mRNA_F-serratus_M_contig974.21062.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig974.21062.1 vs. uniprot
Match: A0A7S2P1Q9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1Q9_9STRA) HSP 1 Score: 530 bits (1364), Expect = 1.100e-179 Identity = 277/549 (50.46%), Postives = 366/549 (66.67%), Query Frame = 3
Query: 282 SMSEMSDLDAADDGV------YHVRKSRLIRLINWWQVASTYFPHLLLFALGVLVAQMCGEAWNNRDSLME------AIDSTLKT-------------------------SSRDLVFDLGWKSTALFVVFIWWMSRGSSPVYLVDLSTFEPPEEWKVTHDELAEIMRRQGCFTPESVSFMEKILSKSGTGQATAWPPGIIRCLKNPDLPADRSVEAARSEAEIVIYDIVESVLNKAGLQGEDIDILIINCSLFSPTPSLCSMVSHQFNMRSDAQTFNIGGMGCSAGIISIDLAKDLLKAR--PNSIALVVSTENLTQNLYRGNERSMLLQNTLFRVGGAAIILSNKWQDASRSKFKLLYTVRTQGAGKDAFEAVYESEDPLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRQVTKVMKEILEKY-RSPLAKKVPHISYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALLEHHTKPSRATLHDYGNTSSSSIWYEMRYIEEH---SDLRRGQRILQVAFGSGFKCNSAVWICL 1799
S+S+ S + +DG Y VRKS LI +NW V TY P L L +GVL AQ+ + + S +E ID +++T S + K TAL +V + W+ +P Y++ STF+ P+ WKV+H ++ ++M+ QG FT +S+ FME++L++SGTGQ+TAWPPGI++CL+ DRS+ A+R EAE VI+DIVES L KA + +++D+L+INCSLFSPTPSLC+MV +F MR D Q+FN+ GMGC A +IS+ LAKD+L+ R ALVVSTE +T NLYRGNER LLQNTLFR GGAAI+LSN W D R+ +KLL+TVR Q ++A+ VYE++D GVRLSKEIVKVAG+ MEKN T++GPYVLP+SEQ VV +A++ + K+ ++L+ + LA K+P +Y PDFKRGIDHFCIHAGGR VIDGIEKN+ L HT+PSR L +YGNTSSSSIWYEM YI+EH + L++G RI+QVAFGSGFKC S VW+ L
Sbjct: 4 SVSDSSFVSVPEDGPVKDYRDYRVRKSSLIATVNWTHVIGTYLPTLFLVGIGVLFAQLVHQVVTDLSSKVEHKASPGEIDFSIETITAVILGVREIFSNLLSTFLVAPLQSGEGGILSTHVKITALVLVVMGWIVLNDNPTYMLAFSTFKAPDSWKVSHAQIIQMMKNQGSFTDDSIGFMERLLARSGTGQSTAWPPGIVQCLEE-GKETDRSILASRKEAEAVIFDIVESALKKAKVHPKEVDVLVINCSLFSPTPSLCAMVISKFGMRQDIQSFNLSGMGCGASLISVGLAKDMLQRRRLQGGKALVVSTEIITPNLYRGNERGFLLQNTLFRCGGAAIVLSNSWMDGRRAWYKLLHTVRVQSNSEEAYNCVYEAQDGEEQRGVRLSKEIVKVAGKCMEKNMTTIGPYVLPLSEQIPVVTTMAIKFMIKMTGKLLKTCGQEKLAAKLPKKKHYVPDFKRGIDHFCIHAGGRAVIDGIEKNMKLELFHTEPSRMALLNYGNTSSSSIWYEMEYIQEHQKTNPLKKGHRIMQVAFGSGFKCTSGVWLKL 551
BLAST of mRNA_F-serratus_M_contig974.21062.1 vs. uniprot
Match: F0YHH3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH3_AURAN) HSP 1 Score: 575 bits (1483), Expect = 1.740e-179 Identity = 285/524 (54.39%), Postives = 372/524 (70.99%), Query Frame = 3
Query: 270 RNDVSMSEMSDLDAADDGVYHVRKSRLIRLINWWQVASTYFP----HLLLFALGVLVAQMCGEAWNNRDSLMEAIDSTLKTSSRDLVFDLGWKSTALFVVFIWWMSRGSSPVYLVDLSTFEPPEEWKVTHDELAEIMRRQGCFTPESVSFMEKILSKSGTGQATAWPPGIIRCLKNPDLPADRSVEAARSEAEIVIYDIVESVLNKAGLQGEDIDILIINCSLFSPTPSLCSMVSHQFNMRSDAQTFNIGGMGCSAGIISIDLAKDLLKARPNSIALVVSTENLTQNLYRGNERSMLLQNTLFRVGGAAIILSNKWQDASRSKFKLLYTVRTQGAGKDAFEAVYESEDPLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRQVTKVMKEILE--KYRSP------LAKKVP-HISYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALLEHHTKPSRATLHDYGNTSSSSIWYEMRYIEEHSDLRRGQRILQVAFGSGFKCNSAVWICLN 1802
R D S S DA + Y VR+SRLI ++NWW VA T++P H+L+ L L +Q+ + ++ I + + D+ W+ST L + +W+++R PVYLVD TFEPPE W++THDEL MRRQ CFT ES++F+++IL KSGTGQ TAWPPGI RCL++ AD+SVEAAR E+E VI D+V+S L + G ++DILI+NCSLFSPTPSLC+M+ ++F M + +N+ GMGCSA +I I+LA+++L++ PN IALVVSTENLTQNLY GNERSMLLQNTLFR GGAA++LSNKW+D R+KFKLL+ VRTQ G +A++AVYE +D G HGV+L + IV +AG MEKNFT LGPYVLP+SEQ +V ALA +++ K + + L K SP L++ +P I Y PDFKRGIDH+CIHAGGR V+DG+ KNL L H +PS+ L YGNTSSSSIWYEM Y+ + + ++G RILQVAFGSGFKCNSAVW+CL+
Sbjct: 4544 RADSDGSLASIDDATNHAEYKVRRSRLIGMVNWWHVAMTFYPRGTSHVLVTLLCYLASQITFDVLTIGPNVPIEIALGVLRELPPALLDMSWRSTLLGLCLVWYLARHHHPVYLVDFVTFEPPESWRLTHDELMTCMRRQRCFTEESIAFLKRILDKSGTGQRTAWPPGITRCLRDESKTADQSVEAARKESETVICDVVQSCLQRTGTLPTEVDILIVNCSLFSPTPSLCAMIMNRFKMCENVMAYNLSGMGCSASLIGIELAQNVLRSHPNKIALVVSTENLTQNLYHGNERSMLLQNTLFRCGGAAMLLSNKWRDGQRAKFKLLHVVRTQSTGNEAYDAVYECQDASGEHGVKLDRNIVNIAGHTMEKNFTILGPYVLPLSEQMRVAYALAKKKLCKYLCKALRLHKEESPSRMTGILSRWIPAKIPAYVPDFKRGIDHWCIHAGGRAVVDGVAKNLKLQPEHAEPSKYALFHYGNTSSSSIWYEMDYVRKVQNPKKGHRILQVAFGSGFKCNSAVWLCLH 5067
BLAST of mRNA_F-serratus_M_contig974.21062.1 vs. uniprot
Match: A0A7S2RV91_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RV91_9STRA) HSP 1 Score: 525 bits (1353), Expect = 3.480e-178 Identity = 270/542 (49.82%), Postives = 367/542 (67.71%), Query Frame = 3
Query: 264 MRRNDVSMSEMSDLDAADDGV-----YHVRKSRLIRLINWWQVASTYFPHLLLFALGVLVA----QMCGEAWNNRDSLMEAIDSTLKTS-------SRDLVFDLGWKSTALF----------VVFIWWMSRGSSPVYLVDLSTFEPPEEWKVTHDELAEIMRRQGCFTPESVSFMEKILSKSGTGQATAWPPGIIRCLKNPDLPADRSVEAARSEAEIVIYDIVESVLNKAGLQGEDIDILIINCSLFSPTPSLCSMVSHQFNMRSDAQTFNIGGMGCSAGIISIDLAKDLLKARPNS-IALVVSTENLTQNLYRGNERSMLLQNTLFRVGGAAIILSNKWQDASRSKFKLLYTVRTQGAGKDAFEAVYESEDPLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRQVTKVMKEILEKYRSPLAKKVPHISYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALLEHHTKPSRATLHDYGNTSSSSIWYEMRYIEEH---SDLRRGQRILQVAFGSGFKCNSAVWICL 1799
MRR D SD+ A D YHVRKS ++R+INW V ++Y P L + +GVL+A Q+ E + N D +++S + S+ + L + A+F +V + W+ R +PVYL+ +TF+ P+ WK+TH + ++M+ QG F+PE++ FME++L++SG GQ+TA+PPGI++CLK + D+S+E +R EA+ +I+DIVE + KA ++ DID+L+INCSLFSPTPSLC+MV F MR D ++N+ GMGC A ++++DLA +L+ R S ALV+STE LT NLY GNER LLQNTLFR GGAA++LSN W D R+ FKLL+ VRTQG+G DA++ VYE+ED GN GVRLSKE+VKVAG+ MEKN T++GPYVLPISEQ+K++ +L R K +I KK P + Y PDFKRGIDHFCIHAGGR VIDGIEKN+ L +HT+PSR TL ++GNTSSSSIWYE+ YI E + L++G R++Q+ FGSGFKC S VW+ L
Sbjct: 11 MRRVDSE----SDMSTAGDETTSYRNYHVRKSSMMRMINWVHVFTSYIPMLFVLGIGVLIALIMEQVASEFFQNNDVQTVSVESVIAIVGAFKGLISKQVELLLNLRKEAIFAPSVEICFVILVVMAWILRMDNPVYLLSFATFKSPDSWKITHADFLKLMKEQGSFSPENMGFMERLLARSGIGQSTAFPPGIVQCLKGKKV--DKSIETSRQEAKAIIFDIVERAMKKANVEPSDIDVLVINCSLFSPTPSLCAMVISHFKMRHDILSYNLSGMGCGASLLAVDLAAKMLQRRTISGKALVISTEILTPNLYYGNERGFLLQNTLFRCGGAAMVLSNNWFDGHRALFKLLHLVRTQGSGDDAYQCVYEAEDEDGNRGVRLSKEVVKVAGKCMEKNMTTMGPYVLPISEQFKLLLSLIARYALKSYGKIFN------TKKYPIVKVYVPDFKRGIDHFCIHAGGRAVIDGIEKNMKLESYHTEPSRMTLMNFGNTSSSSIWYELEYIMEQQKSNPLKKGDRVMQIGFGSGFKCCSGVWLKL 540
BLAST of mRNA_F-serratus_M_contig974.21062.1 vs. uniprot
Match: B8BZW4_THAPS (Beta-ketoacyl-coa synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZW4_THAPS) HSP 1 Score: 524 bits (1350), Expect = 1.430e-177 Identity = 277/547 (50.64%), Postives = 363/547 (66.36%), Query Frame = 3
Query: 288 SEMSDLDAADDGV------YHVRKSRLIRLINWWQVASTYFPHLLLFALGVLVAQMCGEAWNNRDSLME------AIDSTLKTSSRDL-------------------------VFDLGWKSTALFVVFIWWMSRGSSPVYLVDLSTFEPPEEWKVTHDELAEIMRRQGCFTPESVSFMEKILSKSGTGQATAWPPGIIRCLKNPDLPADRSVEAARSEAEIVIYDIVESVLNKAGLQGEDIDILIINCSLFSPTPSLCSMVSHQFNMRSDAQTFNIGGMGCSAGIISIDLAKDLLKARPNS--IALVVSTENLTQNLYRGNERSMLLQNTLFRVGGAAIILSNKWQDASRSKFKLLYTVRTQGAGKDAFEAVYESEDPLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRQVTKVMKEILEKY-RSPLAKKVPHISYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALLEHHTKPSRATLHDYGNTSSSSIWYEMRYIEEH---SDLRRGQRILQVAFGSGFKCNSAVWICL 1799
SE S + +DG Y VRKS LI +NW V TY P + + +GVL+AQ+ + +E ID +++T + L + K TAL +V I W+ +P+Y++ STF+ P+ WKV+HD++ ++M+ Q CFT ES+ FM+++L +SGTGQ+TAWPPGI++CL+ DRS+EA+R EAE VI+DIVES L KA +++D+L+INCSLFSPTPSLC+MV +F MR D Q+FN+ GMGC A +IS+ LAKD+L+ R S ALVVSTE +T NLY GNER LLQNTLFR GGAAI+LSN W D R+ +KLL+TVR Q ++A+ VYE++D G GV+LSKEIVKVAG+ MEKN T++GPYVLP+SEQ V +ALR K++ L+ + LA K+P+ +Y PDFKRGIDHFCIHAGGR VIDGIEKN+ L HT+PSR L +YGNTSSSSIWYEM YI+E + L++G RI+QVAFGSGFKC S VW+ L
Sbjct: 6 SESSFVSVPEDGPVKDYRDYRVRKSSLIATVNWSHVIGTYLPTMFIVGIGVLLAQIVYQVVLTLSYKVEHKASPGEIDFSIETITAVLLGVRQIFSSLINSFIVAPLQSGEGGILSPHVKITALVLVVIGWIVNMDNPIYMLAFSTFKAPDSWKVSHDQIIQMMKNQDCFTDESIDFMKRLLERSGTGQSTAWPPGIVQCLEE-GKETDRSIEASRKEAETVIFDIVESALKKAKCHPKEVDVLVINCSLFSPTPSLCAMVISKFGMRQDIQSFNLSGMGCGASLISVGLAKDMLQRRRFSGGKALVVSTEIITPNLYHGNERGFLLQNTLFRCGGAAIVLSNSWFDGRRAWYKLLHTVRVQSNSEEAYHCVYEAQDEGGKRGVKLSKEIVKVAGKCMEKNMTTIGPYVLPLSEQIPVATTIALRYSFKMLGIFLKMCGQEKLAAKLPNKKHYVPDFKRGIDHFCIHAGGRAVIDGIEKNMKLELFHTEPSRMALLNYGNTSSSSIWYEMEYIQETQKTNPLKKGHRIMQVAFGSGFKCTSGVWLKL 551
BLAST of mRNA_F-serratus_M_contig974.21062.1 vs. uniprot
Match: A0A1E7FUK9_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FUK9_9STRA) HSP 1 Score: 518 bits (1335), Expect = 2.490e-176 Identity = 257/435 (59.08%), Postives = 326/435 (74.94%), Query Frame = 3
Query: 516 VFDLGWKSTALFVVFIWWMSRGSSPVYLVDLSTFEPPEEWKVTHDELAEIMRRQGCFTPESVSFMEKILSKSGTGQATAWPPGIIRCLK----NPD--LPADRSVEAARSEAEIVIYDIVESVLNKAGLQGEDIDILIINCSLFSPTPSLCSMVSHQFNMRSDAQTFNIGGMGCSAGIISIDLAKDLLKARPNSIALVVSTENLTQNLYRGNERSMLLQNTLFRVGGAAIILSNKWQDASRSKFKLLYTVRTQGAGKDAFEAVYESEDPLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRQVTKVMKEILEKYRSPLAKKVPHISYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALLEHHTKPSRATLHDYGNTSSSSIWYEMRYI---EEHSDLRRGQRILQVAFGSGFKCNSAVWI 1793
+F K+TAL +V WM R SP+Y++ +TF+ PE+WK DE+ +M+RQ CFT ES++FM +IL +SGTG ATAWPPGI +CLK NP L ADRS++A+R EA+IVI+D+VE L +A ++ DID+LI+NCSLFSPTPSLC+MV QF MRSD +T+N+ GMGCSA +IS+DLAK LL + + ALVVSTE +T NLY GNER L+QNTLFR GGAAI+LSN W D R+ +KLL+TVR QG+G+ A+E VYE+ED G GVRLSK+IVKVAG+ MEKNFT LGP VLP++EQ VV ++ +R + +K I A K+P + Y PDFKRGIDHFCIHAGGR VIDGIEKNL L E+HT+PSR L++YGNTSSSSIWYE+ YI ++ + L++G RI+QVAFGSGFKC S VW+
Sbjct: 49 IFSPAVKTTALILVVGGWMIRRDSPIYMLSFATFKAPEDWKCDQDEIMTMMKRQKCFTQESLNFMRRILDRSGTGPATAWPPGITQCLKPDPENPSDHLMADRSIDASRKEAQIVIFDVVEKALKEANVKPRDIDVLIVNCSLFSPTPSLCAMVVSQFGMRSDVETYNLSGMGCSASLISVDLAKKLLGRKGSRKALVVSTEVITPNLYHGNERGFLIQNTLFRCGGAAIVLSNNWLDGRRAWYKLLHTVRVQGSGQAAYECVYETEDTKGERGVRLSKDIVKVAGKTMEKNFTMLGPSVLPVTEQALVVWSIVVRFL---LKSIGNAVGEETAAKLPKVKPYVPDFKRGIDHFCIHAGGRAVIDGIEKNLKLEEYHTEPSRKALYNYGNTSSSSIWYELEYIHYEQKTNPLKKGDRIMQVAFGSGFKCTSGVWL 480 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig974.21062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig974.21062.1 >prot_F-serratus_M_contig974.21062.1 ID=prot_F-serratus_M_contig974.21062.1|Name=mRNA_F-serratus_M_contig974.21062.1|organism=Fucus serratus male|type=polypeptide|length=535bp MGEKDARAGMAAHQPGMRRNDVSMSEMSDLDAADDGVYHVRKSRLIRLINback to top mRNA from alignment at F-serratus_M_contig974:153413..181324- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig974.21062.1 ID=mRNA_F-serratus_M_contig974.21062.1|Name=mRNA_F-serratus_M_contig974.21062.1|organism=Fucus serratus male|type=mRNA|length=27912bp|location=Sequence derived from alignment at F-serratus_M_contig974:153413..181324- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig974:153413..181324- >mRNA_F-serratus_M_contig974.21062.1 ID=mRNA_F-serratus_M_contig974.21062.1|Name=mRNA_F-serratus_M_contig974.21062.1|organism=Fucus serratus male|type=CDS|length=3210bp|location=Sequence derived from alignment at F-serratus_M_contig974:153413..181324- (Fucus serratus male)back to top |