mRNA_F-serratus_M_contig972.21054.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig972.21054.1
Unique NamemRNA_F-serratus_M_contig972.21054.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Match: A0A7S2S836_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S836_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.710e-52
Identity = 100/168 (59.52%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  553 LHIGQKIAQFFRRGGLPDWATLMAISAMPVVELRGGVPVGIWMGLPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREKSEEFG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAGVIMSCLTLSGRTGALLATAVLA 1050
            LH+GQK+A +FR  G+PD A L  ISA+PV+ELRG VPVG+WMGLPIT V   CV+GNM+PI  +LF+L++  ++K+ KP+L RA +KS   G    + Q  +L  FVGIPLPGTGAWTGAMGA LL MP   A+ SIF GVVSAG+IMS LTL+G+ G + A AVLA
Sbjct:  138 LHVGQKVANYFRSFGIPDVAILALISALPVIELRGAVPVGLWMGLPITTVLPACVMGNMLPIIPLLFLLRNEKLKKLMKPILTRAEKKSASLGVGSVEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTALAISSIFTGVVSAGLIMSALTLAGKKGGIAALAVLA 305
[Close]
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Match: A0A7S0IW87_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IW87_9EUKA)

HSP 1 Score: 191 bits (485), Expect = 3.740e-52
Identity = 119/252 (47.22%), Postives = 156/252 (61.90%), Query Frame = 1 
Query:  325 QPPSDGPTSSCASAGLSTLSLERSKRDQLPRLSGRFA--------AICASALALGFAVTVLGSSSACAAAKAGALVVAEGAEKPLHIGQKIAQFFRRGGLPDWATLMAISAMPVVELRGGVPVGIWMGLPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREKSEEFGDAQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAGVIMSCLTLSGRTGALLATAVLAGF 1056
            +P S  P S C++A L  +  ++ KR   P  SG F+        A  ++AL LG  +             + AL +A G  + LH+GQK+A FF++ GLP+WA LM ISA P VELRGGVPVG WMG+     F +CV+GNM+PI   L  L+S FV+K+A P+L RA +K       QS+ LAL LFVGIP PGTGAWTGA+ A LL+MPF  +M +I  GV+ AGVIM+ LT+ G+ GALLA + L  F
Sbjct:   46 RPASHRPVSMCSTA-LDVVHTQKCKR---PLHSGLFSRGALPLSSATTSAALTLGLVLL------------SPALALASGGAEHLHLGQKVALFFQQTGLPNWAVLMLISATPAVELRGGVPVGNWMGISPAATFLICVLGNMLPIAPTLLALRSAFVKKLAAPLLTRAEKKLAGLPKGQSRTLALALFVGIPAPGTGAWTGAIIAYLLDMPFTTSMGAILAGVLLAGVIMTVLTVLGKFGALLALSGLIFF 281
[Close]
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Match: A0A7S3KXA5_9STRA (Ferredoxin--NADP(+) reductase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXA5_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.090e-51
Identity = 121/232 (52.16%), Postives = 157/232 (67.67%), Query Frame = 1 
Query:  370 LSTLSLERSKRDQLPRLSGR-FAAICASALALGFAVTVLGSSSACAAAKAGALVVAEGAEKPLHIGQKIAQFFRRGGLPDWATLMAISAMPVVELRGGVPVGIWMGLPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREKSEEFG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAGVIMSCLTLSGRTGALLATAVLAGF 1056
            +S+ + + SKR  + +++ R    +CA AL   F  T   +S A AA KA    VAE  E  LH GQK+A+FF+  G+PD   L  ISA+PVVELRG VPVG+WMGLPI+ V  +C++GNMIPI  +L +L++P ++K+  P+L+RA +K+ E G   A  Q  +L  FVGIPLPGTGAWTGAMGA LL MPF  A+ SIF GVVSAGVIMS +TL G+ G + A AVL  F
Sbjct:   57 VSSTTNKISKRKAVKKIASRALLGLCAIAL---FQATT--ASPAWAAKKA----VAEATEH-LHTGQKVAKFFQSFGIPDLGVLALISALPVVELRGAVPVGVWMGLPISTVLPICILGNMIPIVPLLILLRNPKLKKLMDPILSRAEKKTSELGIGSAGKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPFALALSSIFTGVVSAGVIMSAITLMGKKGGIAALAVLFVF 278
[Close]
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Match: A0A6V2C2F9_9STRA (Ferredoxin--NADP(+) reductase n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2C2F9_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.440e-51
Identity = 114/207 (55.07%), Postives = 143/207 (69.08%), Query Frame = 1 
Query:  457 ALGFAVTVLGSS----SACAAAKAGALV-VAEGAEKPLHIGQKIAQFFRRGGLPDWATLMAISAMPVVELRGGVPVGIWMGLPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREKSEEFG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAGVIMSCLTLSGRTGALLATAVLAGF 1056
            A+ F++ +L +S    SA AA K  A+   A  A + LH+GQK+A +FR  GLPD A L  ISAMPV+ELRG VPVG+WMGLPIT V   CV+GNM+PI  +LF+LK+  + K+ KP+L+RA +KS   G      Q  +L  FVGIPLPGTGAWTGAMGA LL MP   A+ SIF GVVSAG IMS +TL+G+ G + A A+LA F
Sbjct:  111 AIAFSILLLTTSTFAPSATAAKKTAAVAETATAAAEHLHVGQKVANYFRSFGLPDVAILAIISAMPVIELRGAVPVGLWMGLPITTVLPACVMGNMVPIVPLLFLLKNEGLEKLMKPILDRAEKKSSSLGVGTLDKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTGLALSSIFAGVVSAGCIMSAITLAGKKGGIAALAILALF 317
[Close]
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Match: A0A7S2C209_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C209_9EUKA)

HSP 1 Score: 185 bits (470), Expect = 2.150e-50
Identity = 111/210 (52.86%), Postives = 138/210 (65.71%), Query Frame = 1 
Query:  427 RFAAICASALALGFAVTVLGSSSACAAAKAGALVVAEGAEKPLHIGQKIAQFFRRGGLPDWATLMAISAMPVVELRGGVPVGIWMGLPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREKSEEFGDAQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAGVIMSCLTLSGRTGALLATAVLAGF 1056
            RF A  A+AL L     +LG +    A  +G +   EGA   LH GQKIA +FR+ GLPDWATL+ ISA+P VELRGGVPVG WMGL       +C++GNM+PI  IL   +S FV+   KP++ RA +K       QS+ LAL LFVG+P PGTGAWTGA  + LL MPF  AM +IF GVV AG+IM+ LTL+G+ GAL+A A L  F
Sbjct:   53 RFGAAAATALPL-----MLGVARPALALASGGI---EGAH--LHTGQKIALYFRKFGLPDWATLVLISAVPGVELRGGVPVGNWMGLSPWATLIICILGNMLPIAPILLAFRSDFVKAKLKPLITRAEKKLAGLPKGQSRELALALFVGVPAPGTGAWTGATISYLLGMPFGTAMGAIFAGVVIAGMIMTVLTLAGKLGALVALAALMTF 252
[Close]
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Match: A0A1Z5JIY6_FISSO (Ferredoxin--NADP(+) reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIY6_FISSO)

HSP 1 Score: 193 bits (490), Expect = 7.920e-50
Identity = 114/233 (48.93%), Postives = 147/233 (63.09%), Query Frame = 1 
Query:  364 AGLSTLSLERSKRD---QLPRLSGRFAAICASALALGFAVTVLGSSSACAAAKAGALVVAEGAEKPLHIGQKIAQFFRRGGLPDWATLMAISAMPVVELRGGVPVGIWMGLPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREKSEEFG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAGVIMSCLTLSGRTGALLATAVL 1047
            A +++ SLE    D   Q   L  R AA   S +A GF    L   +    A A A    +  E PLH+GQKIA +FR  G+PD   L  ISA+P+VELRG +PVGIWMGLPI+KV  +C++GNMIPI  +L +L++  ++    P+L +A +K++E G    Q Q  +L  FVGIPLPGTGAWTGAMGA LL MP   A  SIF GVVSAGVIM+ +TL+G+ G + A A L
Sbjct:   52 ASITSTSLEAHLNDNASQTVPLKRRVAAKILSRVAFGFCSLALLHMATLEPANA-ARKAKKAVEVPLHLGQKIANYFRTFGIPDLGVLTIISALPIVELRGAIPVGIWMGLPISKVLPVCILGNMIPILPLLLLLRNKTLKNAMNPILTQAEKKTKELGIGSVQKQWASLATFVGIPLPGTGAWTGAMGAFLLGMPLAVAFTSIFAGVVSAGVIMTAITLAGKAGGIAALAAL 283
[Close]
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Match: A0A7S1BDH1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDH1_9STRA)

HSP 1 Score: 186 bits (472), Expect = 7.750e-49
Identity = 109/206 (52.91%), Postives = 135/206 (65.53%), Query Frame = 1 
Query:  466 FAVTVLGSSSACAAAKAGALVVAEGAEKPLHIGQKIAQFFRRGGLPDWATLMAISAMPVVELRGGVPVGIWMGLPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREKSEEFG--DAQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAGVIMSCLTLSGRTGALLATAVLAGFCLSNINK 1077
            F V +L SS + A A  GA   A  A + LH GQK+A++F+  GL D+A L  ISA+PVVELRG VPVG+WMG+PI  V  +CV+GNM PI  +L +L++  VR +  P+L RA  KS   G    + +  +L  FVGIPLPGTGAWTGAMGA LL MP   A+ SIF GVVSAG I+S LTL+GRTG L   A LA F  +   K
Sbjct:  107 FFVALLSSSPSPALASQGA---AAAAFEHLHTGQKVARYFQSFGLSDFAVLALISALPVVELRGAVPVGVWMGVPIQYVLPICVLGNMAPIVPLLLLLRNKSVRALMDPILRRAESKSASLGVGTPRKRWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTAAALSSIFAGVVSAGCIVSALTLAGRTGGLAVLAFLAVFAANEFTK 309
[Close]
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Match: A0A6U3YD80_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YD80_9STRA)

HSP 1 Score: 178 bits (452), Expect = 9.800e-48
Identity = 90/144 (62.50%), Postives = 110/144 (76.39%), Query Frame = 1 
Query:  553 LHIGQKIAQFFRRGGLPDWATLMAISAMPVVELRGGVPVGIWMGLPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREKSEEFGDAQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAG 984
            LHIGQK+A+ F+  GL D   +  ISAMPVVELRG +PVG WMGLP+ KV  LC+VGNM+PI  IL++L+   V+++ KPVL+RA+ K+  F D +S+A+ L  FVGIPLPGTGAWTGAMGA LL MPF  AM SIF GVVSAG
Sbjct:   89 LHIGQKVARVFQGRGLSDEMVVCLISAMPVVELRGAIPVGAWMGLPLPKVLGLCIVGNMLPIAPILYLLRFGPVQRLLKPVLDRAQSKASAFKDERSRAMLLAAFVGIPLPGTGAWTGAMGAFLLGMPFPTAMASIFAGVVSAG 232
[Close]
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Match: A0A7S2SNX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNX7_9STRA)

HSP 1 Score: 179 bits (453), Expect = 2.270e-47
Identity = 95/177 (53.67%), Postives = 124/177 (70.06%), Query Frame = 1 
Query:  544 EKPLHIGQKIAQFFRRGGLPDWATLMAISAMPVVELRGGVPVGIWMGLPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREK-SEEFGDAQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAGVIMSCLTLSGRTGALLATAVLAGFCLSNI 1071
            E+ +H+GQK+AQFF+  GLPD   +M I+AMPV+ELRG VPVG+WM +   KV  L V+GNM PI   L +LK   VRKV KP+L+RA+ K    F   +SQA+ L  FVG+P PGTGAWTGAM ASL++MPFQ A  SI +GV+S+G+IM+ +TL+G  GA+L      G  LS +
Sbjct:  118 EEKVHVGQKVAQFFQGFGLPDEVVIMLIAAMPVIELRGAVPVGMWMDMAPLKVLGLSVLGNMAPIVPFLILLKLEPVRKVLKPLLDRAKSKVGGLFESDKSQAMFLAAFVGVPAPGTGAWTGAMAASLIDMPFQVAAASILVGVISSGLIMTAVTLAGLKGAILVXXXXIGGLLSQM 294
[Close]
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Match: A0A7S2BIQ8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BIQ8_9STRA)

HSP 1 Score: 172 bits (436), Expect = 5.220e-47
Identity = 88/142 (61.97%), Postives = 109/142 (76.76%), Query Frame = 1 
Query:  640 VVELRGGVPVGIWMGLPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREKSE-EFGDAQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAGVIMSCLTLSGRTGALLATAVLAGFCL 1062
            VVELRG +PVG+W+ LPIT VF LCV GNM+PIP ILF L+S FV+KV KP+L+RA+ K+E  F D +++A+ L  FVG+PLPGTGAWTGAMGA LL MPF  AM SIF GVV+AG+IMS LT  G+ GA++  + L G  L
Sbjct:    1 VVELRGAIPVGVWLDLPITTVFPLCVAGNMVPIPIILFALRSKFVQKVMKPILDRAQHKAEASFKDPKTRAVLLAAFVGVPLPGTGAWTGAMGAFLLGMPFGTAMASIFAGVVTAGIIMSTLTAGGKWGAIITGSFLLGALL 142
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig972.21054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2S836_9STRA1.710e-5259.52Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S0IW87_9EUKA3.740e-5247.22Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
A0A7S3KXA5_9STRA1.090e-5152.16Ferredoxin--NADP(+) reductase n=1 Tax=Amphora coff... [more]
A0A6V2C2F9_9STRA1.440e-5155.07Ferredoxin--NADP(+) reductase n=4 Tax=Ditylum brig... [more]
A0A7S2C209_9EUKA2.150e-5052.86Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A1Z5JIY6_FISSO7.920e-5048.93Ferredoxin--NADP(+) reductase n=2 Tax=Fistulifera ... [more]
A0A7S1BDH1_9STRA7.750e-4952.91Hypothetical protein (Fragment) n=2 Tax=Corethron ... [more]
A0A6U3YD80_9STRA9.800e-4862.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SNX7_9STRA2.270e-4753.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BIQ8_9STRA5.220e-4761.97Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig972contigF-serratus_M_contig972:154071..157794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue2.6e-82
Seed eggNOG ortholog2880.D8LLW4
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Putative small multi-drug export protein
EggNOG OGs28NC2@1,2QUXG@2759
Ec32 ortholog descriptionPutative small multi-drug export
Ec32 orthologEc-14_001930.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1950
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig972.21054.1prot_F-serratus_M_contig972.21054.1Fucus serratus malepolypeptideF-serratus_M_contig972 154155..156924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932755.1455834-UTR-F-serratus_M_contig972:154070..1541541622932755.1455834-UTR-F-serratus_M_contig972:154070..154154Fucus serratus maleUTRF-serratus_M_contig972 154071..154154 +
1690964458.013781-UTR-F-serratus_M_contig972:154070..1541541690964458.013781-UTR-F-serratus_M_contig972:154070..154154Fucus serratus maleUTRF-serratus_M_contig972 154071..154154 +
1622932755.2040493-UTR-F-serratus_M_contig972:156924..1577941622932755.2040493-UTR-F-serratus_M_contig972:156924..157794Fucus serratus maleUTRF-serratus_M_contig972 156925..157794 +
1690964458.0472379-UTR-F-serratus_M_contig972:156924..1577941690964458.0472379-UTR-F-serratus_M_contig972:156924..157794Fucus serratus maleUTRF-serratus_M_contig972 156925..157794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932755.161727-CDS-F-serratus_M_contig972:154154..1550151622932755.161727-CDS-F-serratus_M_contig972:154154..155015Fucus serratus maleCDSF-serratus_M_contig972 154155..155015 +
1690964458.0269823-CDS-F-serratus_M_contig972:154154..1550151690964458.0269823-CDS-F-serratus_M_contig972:154154..155015Fucus serratus maleCDSF-serratus_M_contig972 154155..155015 +
1622932755.1768544-CDS-F-serratus_M_contig972:156789..1569241622932755.1768544-CDS-F-serratus_M_contig972:156789..156924Fucus serratus maleCDSF-serratus_M_contig972 156790..156924 +
1690964458.0369866-CDS-F-serratus_M_contig972:156789..1569241690964458.0369866-CDS-F-serratus_M_contig972:156789..156924Fucus serratus maleCDSF-serratus_M_contig972 156790..156924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig972.21054.1

>prot_F-serratus_M_contig972.21054.1 ID=prot_F-serratus_M_contig972.21054.1|Name=mRNA_F-serratus_M_contig972.21054.1|organism=Fucus serratus male|type=polypeptide|length=332bp
MMARNLLTCAIVAVIQLVSVVPSTAFLISPYPTTPHAYVGRATKHARRSF
SVSPSQPLRSSSRKKENLAIYPASYHSLPHQPPSDGPTSSCASAGLSTLS
LERSKRDQLPRLSGRFAAICASALALGFAVTVLGSSSACAAAKAGALVVA
EGAEKPLHIGQKIAQFFRRGGLPDWATLMAISAMPVVELRGGVPVGIWMG
LPITKVFALCVVGNMIPIPAILFVLKSPFVRKVAKPVLNRAREKSEEFGD
AQSQALALTLFVGIPLPGTGAWTGAMGASLLEMPFQKAMLSIFLGVVSAG
VIMSCLTLSGRTGALLATAVLAGFCLSNINK*
back to top

mRNA from alignment at F-serratus_M_contig972:154071..157794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig972.21054.1 ID=mRNA_F-serratus_M_contig972.21054.1|Name=mRNA_F-serratus_M_contig972.21054.1|organism=Fucus serratus male|type=mRNA|length=3724bp|location=Sequence derived from alignment at F-serratus_M_contig972:154071..157794+ (Fucus serratus male)
TGTGCTTTTAATCACCGTGAGGTGTTTAACTCATCACACTGAGTTCGAAA
CTTTCTGTTCCCACTCGAGAGAGACACGGAGTGCATGATGGCGAGGAATT
TGTTAACGTGCGCCATTGTTGCCGTCATCCAGCTCGTGTCGGTGGTGCCG
TCGACGGCCTTCTTGATTTCACCGTATCCCACCACACCTCATGCGTACGT
CGGAAGAGCAACAAAACACGCCCGGCGTTCTTTCTCAGTCTCGCCCTCGC
AGCCGCTACGCTCATCGTCACGAAAGAAGGAGAATCTGGCCATCTATCCG
GCCTCCTACCATTCTTTGCCACATCAGCCTCCGAGCGATGGACCCACATC
GTCCTGCGCATCGGCGGGACTGTCAACCTTGTCCTTAGAGCGAAGTAAAC
GTGACCAACTGCCACGCCTCAGCGGGCGATTCGCGGCAATTTGCGCCTCC
GCTCTAGCGTTAGGTTTCGCCGTCACCGTCTTAGGTTCGAGTTCCGCTTG
CGCGGCCGCCAAGGCTGGAGCGCTGGTGGTAGCGGAGGGGGCTGAGAAGC
CCCTGCACATTGGGCAGAAGATAGCTCAGTTTTTCCGTCGCGGCGGGCTG
CCCGACTGGGCGACGCTCATGGCAATTTCTGCTATGCCGGTCGTGGAGCT
GCGCGGCGGTGTGCCGGTGGGAATCTGGATGGGTCTCCCGATCACCAAGG
TATTTGCGCTGTGCGTGGTGGGCAACATGATCCCCATTCCGGCGATACTG
TTCGTGCTAAAATCCCCCTTCGTGCGGAAGGTCGCTAAGCCTGTGCTGAA
CCGAGCTCGTGAGAAGTCGGAAGAATTTGGGGACGCCCAGAGCCAGGCTC
TTGCTCTCACCCTCTTCGTTGGTATCCCGCTTCCGGGGACAGGGGCGTGG
ACCGGTGCGATGGGGGCATCTCTGCTGGAAATGCCTTTCCAAAAGGTGAC
TCGTTCATTTCTATTACTCAATCCCAACGCTTTCGGCTGAAGGCATGTCT
CATGAACAGAAGAAGTAAAAATAGTTAAAGACAAATTTACAACGGTTACA
TGTAGTATGCGTGTATGAATTTACATGAAAAGGGGTCATGTTTGGCGCGA
GAGCCCAGAAAAAGCGCAGGCCTCACGGCTTCCTCGACCACTCTATCAAT
AGTTTGATTTAGTCTAATCGTCCATTGGTCTAATAATAGTATCAACATTG
TCATGTCCACGACGAATCCGCACTTAATTGGCGATAAGCTAATCTTGTGT
GCTCTCTATTATAATATTTTGAGTACGGGAAACGTGAAAAAGTTCCATGC
TGTGGTGTTGTGGTCGGTTTTGACTTTGTTGTCAGACGGAATATGGCTGG
AGGAACGCCCCCGCCCCCGCCCCCCTCCCCTCCCCTCCCCGCCATGAAGC
CCTCACACCCACCCTACCTAGAGCTCAAGAGCAGCAAGAGCACATAAAGC
AATATTGTAGTACATTTGGTTCCATTATCGCGCCGGCTTGCCACGAGGGA
GAGGGAGTAGCGGCCAATCGCTAAGACGCGACGACAGACAACGGAAGGGA
GCACAGGCGACAACGACTCTACGGAGGACGCTTGGCATGACTTGTTTATA
AAATACGCCTCTCTCCTTTAGGTCCACCAGCTGGCTATTAGCTTTCGGCT
GTTAGGGGTGAAGATGGATCAGCCAGCGCGATGCTGGCATCCGTTGTTTT
GGGGGGGGGCGTGAGAGGAGATGGTTGGAGATCTACAGTATGATAGCGGC
TGAACCGGTCCTGCTGTACCATGCGCAGAGTCTACGGTGTGTGCTCGTTC
TAGCCATGAAGCCTCAATGCACCTAAATGTTCCCGAACATGCAGTAAAAG
TGCAGGTTGAAATCGCAGCATGGCGCGGGCGAGTGTGTGGTCAGCTCACT
CGCGAATGCCATTAATAGAGAAATATAGATACTCCAACCACATAAGCGCG
TCAAACAAACCACATGCTCGTAAGAGTCTTGTGTGCTCCGCGCCGAAACA
CAAAAAATGACATGAATGCTATTCGGTACGAAGGCCCAAGTGAAGCAAGT
CTTGTACTTTGACGCTTCATGGCTCTATTTTATACTATGATACCGATGGT
CAAAATAAGTAAGATTTTAGTGCAGGCGGGCAATCTGGTTTCGGAAGCAC
ATGAGTTCGTATTAAAAAATGATCCTCCCAACGTTAAGAGTAGTATTTGT
TAGTAGAACGGATGAACAGGAAGATTACTATTAATTGTTAATAGGATATG
CCATTTTTTCATCAACATGAAAGTGCACACTAAGGTTACATTTTTTCCCC
TTTGACTGGGGGATGCTCAGAATAACTCGTAGATTCCCTAACCATCCCCC
CCCAACTTTTATTCTGATGTGTGGTTACTAAATACCGAAGTAACTTTTTT
CAGGGAGAGGGAGAAAAAGAACAAAGAAAAAATACGATTCGCGAACAATC
CTGGCTTTGACCTCACCTATTGACACGTGAACTACCCGAACGCATCCTCA
AGGTCAGTTTTGACCTCCGGCTACGCAATCGGTTTGTGCGTACCTGCTAC
GGGGTCTAGACTACAGCGTACAAAAAAGAAACACATGAGGGATGAAACAA
ACTTGCTTCGCCTGCTGTAAGAGCGACCAACGCTTCTTCTGACAACACGA
ACCAACACCAGCTCCCTCCTGCCTTCCAACCTCGTGAACTCTAACGCGTC
TCTTGACGAAACCCCTCAGGCGATGCTGTCAATATTCCTCGGGGTGGTCA
GCGCGGGCGTGATCATGAGTTGCCTCACGCTCTCCGGTAGGACAGGCGCG
CTACTTGCGACGGCCGTCCTGGCCGGGTTCTGCCTGTCCAATATCAATAA
ATAGTGAGACCGCCTCAAACTTTCTTGTCCAAGTACACGGATATTCACGG
AGGAAGAAGATGAGGTCGGGATTGACTTCGAGCGCTAAAAGTTAAGCCTG
CAGCTTGAGCAGCAAGCCCAGCTGTAGCGCCGACTGCACGCATACTTTCC
CCCATCCCTTTGTCTTTCACCAGTAGCGTGATGGAATAGTGCTTCCTCTT
TCCTGCGTTTTTTTTGTCGATGGTTTTACCTGCTAGCGTTTTTGGACGTT
TTCCTTGCCAGAGACAGTATATATGCTGATCACCATGCCTCGGGAAAAGT
ACAATAGCGCAGTAGCGAGTGACAATGGGGCAGTGCGGGCGGGCGGGCTG
GCGAGTATCTTCAGCAAGCAGCATATCGGACGATGCGCTGCCCCAGCTCC
AAGTTGATTGTTATATTCGTGCAACCGTGCATAGGGCTAGCTGGCCAACC
TGCGGACTTGTATAGTCTTGTCGGGTGCGGGAAACACGACCGTGGCACGT
GCTACTTGAAGGGGGTACGGTGTTCATGGTAGAAAGAGTGAGGCTTTCGT
TTCGGCGAGGCTGTCGGCTTACTCCGGATGATCTAGTCACTGTGGTAGCT
CATTATCGCAGTGTAAACATCTTAAAAGGGGGAAAACTACCTTACATGGA
CTGTCGTTGCCAGGATGGGGTACGATCTACTGAGCGGGCCTATCGTATCC
TATCATATCCTATTCAGGGTCGTTCCTACGCTCGTTAGACACGTATTTAA
ATTACTTTTGTATCTCCTGAGTTCAGTCGTTTCTGTCCACATGCCCAGCA
TAGCAAATGGTGAGTATTCTATCGAAATATAAACATTTCCTATTAATACA
CGGACCGCTGGTTCTTGTGTTACC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig972:154071..157794+

>mRNA_F-serratus_M_contig972.21054.1 ID=mRNA_F-serratus_M_contig972.21054.1|Name=mRNA_F-serratus_M_contig972.21054.1|organism=Fucus serratus male|type=CDS|length=1992bp|location=Sequence derived from alignment at F-serratus_M_contig972:154071..157794+ (Fucus serratus male)
ATGATGGCGAGGAATTTGTTAACGTGCGCCATTGTTGCCGTCATCCAGCT
CGTGTCGGTGGTGCCGTCGACGGCCTTCTTGATTTCACCGTATCCCACCA
CACCTCATGCGTACGTCGGAAGAGCAACAAAACACGCCCGGCGTTCTTTC
TCAGTCTCGCCCTCGCAGCCGCTACGCTCATCGTCACGAAAGAAGGAGAA
TCTGGCCATCTATCCGGCCTCCTACCATTCTTTGCCACATCAGCCTCCGA
GCGATGGACCCACATCGTCCTGCGCATCGGCGGGACTGTCAACCTTGTCC
TTAGAGCGAAGTAAACGTGACCAACTGCCACGCCTCAGCGGGCGATTCGC
GGCAATTTGCGCCTCCGCTCTAGCGTTAGGTTTCGCCGTCACCGTCTTAG
GTTCGAGTTCCGCTTGCGCGGCCGCCAAGGCTGGAGCGCTGGTGGTAGCG
GAGGGGGCTGAGAAGCCCCTGCACATTGGGCAGAAGATAGCTCAGTTTTT
CCGTCGCGGCGGGCTGCCCGACTGGGCGACGCTCATGGCAATTTCTGCTA
TGCCGGTCGTGGAGCTGCGCGGCGGTGTGCCGGTGGGAATCTGGATGGGT
CTCCCGATCACCAAGGTATTTGCGCTGTGCGTGGTGGGCAACATGATCCC
CATTCCGGCGATACTGTTCGTGCTAAAATCCCCCTTCGTGCGGAAGGTCG
CTAAGCCTGTGCTGAACCGAGCTCGTGAGAAGTCGGAAGAATTTGGGGAC
GCCCAGAGCCAGGCTCTTGCTCTCACCCTCTTCGTTGGTATCCCGCTTCC
GGGGACAGGGGCGTGGACCGGTGCGATGGGGGCATCTCTGCTGGAAATGC
CTTTCCAAAAGATGATGGCGAGGAATTTGTTAACGTGCGCCATTGTTGCC
GTCATCCAGCTCGTGTCGGTGGTGCCGTCGACGGCCTTCTTGATTTCACC
GTATCCCACCACACCTCATGCGTACGTCGGAAGAGCAACAAAACACGCCC
GGCGTTCTTTCTCAGTCTCGCCCTCGCAGCCGCTACGCTCATCGTCACGA
AAGAAGGAGAATCTGGCCATCTATCCGGCCTCCTACCATTCTTTGCCACA
TCAGCCTCCGAGCGATGGACCCACATCGTCCTGCGCATCGGCGGGACTGT
CAACCTTGTCCTTAGAGCGAAGTAAACGTGACCAACTGCCACGCCTCAGC
GGGCGATTCGCGGCAATTTGCGCCTCCGCTCTAGCGTTAGGTTTCGCCGT
CACCGTCTTAGGTTCGAGTTCCGCTTGCGCGGCCGCCAAGGCTGGAGCGC
TGGTGGTAGCGGAGGGGGCTGAGAAGCCCCTGCACATTGGGCAGAAGATA
GCTCAGTTTTTCCGTCGCGGCGGGCTGCCCGACTGGGCGACGCTCATGGC
AATTTCTGCTATGCCGGTCGTGGAGCTGCGCGGCGGTGTGCCGGTGGGAA
TCTGGATGGGTCTCCCGATCACCAAGGTATTTGCGCTGTGCGTGGTGGGC
AACATGATCCCCATTCCGGCGATACTGTTCGTGCTAAAATCCCCCTTCGT
GCGGAAGGTCGCTAAGCCTGTGCTGAACCGAGCTCGTGAGAAGTCGGAAG
AATTTGGGGACGCCCAGAGCCAGGCTCTTGCTCTCACCCTCTTCGTTGGT
ATCCCGCTTCCGGGGACAGGGGCGTGGACCGGTGCGATGGGGGCATCTCT
GCTGGAAATGCCTTTCCAAAAGGCGATGCTGTCAATATTCCTCGGGGTGG
TCAGCGCGGGCGTGATCATGAGTTGCCTCACGCTCTCCGGTAGGACAGGC
GCGCTACTTGCGACGGCCGTCCTGGCCGGGTTCTGCCTGTCCAATATCAA
TAAATAGGCGATGCTGTCAATATTCCTCGGGGTGGTCAGCGCGGGCGTGA
TCATGAGTTGCCTCACGCTCTCCGGTAGGACAGGCGCGCTACTTGCGACG
GCCGTCCTGGCCGGGTTCTGCCTGTCCAATATCAATAAATAG
back to top