mRNA_F-serratus_M_contig972.21057.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig972.21057.1
Unique NamemRNA_F-serratus_M_contig972.21057.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig972.21057.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.130e-18
Identity = 56/79 (70.89%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:  271 SKGAGRTGGLSVGGKK---RGSFTRPIADLVLPIGAAQLSLEARAGAYRKAQEAAAAGMAAARAFVEGEFPTDENGEFV 498
            S GA +      GG K   +    RPIADLVLP GAAQLSLEARAGAYR+AQEAAAAGMAAARAFVEGE+PTD NGEF+
Sbjct:  366 SPGAAKRASPKSGGVKPRHKAGGVRPIADLVLPSGAAQLSLEARAGAYRRAQEAAAAGMAAARAFVEGEYPTDGNGEFL 444
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BLAST of mRNA_F-serratus_M_contig972.21057.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.100e-17
Identity = 58/84 (69.05%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:  334 RPIADLVLPIGAAQLSLEARAGAYRKAQEAAAAGMAAARAFVEGEFPTDENGEFVVNPRTSPPSTAQFPMSSTAGAGPSSQKQG 585
            RPIADLVLP GAAQLSLEARAGAYR+AQEAAAAGMAAARAFVEGE+PTD +GEF+    T+ P T Q          P  QKQG
Sbjct:  395 RPIADLVLPSGAAQLSLEARAGAYRRAQEAAAAGMAAARAFVEGEYPTDGSGEFLSAKSTALP-TGQ----------PGGQKQG 467
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig972.21057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM00_ECTSI3.130e-1870.89Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
A0A6H5JM19_9PHAE5.100e-1769.05Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig972contigF-serratus_M_contig972:278174..279498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size906
Cds size903
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932754.0151594-CDS-F-serratus_M_contig972:278173..2786821622932754.0151594-CDS-F-serratus_M_contig972:278173..278682Fucus serratus maleCDSF-serratus_M_contig972 278174..278682 +
1690964457.4523203-CDS-F-serratus_M_contig972:278173..2786821690964457.4523203-CDS-F-serratus_M_contig972:278173..278682Fucus serratus maleCDSF-serratus_M_contig972 278174..278682 +
1622932754.0322802-CDS-F-serratus_M_contig972:279102..2794961622932754.0322802-CDS-F-serratus_M_contig972:279102..279496Fucus serratus maleCDSF-serratus_M_contig972 279103..279496 +
1690964457.4676836-CDS-F-serratus_M_contig972:279102..2794961690964457.4676836-CDS-F-serratus_M_contig972:279102..279496Fucus serratus maleCDSF-serratus_M_contig972 279103..279496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig972.21057.1prot_F-serratus_M_contig972.21057.1Fucus serratus malepolypeptideF-serratus_M_contig972 278174..279496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig972.21057.1

>prot_F-serratus_M_contig972.21057.1 ID=prot_F-serratus_M_contig972.21057.1|Name=mRNA_F-serratus_M_contig972.21057.1|organism=Fucus serratus male|type=polypeptide|length=301bp
ATGKEVNFRGVESGGKGGANTTSSSAANGINRLLAVGGRDQPRLPGISIP
PEGSDNINMGAFGGHGIAAASSGNAGSSASSPRSVGSRARSKGAGRTGGL
SVGGKKRGSFTRPIADLVLPIGAAQLSLEARAGAYRKAQEAAAAGMAAAR
AFVEGEFPTDENGEFVVNPRTSPPSTAQFPMSSTAGAGPSSQKQGILGRI
ISSGTSSMPAKSSTSSAATAMMSDAPSAHKFPSSAVSVPPDPFAASSRTN
SSVGGVPPAAVAAAAAAAAAAASAAAAQQAAAGASQASQQQQQQQIGQKQ
Q
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mRNA from alignment at F-serratus_M_contig972:278174..279498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig972.21057.1 ID=mRNA_F-serratus_M_contig972.21057.1|Name=mRNA_F-serratus_M_contig972.21057.1|organism=Fucus serratus male|type=mRNA|length=1325bp|location=Sequence derived from alignment at F-serratus_M_contig972:278174..279498+ (Fucus serratus male)
GCAACGGGCAAAGAAGTCAACTTTAGAGGGGTAGAGAGCGGAGGAAAGGG
AGGCGCGAATACTACGAGCTCCTCTGCTGCAAACGGCATCAATCGCCTGT
TGGCGGTGGGTGGGCGCGACCAACCAAGACTCCCCGGGATATCAATCCCG
CCGGAGGGCAGCGACAACATCAACATGGGCGCTTTCGGCGGTCACGGCAT
AGCGGCTGCCTCTTCCGGTAATGCAGGGTCCAGCGCCTCGTCACCGCGCT
CGGTTGGTTCTCGTGCGAGATCAAAAGGTGCAGGTCGGACCGGAGGACTC
TCGGTCGGCGGCAAAAAGAGGGGTTCCTTTACACGCCCCATTGCGGACCT
GGTACTGCCGATTGGTGCTGCGCAGCTTTCGCTGGAGGCTAGAGCGGGGG
CGTACAGGAAGGCGCAAGAGGCCGCCGCAGCCGGCATGGCGGCGGCCCGA
GCCTTCGTGGAGGGAGAGTTCCCCACCGACGAGAATGGCGAGTTCGTCGT
CAATCCCAGGTGTGTGATCCGGCCTAAACTGGTTGCCGCCAGAGTTGTTG
CAAACGTAACGTCACAAACCGAGACCGCTACTGAAGCTCCGAGGGTTACA
AAGCTTCCATGGTGGCACGAAGCATACGCAAAAAGCGGTTTTCGTTTGTT
TACTGATTTTCCTGCGGGGGACTATAGACGCCCTCTGCTACCGTATACGC
AATCTGCGTATGCCCGCATCCCTCGTGCTGTTGCACGCGACGGCGAGAAG
CAGCGAGTTCGCAGTTGAGTGAACAGCCTCACCCTCCCCGCCCCCGCTGC
CATTTCGGACGAAGTTGTTTGAAAGGCAGAAGAAGCGCTTACCCCGCTTT
CAGCCGCGAGGAAAACTTACACAAACAAGTATCCCGTTGATCAAATGCCT
CTTGTCGTTCCTCTCGCACCCCTCAACAGGACCAGCCCGCCATCGACCGC
CCAATTTCCTATGTCATCCACGGCGGGAGCGGGCCCTTCTTCTCAAAAGC
AAGGCATACTCGGCCGTATCATCTCGTCTGGCACATCTTCAATGCCGGCA
AAATCATCGACCTCGTCCGCCGCCACGGCGATGATGTCAGACGCCCCCAG
TGCGCACAAATTTCCTTCTTCAGCGGTGTCGGTTCCACCCGACCCTTTTG
CAGCGTCCTCCAGGACCAACAGTTCGGTCGGCGGGGTTCCACCCGCCGCG
GTTGCTGCCGCAGCCGCAGCCGCCGCCGCGGCTGCCTCGGCGGCGGCGGC
TCAACAGGCTGCCGCAGGGGCATCGCAGGCTTCCCAGCAGCAGCAGCAGC
AGCAAATAGGTCAAAAGCAACAGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig972:278174..279498+

>mRNA_F-serratus_M_contig972.21057.1 ID=mRNA_F-serratus_M_contig972.21057.1|Name=mRNA_F-serratus_M_contig972.21057.1|organism=Fucus serratus male|type=CDS|length=1806bp|location=Sequence derived from alignment at F-serratus_M_contig972:278174..279498+ (Fucus serratus male)
GCAACGGGCAAAGAAGTCAACTTTAGAGGGGTAGAGAGCGGAGGAAAGGG
AGGCGCGAATACTACGAGCTCCTCTGCTGCAAACGGCATCAATCGCCTGT
TGGCGGTGGGTGGGCGCGACCAACCAAGACTCCCCGGGATATCAATCCCG
CCGGAGGGCAGCGACAACATCAACATGGGCGCTTTCGGCGGTCACGGCAT
AGCGGCTGCCTCTTCCGGTAATGCAGGGTCCAGCGCCTCGTCACCGCGCT
CGGTTGGTTCTCGTGCGAGATCAAAAGGTGCAGGTCGGACCGGAGGACTC
TCGGTCGGCGGCAAAAAGAGGGGTTCCTTTACACGCCCCATTGCGGACCT
GGTACTGCCGATTGGTGCTGCGCAGCTTTCGCTGGAGGCTAGAGCGGGGG
CGTACAGGAAGGCGCAAGAGGCCGCCGCAGCCGGCATGGCGGCGGCCCGA
GCCTTCGTGGAGGGAGAGTTCCCCACCGACGAGAATGGCGAGTTCGTCGT
CAATCCCAGGCAACGGGCAAAGAAGTCAACTTTAGAGGGGTAGAGAGCGG
AGGAAAGGGAGGCGCGAATACTACGAGCTCCTCTGCTGCAAACGGCATCA
ATCGCCTGTTGGCGGTGGGTGGGCGCGACCAACCAAGACTCCCCGGGATA
TCAATCCCGCCGGAGGGCAGCGACAACATCAACATGGGCGCTTTCGGCGG
TCACGGCATAGCGGCTGCCTCTTCCGGTAATGCAGGGTCCAGCGCCTCGT
CACCGCGCTCGGTTGGTTCTCGTGCGAGATCAAAAGGTGCAGGTCGGACC
GGAGGACTCTCGGTCGGCGGCAAAAAGAGGGGTTCCTTTACACGCCCCAT
TGCGGACCTGGTACTGCCGATTGGTGCTGCGCAGCTTTCGCTGGAGGCTA
GAGCGGGGGCGTACAGGAAGGCGCAAGAGGCCGCCGCAGCCGGCATGGCG
GCGGCCCGAGCCTTCGTGGAGGGAGAGTTCCCCACCGACGAGAATGGCGA
GTTCGTCGTCAATCCCAGGACCAGCCCGCCATCGACCGCCCAATTTCCTA
TGTCATCCACGGCGGGAGCGGGCCCTTCTTCTCAAAAGCAAGGCATACTC
GGCCGTATCATCTCGTCTGGCACATCTTCAATGCCGGCAAAATCATCGAC
CTCGTCCGCCGCCACGGCGATGATGTCAGACGCCCCCAGTGCGCACAAAT
TTCCTTCTTCAGCGGTGTCGGTTCCACCCGACCCTTTTGCAGCGTCCTCC
AGGACCAACAGTTCGGTCGGCGGGGTTCCACCCGCCGCGGTTGCTGCCGC
AGCCGCAGCCGCCGCCGCGGCTGCCTCGGCGGCGGCGGCTCAACAGGCTG
CCGCAGGGGCATCGCAGGCTTCCCAGCAGCAGCAGCAGCAGCAAATAGGT
CAAAAGCAACAGGACCAGCCCGCCATCGACCGCCCAATTTCCTATGTCAT
CCACGGCGGGAGCGGGCCCTTCTTCTCAAAAGCAAGGCATACTCGGCCGT
ATCATCTCGTCTGGCACATCTTCAATGCCGGCAAAATCATCGACCTCGTC
CGCCGCCACGGCGATGATGTCAGACGCCCCCAGTGCGCACAAATTTCCTT
CTTCAGCGGTGTCGGTTCCACCCGACCCTTTTGCAGCGTCCTCCAGGACC
AACAGTTCGGTCGGCGGGGTTCCACCCGCCGCGGTTGCTGCCGCAGCCGC
AGCCGCCGCCGCGGCTGCCTCGGCGGCGGCGGCTCAACAGGCTGCCGCAG
GGGCATCGCAGGCTTCCCAGCAGCAGCAGCAGCAGCAAATAGGTCAAAAG
CAACAG
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