mRNA_F-serratus_M_contig972.21052.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig972.21052.1
Unique NamemRNA_F-serratus_M_contig972.21052.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig972.21052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig972contigF-serratus_M_contig972:48179..52155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932753.9588592-CDS-F-serratus_M_contig972:48180..484171622932753.9588592-CDS-F-serratus_M_contig972:48180..48417Fucus serratus maleCDSF-serratus_M_contig972 48181..48417 -
1690964457.4207394-CDS-F-serratus_M_contig972:48180..484171690964457.4207394-CDS-F-serratus_M_contig972:48180..48417Fucus serratus maleCDSF-serratus_M_contig972 48181..48417 -
1622932753.9713492-CDS-F-serratus_M_contig972:52116..521551622932753.9713492-CDS-F-serratus_M_contig972:52116..52155Fucus serratus maleCDSF-serratus_M_contig972 52117..52155 -
1690964457.4334931-CDS-F-serratus_M_contig972:52116..521551690964457.4334931-CDS-F-serratus_M_contig972:52116..52155Fucus serratus maleCDSF-serratus_M_contig972 52117..52155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig972.21052.1prot_F-serratus_M_contig972.21052.1Fucus serratus malepolypeptideF-serratus_M_contig972 48181..52155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig972.21052.1

>prot_F-serratus_M_contig972.21052.1 ID=prot_F-serratus_M_contig972.21052.1|Name=mRNA_F-serratus_M_contig972.21052.1|organism=Fucus serratus male|type=polypeptide|length=92bp
NEQHVESNPPFLQEHKSKGLQTTVGSGGGGASIGGGGVASSNFGGSTGGG
RGRNGGGGRSKRGPRRRHWGGGGGNDGEGVNSGVGQDPTDRQ
back to top

mRNA from alignment at F-serratus_M_contig972:48179..52155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig972.21052.1 ID=mRNA_F-serratus_M_contig972.21052.1|Name=mRNA_F-serratus_M_contig972.21052.1|organism=Fucus serratus male|type=mRNA|length=3977bp|location=Sequence derived from alignment at F-serratus_M_contig972:48179..52155- (Fucus serratus male)
AACGAGCAGCATGTGGAATCCAACCCTCCCTTCTTGCAGGTAAACATGTA
CCAGTAGCTTTTATGAAATGGTCCACCTTATTACAAACCAAGTTCGAGAG
CTTCAAGAATCAGTTGCAGACGACCTTCGCTGCTCAGGTTGGGAATATAC
GAGGATTCATCGGATAGACTTTGACGAACTGAAACACTTGTCTCGTTCGA
CATGATGCAGTTCGTCTTCCGAGATGTCCGCTACTCGAACCAACAGGGAC
TCAAATCGCGTCAAAGTTCTTGCTACAGGTCCACCCACCCGAGAACGTCT
GGAACTTTCAGAATCTGAGTATAACAAGCTGCAGATGAGACTGCCCGGTG
TGATCTCCGTCTACCCAAAGTCGTCAAAAGTGACTCAAAAAGTTTTCCAA
TTACAATAATAGCTTCAGTACACGGTATCAGAGCGTTACACGACGAGGAG
TATATGCGAAACTCCCACAAGGAATTGTACCGAACAATCTCAAAACCGTT
TTTTAAAGAAAAACCGTTCATCATATCATACCTCCTTGCTCCATATCGAG
AGCGACTCCGATCGACTCGGATTTAAAGAAAAAATTGAACGCAACTAAAC
CTCCTCAGCAATCAAAAGGTTTAGATTGGAAAAATTAGTTATAACTATAA
AAGCTCTTGCATGTCCCCAATGTAAATCACATAGGTTCAACATGGTATAA
TTTCGGGGAGAAACCCACCGTTATACTGCTGTATGTATAATCACACATAT
AGCAAGAGTATGGATCAACCGGGCAAGGTTGCCAATCCTGCACGTGGTCA
GATGAACAGGGAAAAATATTTCCCTGTCCGTGTTCGCGCCTGCATAAAAA
GGATAAAATTCATTGTTGTTACTACGTACGACGAAGGGGATGTGCACATA
CTTGGTGTGAGTGCTACAGAATTACAACAAGCTCTTGAGACTGATAGGAG
TACCAGTATATATTTATGAAAACAATTATCAAGTCTGTGTAGAAATGTTC
AAATCTGTTATTTCGATGATAAACTTCAGAATTACAACAAAACATTAGGA
ACTGATGTGAATTTATGAAAGTAGGTGTATGAGGACTGAGGGGTTATGAC
ACCGTGATATAATCATAGGGGAGATAAAGGTCATTTTAGTGTCTACGATG
GAGGAGACCTATAAAAACTAGATGTACATCTATGATATTGTGGTAGCCTA
CCCACGGTTAGCGCTCTCGTTGACGGTGGACAATCACGCTCCAATCAGTT
TTGATTAGTAAGCCTTAGTTTCTCAAGGGCACGCGTCATGTAGAAATCAG
GAAAATTGAAAATTATGGTACCGAAGTCCACGGCGGTGGGGGCCTTGAGC
CCATAAAGCTGGCGCGGGAGCCAGTATCGAGCAGTCCAAAGCCCCGTGCA
TCTCTTAACCCTTCTGGCCCTGGACTACTCGCCTTCCGACAGACCAGACT
GTCATAAAAACTCGCTCCGTTTCACACAAAAATTAAATCCCAAGAAAAAA
AATAGCGTTTGAGAGACATGCAGAGGGAGAGAAGTGCACAAAAAAACAAG
AAGTACATATATCTAGACGGTAGCTTTACGATCTCGGCCCAGGGGGCGTG
ACGGCGGCCCGCGACAGGCTGGTGACGTCTCTCAGGGTACAAGAAGGGTT
ATGGAGTGGTCGTACTGTCGCAGACAGAGGTTGTTGGGTGTTCAGCCCTA
GATGTTCCATGCATGCTATAACTCTATTTTCAAATGATCAGTACAGAGGG
TTCAAATGATCAGTGAGCGCGTTTTGAAGGGCCAGAAGGACAAACTGTAC
TTCTGTACTTCTCTGGCCCCGCCCAATGTGATCACTTCGGACTCACTAGC
GCTCCTTATTTTACAATATTAGCACAACAGCCTATGTTCCCTAAACGTTT
TGACATTTTTCCCCCCTGACTGGGGGGTGCTCAGAAGGTATAGGCGCGTT
CTAGTTTTTCTTTTTGTAGTTGCAGCCTTTGATCACACCTACCAGGTAAA
CGTTTTGACAATTTTTCTCCTGACTGGAGGATGCTCAGAAGGTATAGGCG
CGTTCTGTTTTTTCTTTATACAAAAACGAACATGGATTGGCCCCCTCCGT
GGGTCCAGGCATTCTCCCTAAAAGAGTAGTATACATCCTTTTCCGCGTAC
ATTACAATTGTATATAATGGCAAGAGAGGATATATAGCTTGTACGGGTTG
TTCTGGCTCGCAGATGTGGGCTCCACCATTGCTTGTTGGCTGTAGAACGG
CGCGGTTGCTGTAATTCGTGTGTACAATACGCTGATGTTCGGAGGGCGTG
ATTCGTTCGTTGCTCCTGATATTATGCAGGAGTTTAAAGAAAAATGCGAA
CGCGCCTAAACCTTCTGATCCGCCCTCGGTAGGGGGAAAAAAATCAAAAC
GTTTAGGTGGGCTCAAGGGCTGCAAACACAAAACCTCTCCATGGCATTTA
AACGGGTTCCCCAATGCATATAACGTTGGGTCAACAGTATAATGTCGGGG
AGAAGCCCACCGTTATACTGTATACTTACATTAATCGCCATGCAGGGACA
CCAGAAAAACAAAACAAAAAACAAAACAAAAAAAACAAAACAAAAAAACA
CGAAAACGACAAGACAGTACATCATCAAACAGTAATAAAGACGAATCCAA
TACATCATTAAAGCGGGAACAGAGGACCATGGTGACGCGGAATCTTCATA
TCCAAGTACACGACAGTTGTTTTTCATGGTATCGAGGCAGCAACTTTTGA
GCATGCATATGGGTTCAAAGGTTTTGTCCCAAGTATGGGTGTAAGGTGCC
AGCCCGGGCAATGGTTGTGCTAATGAAACGACTTCCTTTTTTTATATATT
CTTGATTTGAGTGTCTTTTGTTGTCCCTCTTCGTATGCACAGCGTTGCTC
TGCGGTGCAGTACAACTCCTTGCATGTGGAGTTCGGGTATATTTTTTTAA
ATCCCCTACACGAATAGACCGGGCTAAAACAAAAAAAAACAAAAAACTGA
TCAGTGAAATGATCAGTAAACACACGTGAAGGCTCAGAAGGGTTAAAAAC
GCCCCTAGAATCTCGGCCGTTCGCTGCTCCTTATTGGCTCTCGTAGGTAG
AAAACAGACCGTGGTCAGATATCAGCTTTCTCTTCAGACATCCCTTTGAT
TCTCGTGCACAAGGGTTGCAACATTCCCCTGAATCGTCTACGATCAAGCT
GCCCTCTGCCCTCGCCGAATCTGGTTCTTACTCTTCCTATAGGACGTGCC
ACGGTACGCTTGCGCGTACCGTGGCGTCCTACCAGGCTTTCCGTGACAGT
ACCACCTGCCTCTCGCGTGCCGCCTCCTCCCGAAGGCCACCAAATTGGCG
CACGGGAAAAGGCGCACGAGGTGGACACTACCCTCAACCAACCAAACCGT
CGCAGTGTTTCAACCGACCGACTGAATCACGTAGACAGCCAGTTGGTATA
ATTTCTTTCAGGATGATTCCGGTCTTACACCCACCGGGAAGACCCTTCCA
CACTCACACCCAAAGATCAGGTGTTGGAGGGAGAGGGCGTACCATGCACT
GGCTGTAGAAACCATACAAGAGTTTATGTTTACTTGCAGGTCGACAGTCA
CGCTTTAGAAATGATTTCCTGCCAGACACGCCATTGCAAAATCGAGTCGA
ACTTGTAGGCGTTTCTATCTCAAGTCAAATTTCCCCTTTCGACAAACCCA
ACAACCTTCCTTCCTTCCTTCCTGACCTATTATATCAGGAACACAAGAGT
AAAGGTCTTCAAACGACCGTGGGTAGTGGAGGCGGTGGGGCCAGTATCGG
CGGCGGTGGCGTAGCGAGTTCTAACTTCGGTGGTAGCACCGGAGGAGGAC
GTGGGCGTAATGGCGGCGGAGGTAGAAGCAAAAGAGGACCCCGGAGGCGG
CATTGGGGCGGTGGCGGTGGCAATGATGGCGAAGGCGTCAACAGCGGCGT
GGGTCAAGACCCCACCGATCGGCAAGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig972:48179..52155-

>mRNA_F-serratus_M_contig972.21052.1 ID=mRNA_F-serratus_M_contig972.21052.1|Name=mRNA_F-serratus_M_contig972.21052.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig972:48179..52155- (Fucus serratus male)
AACGAGCAGCATGTGGAATCCAACCCTCCCTTCTTGCAGAACGAGCAGCA
TGTGGAATCCAACCCTCCCTTCTTGCAGGAACACAAGAGTAAAGGTCTTC
AAACGACCGTGGGTAGTGGAGGCGGTGGGGCCAGTATCGGCGGCGGTGGC
GTAGCGAGTTCTAACTTCGGTGGTAGCACCGGAGGAGGACGTGGGCGTAA
TGGCGGCGGAGGTAGAAGCAAAAGAGGACCCCGGAGGCGGCATTGGGGCG
GTGGCGGTGGCAATGATGGCGAAGGCGTCAACAGCGGCGTGGGTCAAGAC
CCCACCGATCGGCAAGAACACAAGAGTAAAGGTCTTCAAACGACCGTGGG
TAGTGGAGGCGGTGGGGCCAGTATCGGCGGCGGTGGCGTAGCGAGTTCTA
ACTTCGGTGGTAGCACCGGAGGAGGACGTGGGCGTAATGGCGGCGGAGGT
AGAAGCAAAAGAGGACCCCGGAGGCGGCATTGGGGCGGTGGCGGTGGCAA
TGATGGCGAAGGCGTCAACAGCGGCGTGGGTCAAGACCCCACCGATCGGC
AA
back to top