mRNA_F-serratus_M_contig972.21058.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig972.21058.1
Unique NamemRNA_F-serratus_M_contig972.21058.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig972.21058.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.470e-6
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:  149 KESEEAKQVAVETLLGLKNSQGSKSGEPLDEASAQAMAA 265
            KE+E+AKQ+AVETLLGLKNSQGSK G P+DEASAQA+ A
Sbjct:  744 KENEDAKQLAVETLLGLKNSQGSKGGGPMDEASAQAVVA 782
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BLAST of mRNA_F-serratus_M_contig972.21058.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.950e-6
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:  149 KESEEAKQVAVETLLGLKNSQGSKSGEPLDEASAQAMAA 265
            KE+E+AKQ+AVETLLGLKNSQGSK G P+DEASAQA+ A
Sbjct:  758 KENEDAKQLAVETLLGLKNSQGSKGGGPMDEASAQAVVA 796
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig972.21058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM00_ECTSI4.470e-679.49Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
A0A6H5JM19_9PHAE4.950e-679.49Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig972contigF-serratus_M_contig972:279874..282326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1760
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig972.21058.1prot_F-serratus_M_contig972.21058.1Fucus serratus malepolypeptideF-serratus_M_contig972 279962..281536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932754.0776-UTR-F-serratus_M_contig972:279873..2799611622932754.0776-UTR-F-serratus_M_contig972:279873..279961Fucus serratus maleUTRF-serratus_M_contig972 279874..279961 +
1690964457.4774368-UTR-F-serratus_M_contig972:279873..2799611690964457.4774368-UTR-F-serratus_M_contig972:279873..279961Fucus serratus maleUTRF-serratus_M_contig972 279874..279961 +
1622932754.1287851-UTR-F-serratus_M_contig972:281536..2823261622932754.1287851-UTR-F-serratus_M_contig972:281536..282326Fucus serratus maleUTRF-serratus_M_contig972 281537..282326 +
1690964457.5123715-UTR-F-serratus_M_contig972:281536..2823261690964457.5123715-UTR-F-serratus_M_contig972:281536..282326Fucus serratus maleUTRF-serratus_M_contig972 281537..282326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932754.0968802-CDS-F-serratus_M_contig972:279961..2800451622932754.0968802-CDS-F-serratus_M_contig972:279961..280045Fucus serratus maleCDSF-serratus_M_contig972 279962..280045 +
1690964457.4930265-CDS-F-serratus_M_contig972:279961..2800451690964457.4930265-CDS-F-serratus_M_contig972:279961..280045Fucus serratus maleCDSF-serratus_M_contig972 279962..280045 +
1622932754.1144571-CDS-F-serratus_M_contig972:280738..2815361622932754.1144571-CDS-F-serratus_M_contig972:280738..281536Fucus serratus maleCDSF-serratus_M_contig972 280739..281536 +
1690964457.502659-CDS-F-serratus_M_contig972:280738..2815361690964457.502659-CDS-F-serratus_M_contig972:280738..281536Fucus serratus maleCDSF-serratus_M_contig972 280739..281536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig972.21058.1

>prot_F-serratus_M_contig972.21058.1 ID=prot_F-serratus_M_contig972.21058.1|Name=mRNA_F-serratus_M_contig972.21058.1|organism=Fucus serratus male|type=polypeptide|length=294bp
MAAAARGVAVDSSSRNSTKPKESEEAKQVAVETLLGLKNSQGSKSGEPLD
EASAQAMAAVTTAAVSAAAAAAQEAAAHASAAGADDDSAASAAAAAAATA
KAVAQAVAVASNLATERERAPTLGRHSDAPVVGEGKETASAVTATTDDSQ
KPATGGGGDNKLAGVDDGKEPATTGDGGKLTAANHSDKPAAAEKNGSRKA
DGVAPNGDGNAKGEKAPVEAKEVSPSPAGVRAPAHGGPEEAASREAFAGR
SEQSTQDATAGSKRRAAEPPCSEDDAVPADAISKRRQTLASPV*
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mRNA from alignment at F-serratus_M_contig972:279874..282326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig972.21058.1 ID=mRNA_F-serratus_M_contig972.21058.1|Name=mRNA_F-serratus_M_contig972.21058.1|organism=Fucus serratus male|type=mRNA|length=2453bp|location=Sequence derived from alignment at F-serratus_M_contig972:279874..282326+ (Fucus serratus male)
TGCAGCAAAACCGTCCCCCTCCGCTCCCCTTTCGGGCCTGAGCGGGAAAA
CGCCTCCGTTTGCGGTGACGGCCGCTGCCGCCGCCGCGATGGCCGCCGCC
GCGCGCGGTGTCGCAGTTGATTCCAGTTCCCGTAACAGTACCAAGCCCAA
GGAAAGCGAGGAAGCGAAGCAGGTGGACTATTCGTAGATTTAATCAGACT
TCACACTACTACCACCCAGGCTTGTGTTTGAGAAATCTCTTCACATCTTG
GCCAAAACGAAAATGTATCTTTACAGTGCGTGGTGCTCGGCGTCGTTATC
GTTATCGTTAGGCTTGGGGAGGGAAGAGGGACGTACAGGAGACCACTGGG
GAAGGAGGGTTACTATATACCAGTGTGCTAATTTTTTTTTTGATATTCCG
AAGTATACACAAAGCATGTTTTTAGTAAACAGTAAAACGTGGCCTCGTGA
ACGGTACTGGTACGCTTGTTACCGATCATCATGTGATGGGTTGAATCGCT
CAAGGTTGGCGAATATTGTTTCGCCGCGATGGACGGCGCAACACCTTTTC
CTTACGGCCGATACTTTGGGCACGAGACTCTTGACTTGAACGTGTGTACA
GCACCTTCAGCGTTGTTGCTGACCTTCTCTTACCAATCCGGCTTTTACGC
CACTCTGAAAATTACCCCCGTTATCCTTGCAGGATAAATTTATCTGCAAA
GCTGTCAGCACCTCTCGATTCCTTCGCTGATTCCTTGCCTCTTAATCTGG
CATTTTCCCCCTCACCTCAAACTTTTGTTTTGCCTCTCGCCCCCTTCCAT
CCCTTTCTTCCACTTCGTGCCATGCCACGGCACCTCTTGTCTACACATCA
CCGCCTATGCTATAGGTGGCGGTAGAGACCCTCCTCGGTCTGAAGAACTC
TCAAGGGTCGAAGAGCGGCGAACCATTGGACGAGGCGTCGGCGCAAGCCA
TGGCGGCAGTGACGACGGCGGCGGTCTCCGCTGCTGCAGCAGCCGCCCAG
GAGGCCGCCGCTCACGCCTCGGCCGCCGGTGCGGATGACGACAGCGCGGC
TTCGGCGGCTGCTGCAGCAGCGGCGACGGCCAAGGCGGTGGCGCAGGCGG
TGGCGGTGGCAAGCAACCTTGCGACGGAGAGAGAGCGGGCCCCCACCTTG
GGGAGGCATTCCGACGCGCCCGTGGTCGGCGAAGGAAAGGAAACCGCTTC
GGCGGTGACAGCGACGACCGATGATAGTCAGAAGCCAGCAACTGGTGGTG
GTGGTGATAACAAACTGGCAGGGGTGGATGACGGTAAGGAGCCGGCAACG
ACGGGTGATGGTGGTAAGCTGACAGCGGCCAATCATAGTGACAAACCGGC
AGCGGCCGAGAAAAATGGGAGCAGGAAGGCGGACGGTGTAGCGCCAAATG
GCGATGGCAATGCTAAGGGGGAAAAAGCGCCAGTGGAGGCGAAAGAGGTT
TCACCGTCGCCGGCAGGAGTGCGGGCGCCGGCGCACGGGGGGCCGGAAGA
AGCGGCTTCGCGCGAGGCGTTTGCGGGGAGATCAGAGCAATCGACTCAGG
ATGCGACGGCGGGAAGCAAGCGTCGAGCAGCAGAGCCGCCGTGTTCAGAA
GACGATGCAGTTCCCGCCGACGCGATATCCAAGCGGAGGCAAACTTTGGC
TTCTCCTGTTTGAGTTACTAAAAACGTCAAAACCTACTGTCGTACTTTAA
CAGCGTACTTTAATAACGGTAACCAGCGTGTGACACAGATGTTTCAATAC
GATTTTGCGTTAGGCTCGCGTACTTGTCTCTCCCTTGAGCCAGCTACTTC
CTTGCCATTTTGTTGAGGTCGCGAGGTTTTCAAGGTGAGCCATATGGTCT
CGCTTTCGCCGAGCATTGGATTGCCACGAGCATTGTTTGCGTATACGGTC
CAAGGTAAAGAGGCGTTCCGGCAAGCCGAGAACCGCGGGGGGTAGTTTGC
GGTGCGGGTAGGCGACAGGGGACGGGGGAAGGCGTCGTGTGGACGATGAA
ACGTGAAGCGATTCCCAAGTGCGTCAAAAAAAAGCTCGGGTACATTGTTG
GAGACTTGGATGCGTAGTGGGTCGTATCAGTCAGCGTGTACCATATAAAA
AGGAAGGATTGGTTGTTGAGAGAGATTTTCCGAGTGGGGGGCTGGTCAAC
GGATTTTTTTCACCCAGCGTTTTTTTTGCGTTGGTTTTTGTTTGGAACTC
TTTTGCGTTGTTGTTTTTTCGATCAAGCGATAAAAGCGGAGGACCGTCTC
CCTTTCCGGCGCGCGATCATGTGTCCGTGGCGACATGTAAGTTGATTTCT
TCGGTATCCGCAATATAATCTTGTGCGTGTGTGTATACACTTGTAGGTGG
GCCTGAGTGGTAATGGCGTTTTCGATCACGAGACGCACAAGGACAAGGAC
TTTTGGTGATCGTGAAAAAGGGGAGAGGAGAAAGGAGTTACCAATCAATG
TAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig972:279874..282326+

>mRNA_F-serratus_M_contig972.21058.1 ID=mRNA_F-serratus_M_contig972.21058.1|Name=mRNA_F-serratus_M_contig972.21058.1|organism=Fucus serratus male|type=CDS|length=1764bp|location=Sequence derived from alignment at F-serratus_M_contig972:279874..282326+ (Fucus serratus male)
ATGGCCGCCGCCGCGCGCGGTGTCGCAGTTGATTCCAGTTCCCGTAACAG
TACCAAGCCCAAGGAAAGCGAGGAAGCGAAGCAGATGGCCGCCGCCGCGC
GCGGTGTCGCAGTTGATTCCAGTTCCCGTAACAGTACCAAGCCCAAGGAA
AGCGAGGAAGCGAAGCAGGTGGCGGTAGAGACCCTCCTCGGTCTGAAGAA
CTCTCAAGGGTCGAAGAGCGGCGAACCATTGGACGAGGCGTCGGCGCAAG
CCATGGCGGCAGTGACGACGGCGGCGGTCTCCGCTGCTGCAGCAGCCGCC
CAGGAGGCCGCCGCTCACGCCTCGGCCGCCGGTGCGGATGACGACAGCGC
GGCTTCGGCGGCTGCTGCAGCAGCGGCGACGGCCAAGGCGGTGGCGCAGG
CGGTGGCGGTGGCAAGCAACCTTGCGACGGAGAGAGAGCGGGCCCCCACC
TTGGGGAGGCATTCCGACGCGCCCGTGGTCGGCGAAGGAAAGGAAACCGC
TTCGGCGGTGACAGCGACGACCGATGATAGTCAGAAGCCAGCAACTGGTG
GTGGTGGTGATAACAAACTGGCAGGGGTGGATGACGGTAAGGAGCCGGCA
ACGACGGGTGATGGTGGTAAGCTGACAGCGGCCAATCATAGTGACAAACC
GGCAGCGGCCGAGAAAAATGGGAGCAGGAAGGCGGACGGTGTAGCGCCAA
ATGGCGATGGCAATGCTAAGGGGGAAAAAGCGCCAGTGGAGGCGAAAGAG
GTTTCACCGTCGCCGGCAGGAGTGCGGGCGCCGGCGCACGGGGGGCCGGA
AGAAGCGGCTTCGCGCGAGGCGTTTGCGGGGAGATCAGAGCAATCGACTC
AGGATGCGACGGCGGGAAGCAAGCGTCGAGCAGCAGAGCCGCCGTGTTCA
GAAGACGATGCAGTTCCCGCCGACGCGATATCCAAGCGGAGGCAAACTTT
GGCTTCTCCTGTTTGAGTGGCGGTAGAGACCCTCCTCGGTCTGAAGAACT
CTCAAGGGTCGAAGAGCGGCGAACCATTGGACGAGGCGTCGGCGCAAGCC
ATGGCGGCAGTGACGACGGCGGCGGTCTCCGCTGCTGCAGCAGCCGCCCA
GGAGGCCGCCGCTCACGCCTCGGCCGCCGGTGCGGATGACGACAGCGCGG
CTTCGGCGGCTGCTGCAGCAGCGGCGACGGCCAAGGCGGTGGCGCAGGCG
GTGGCGGTGGCAAGCAACCTTGCGACGGAGAGAGAGCGGGCCCCCACCTT
GGGGAGGCATTCCGACGCGCCCGTGGTCGGCGAAGGAAAGGAAACCGCTT
CGGCGGTGACAGCGACGACCGATGATAGTCAGAAGCCAGCAACTGGTGGT
GGTGGTGATAACAAACTGGCAGGGGTGGATGACGGTAAGGAGCCGGCAAC
GACGGGTGATGGTGGTAAGCTGACAGCGGCCAATCATAGTGACAAACCGG
CAGCGGCCGAGAAAAATGGGAGCAGGAAGGCGGACGGTGTAGCGCCAAAT
GGCGATGGCAATGCTAAGGGGGAAAAAGCGCCAGTGGAGGCGAAAGAGGT
TTCACCGTCGCCGGCAGGAGTGCGGGCGCCGGCGCACGGGGGGCCGGAAG
AAGCGGCTTCGCGCGAGGCGTTTGCGGGGAGATCAGAGCAATCGACTCAG
GATGCGACGGCGGGAAGCAAGCGTCGAGCAGCAGAGCCGCCGTGTTCAGA
AGACGATGCAGTTCCCGCCGACGCGATATCCAAGCGGAGGCAAACTTTGG
CTTCTCCTGTTTGA
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