mRNA_F-serratus_M_contig973.21060.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig973.21060.1
Unique NamemRNA_F-serratus_M_contig973.21060.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig973.21060.1 vs. uniprot
Match: D7FTH3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH3_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 4.950e-6
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = -3 
Query:  373 KCNHMGCGKRPSYGLSGSGRPEVCAEHAGEGMIN 474
            +C H GC K PS+G  GS RPE+CA+H+ EGM+N
Sbjct:    8 RCGHPGCMKHPSHGKDGSKRPEICAQHSQEGMVN 41
[Close]
BLAST of mRNA_F-serratus_M_contig973.21060.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.430e-5
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = -3 
Query:  355 CNHMGCGKRPSYGLSGSGRPEVCAEHAGEGMINVVSKRC 471
            C  +GC  RPSYG   S + E C++HA +GM+NVV KRC
Sbjct:  248 CEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRC 286
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig973.21060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTH3_ECTSI4.950e-658.82EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FLW1_ECTSI2.430e-553.85EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig973contigF-serratus_M_contig973:19407..19882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size478
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932755.8197591-CDS-F-serratus_M_contig973:19406..198471622932755.8197591-CDS-F-serratus_M_contig973:19406..19847Fucus serratus maleCDSF-serratus_M_contig973 19407..19847 +
1690964458.3587704-CDS-F-serratus_M_contig973:19406..198471690964458.3587704-CDS-F-serratus_M_contig973:19406..19847Fucus serratus maleCDSF-serratus_M_contig973 19407..19847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932755.8414774-UTR-F-serratus_M_contig973:19847..198821622932755.8414774-UTR-F-serratus_M_contig973:19847..19882Fucus serratus maleUTRF-serratus_M_contig973 19848..19882 +
1690964458.3727024-UTR-F-serratus_M_contig973:19847..198821690964458.3727024-UTR-F-serratus_M_contig973:19847..19882Fucus serratus maleUTRF-serratus_M_contig973 19848..19882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig973.21060.1prot_F-serratus_M_contig973.21060.1Fucus serratus malepolypeptideF-serratus_M_contig973 19407..19847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig973.21060.1

>prot_F-serratus_M_contig973.21060.1 ID=prot_F-serratus_M_contig973.21060.1|Name=mRNA_F-serratus_M_contig973.21060.1|organism=Fucus serratus male|type=polypeptide|length=147bp
RATELALFLCTADALSDVPRAELPLSTSCNVPVGSVSIAPSDGAFPGEVD
HSRQCVLRAKLPLRAALDTVGWKLIAVTVATHPATYGHHTLGRVLAAEFS
LSTALDAERRDLGAVLAGAPLTHDVDHALTGMFSANLGPATAAQAI*
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mRNA from alignment at F-serratus_M_contig973:19407..19882+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig973.21060.1 ID=mRNA_F-serratus_M_contig973.21060.1|Name=mRNA_F-serratus_M_contig973.21060.1|organism=Fucus serratus male|type=mRNA|length=476bp|location=Sequence derived from alignment at F-serratus_M_contig973:19407..19882+ (Fucus serratus male)
CGTGCGACAGAGCTTGCTCTCTTTCTGTGCACAGCTGACGCCCTGTCTGA
CGTGCCTAGAGCAGAACTTCCTCTTTCTACTTCCTGCAACGTCCCCGTAG
GTAGCGTGAGTATAGCACCCAGTGATGGCGCATTTCCTGGTGAAGTCGAT
CATTCCCGGCAGTGCGTGCTGCGCGCAAAACTGCCGCTTCGTGCTGCCCT
CGACACCGTAGGTTGGAAACTTATCGCAGTCACCGTGGCCACACATCCTG
CGACCTACGGTCACCATACCCTTGGCCGAGTGCTGGCTGCAGAATTCTCT
CTTTCCACTGCCCTTGACGCCGAACGTCGGGATCTTGGGGCAGTTTTGGC
GGGCGCACCTCTTACTCACGACGTTGATCATGCCCTCACCGGCATGTTCA
GCGCAAACCTCGGGCCTGCCACTGCCGCTCAAGCCATATGAAGGCCGTTT
ACCACACCCCATGTGGTTGCACTTCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig973:19407..19882+

>mRNA_F-serratus_M_contig973.21060.1 ID=mRNA_F-serratus_M_contig973.21060.1|Name=mRNA_F-serratus_M_contig973.21060.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig973:19407..19882+ (Fucus serratus male)
CGTGCGACAGAGCTTGCTCTCTTTCTGTGCACAGCTGACGCCCTGTCTGA
CGTGCCTAGAGCAGAACTTCCTCTTTCTACTTCCTGCAACGTCCCCGTAG
GTAGCGTGAGTATAGCACCCAGTGATGGCGCATTTCCTGGTGAAGTCGAT
CATTCCCGGCAGTGCGTGCTGCGCGCAAAACTGCCGCTTCGTGCTGCCCT
CGACACCGTAGGTTGGAAACTTATCGCAGTCACCGTGGCCACACATCCTG
CGACCTACGGTCACCATACCCTTGGCCGAGTGCTGGCTGCAGAATTCTCT
CTTTCCACTGCCCTTGACGCCGAACGTCGGGATCTTGGGGCAGTTTTGGC
GGGCGCACCTCTTACTCACGACGTTGATCATGCCCTCACCGGCATGTTCA
GCGCAAACCTCGGGCCTGCCACTGCCGCTCAAGCCATATGACGTGCGACA
GAGCTTGCTCTCTTTCTGTGCACAGCTGACGCCCTGTCTGACGTGCCTAG
AGCAGAACTTCCTCTTTCTACTTCCTGCAACGTCCCCGTAGGTAGCGTGA
GTATAGCACCCAGTGATGGCGCATTTCCTGGTGAAGTCGATCATTCCCGG
CAGTGCGTGCTGCGCGCAAAACTGCCGCTTCGTGCTGCCCTCGACACCGT
AGGTTGGAAACTTATCGCAGTCACCGTGGCCACACATCCTGCGACCTACG
GTCACCATACCCTTGGCCGAGTGCTGGCTGCAGAATTCTCTCTTTCCACT
GCCCTTGACGCCGAACGTCGGGATCTTGGGGCAGTTTTGGCGGGCGCACC
TCTTACTCACGACGTTGATCATGCCCTCACCGGCATGTTCAGCGCAAACC
TCGGGCCTGCCACTGCCGCTCAAGCCATATGA
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