCATCAGTAAAGGTGGCTTTC
ATTGCGGTATCGGTGCCGGCTGTGGCGCGGGTCCTCTTTGTCACGTTGGG
TTCTCCTCCGCTGGGCGAACACGTCGCTGTGCAGTGGCTCGCGGGCAACT
GGGAGCGTAACGGGAAGCGGGACGCGGCGTGGTGCGCTCGGCTCTTCGTG
CTGCTTCTCTGGTCGCAGGCCTTGCTCGCCGTTGTCGTGGCATTTTGCAG
CACTGGCTGGGGAATGCTGGTGGCCATATTTAAGTTATGCGCGGGGAAAC
TATTGAGCAGCGGCAAGGAGCGCTCGACTACCGCCTCTCGGGAGCTCGAG
CGTCCAACCTACGGGCCTACTCATCAAAACGGGCACGGACTGTTGTAG
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